+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load nvhpc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin https://github.com/larson-group/clubb.git
Output Save Mode: all
Using branch: master
Making list from 'UnresolvedCommits':
CheckRange = True: Getting commit range
Run Output Path: output
Run commands: ['python compile.py -gpu openacc', '\nrm -rf output', '\nmkdir output', "\nsed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", '\npython run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in', '\npython run_scripts/run_scm_all.py -min_cases -params clubb_params_multi_col.in']
Diffing command: run_scripts/run_bindiff_all.py
=============================== Running Test ===============================
Parsing message from commit: 665f3896481654acdb49de9afae25d7a9b24a81c
Parsing message from commit: f3de007e9528afc6cc2d71090bce5c6c53337152
Parsing message from commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669
Checking Commit: 665f3896481654acdb49de9afae25d7a9b24a81c
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: f3de007e9528afc6cc2d71090bce5c6c53337152
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669
Running: final commit to check, not labelled BIT_CHANGING
Checking out 50a5528a55591d69e8b704dccebe1e7d6baa2669
Running: 'python compile.py -gpu openacc'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
Running: 'python run_scripts/run_scm_all.py -min_cases -params clubb_params_multi_col.in'
================== WARNING ==================
Commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669
There was a problem copying the output.
Did the run complete?
Is the output path correct? output
The run will continue, and this commit will be
considered unresolved.
===========================================
Checking out ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f
Running: 'python compile.py -gpu openacc'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
Running: 'python run_scripts/run_scm_all.py -min_cases -params clubb_params_multi_col.in'
================== WARNING ==================
Commit: ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f
There was a problem copying the output.
Did the run complete?
Is the output path correct? output
The run will continue, and this commit will be
considered unresolved.
===========================================
ISSUE WITH COMMIT DETECTED: 50a5528a55591d69e8b704dccebe1e7d6baa2669 differs from ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f
Finding all BIT_CHANGING commits in range: ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f...50a5528a55591d69e8b704dccebe1e7d6baa2669
Checking out 665f3896481654acdb49de9afae25d7a9b24a81c
Running: 'python compile.py -gpu openacc'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
Running: 'python run_scripts/run_scm_all.py -min_cases -params clubb_params_multi_col.in'
================== WARNING ==================
Commit: 665f3896481654acdb49de9afae25d7a9b24a81c
There was a problem copying the output.
Did the run complete?
Is the output path correct? output
The run will continue, and this commit will be
considered unresolved.
===========================================
Commit ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f already failed. Will not run again
Checking out f3de007e9528afc6cc2d71090bce5c6c53337152
Running: 'python compile.py -gpu openacc'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'python run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
Running: 'python run_scripts/run_scm_all.py -min_cases -params clubb_params_multi_col.in'
================== WARNING ==================
Commit: f3de007e9528afc6cc2d71090bce5c6c53337152
There was a problem copying the output.
Did the run complete?
Is the output path correct? output
The run will continue, and this commit will be
considered unresolved.
===========================================
Commit 665f3896481654acdb49de9afae25d7a9b24a81c already failed. Will not run again
Commit 50a5528a55591d69e8b704dccebe1e7d6baa2669 already failed. Will not run again
Commit f3de007e9528afc6cc2d71090bce5c6c53337152 already failed. Will not run again
Found:
665f3896481654acdb49de9afae25d7a9b24a81c
f3de007e9528afc6cc2d71090bce5c6c53337152
50a5528a55591d69e8b704dccebe1e7d6baa2669
=============================== Test Results ===============================
Commit Range Checked = ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f...50a5528a55591d69e8b704dccebe1e7d6baa2669
New Unresolved Commits:
665f3896481654acdb49de9afae25d7a9b24a81c
f3de007e9528afc6cc2d71090bce5c6c53337152
50a5528a55591d69e8b704dccebe1e7d6baa2669
No fake BIT_CHANGING commits found.
Remaining Unresolved Commits (oldest commit is listed first):
665f3896481654acdb49de9afae25d7a9b24a81c
f3de007e9528afc6cc2d71090bce5c6c53337152
50a5528a55591d69e8b704dccebe1e7d6baa2669
=============================== Updating Config File ===============================
Saving into UnresolvedCommits: 665f3896481654acdb49de9afae25d7a9b24a81c
f3de007e9528afc6cc2d71090bce5c6c53337152
50a5528a55591d69e8b704dccebe1e7d6baa2669
Ignoring 50a5528a55591d69e8b704dccebe1e7d6baa2669 since it failed to produce output.
Ignoring f3de007e9528afc6cc2d71090bce5c6c53337152 since it failed to produce output.
Ignoring 665f3896481654acdb49de9afae25d7a9b24a81c since it failed to produce output.
=============================== Cleanup ===============================
Not removing any generated output.
================== Unresolved Commit Status ==================
Remaining Unresolved Commits (oldest commit is listed first):
665f3896481654acdb49de9afae25d7a9b24a81c
f3de007e9528afc6cc2d71090bce5c6c53337152
50a5528a55591d69e8b704dccebe1e7d6baa2669
================== FAILED Commits ==================
These are the commits which entirely failed to produce output:
50a5528a55591d69e8b704dccebe1e7d6baa2669
ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f
665f3896481654acdb49de9afae25d7a9b24a81c
f3de007e9528afc6cc2d71090bce5c6c53337152
Exiting with code: 1
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