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Started by user Gunther Huebler Obtained jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/clubb.git > git init /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 50a5528a55591d69e8b704dccebe1e7d6baa2669 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 50a5528a55591d69e8b704dccebe1e7d6baa2669 # timeout=10 Commit message: "Small bug fix in fill_holes_parallel on GPU" > git rev-list --no-walk 50a5528a55591d69e8b704dccebe1e7d6baa2669 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config mkdir: cannot create directory ‘/CLUBB_current’: Permission denied mkdir: cannot create directory ‘/CLUBB_previous’: Permission denied mv: cannot stat '/CLUBB_current/*.ctl': No such file or directory mv: cannot stat '/CLUBB_current/*.dat': No such file or directory mv: cannot stat '/CLUBB_current/*.nc': No such file or directory mv: cannot stat '/CLUBB_current/*.txt': No such file or directory mkdir: cannot create directory ‘/CLUBB_current’: Permission denied mkdir: cannot create directory ‘/CLUBB_previous’: Permission denied mv: cannot stat '/CLUBB_current/*.ctl': No such file or directory mv: cannot stat '/CLUBB_current/*.dat': No such file or directory mv: cannot stat '/CLUBB_current/*.nc': No such file or directory mv: cannot stat '/CLUBB_current/*.txt': No such file or directory mkdir: cannot create directory ‘/CLUBB_current’: Permission denied mkdir: cannot create directory ‘/CLUBB_previous’: Permission denied mv: cannot stat '/CLUBB_current/*.ctl': No such file or directory mv: cannot stat '/CLUBB_current/*.dat': No such file or directory mv: cannot stat '/CLUBB_current/*.nc': No such file or directory mv: cannot stat '/CLUBB_current/*.txt': No such file or directory mkdir: cannot create directory ‘/CLUBB_current’: Permission denied mkdir: cannot create directory ‘/CLUBB_previous’: Permission denied mv: cannot stat '/CLUBB_current/*.ctl': No such file or directory mv: cannot stat '/CLUBB_current/*.dat': No such file or directory mv: cannot stat '/CLUBB_current/*.nc': No such file or directory mv: cannot stat '/CLUBB_current/*.txt': No such file or directory =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin https://github.com/larson-group/clubb.git Output Save Mode: all Using branch: master Making list from 'UnresolvedCommits': CheckRange = True: Getting commit range Run Output Path: output Run commands: ['rm -rf output', '\nmkdir output', "\nsed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", '\nrun_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in', '\nrun_scripts/run_scm_all.bash -min_cases -params clubb_params_multi_col.in'] Diffing command: run_scripts/run_bindiff_all.py =============================== Running Test =============================== Parsing message from commit: 665f3896481654acdb49de9afae25d7a9b24a81c Parsing message from commit: f3de007e9528afc6cc2d71090bce5c6c53337152 Parsing message from commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669 Checking Commit: 665f3896481654acdb49de9afae25d7a9b24a81c Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: f3de007e9528afc6cc2d71090bce5c6c53337152 Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669 Running: final commit to check, not labelled BIT_CHANGING Checking out 50a5528a55591d69e8b704dccebe1e7d6baa2669 Running: 'rm -rf output' Running: 'mkdir output' Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in' Running: 'run_scripts/run_scm_all.bash -min_cases -params clubb_params_multi_col.in' ================== WARNING ================== Commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669 There was a problem copying the output. Did the run complete? Is the output path correct? output The run will continue, and this commit will be considered unresolved. =========================================== Checking out ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f Running: 'rm -rf output' Running: 'mkdir output' Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in' Running: 'run_scripts/run_scm_all.bash -min_cases -params clubb_params_multi_col.in' ================== WARNING ================== Commit: ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f There was a problem copying the output. Did the run complete? Is the output path correct? output The run will continue, and this commit will be considered unresolved. =========================================== ISSUE WITH COMMIT DETECTED: 50a5528a55591d69e8b704dccebe1e7d6baa2669 differs from ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f Finding all BIT_CHANGING commits in range: ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f...50a5528a55591d69e8b704dccebe1e7d6baa2669 Checking out 665f3896481654acdb49de9afae25d7a9b24a81c Running: 'rm -rf output' Running: 'mkdir output' Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in' Running: 'run_scripts/run_scm_all.bash -min_cases -params clubb_params_multi_col.in' ================== WARNING ================== Commit: 665f3896481654acdb49de9afae25d7a9b24a81c There was a problem copying the output. Did the run complete? Is the output path correct? output The run will continue, and this commit will be considered unresolved. =========================================== Commit ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f already failed. Will not run again Checking out f3de007e9528afc6cc2d71090bce5c6c53337152 Running: 'rm -rf output' Running: 'mkdir output' Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in' Running: 'run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in' Running: 'run_scripts/run_scm_all.bash -min_cases -params clubb_params_multi_col.in' ================== WARNING ================== Commit: f3de007e9528afc6cc2d71090bce5c6c53337152 There was a problem copying the output. Did the run complete? Is the output path correct? output The run will continue, and this commit will be considered unresolved. =========================================== Commit 665f3896481654acdb49de9afae25d7a9b24a81c already failed. Will not run again Commit 50a5528a55591d69e8b704dccebe1e7d6baa2669 already failed. Will not run again Commit f3de007e9528afc6cc2d71090bce5c6c53337152 already failed. Will not run again Found: 665f3896481654acdb49de9afae25d7a9b24a81c f3de007e9528afc6cc2d71090bce5c6c53337152 50a5528a55591d69e8b704dccebe1e7d6baa2669 =============================== Test Results =============================== Commit Range Checked = ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f...50a5528a55591d69e8b704dccebe1e7d6baa2669 New Unresolved Commits: 665f3896481654acdb49de9afae25d7a9b24a81c f3de007e9528afc6cc2d71090bce5c6c53337152 50a5528a55591d69e8b704dccebe1e7d6baa2669 No fake BIT_CHANGING commits found. Remaining Unresolved Commits (oldest commit is listed first): 665f3896481654acdb49de9afae25d7a9b24a81c f3de007e9528afc6cc2d71090bce5c6c53337152 50a5528a55591d69e8b704dccebe1e7d6baa2669 =============================== Updating Config File =============================== Saving into UnresolvedCommits: 665f3896481654acdb49de9afae25d7a9b24a81c f3de007e9528afc6cc2d71090bce5c6c53337152 50a5528a55591d69e8b704dccebe1e7d6baa2669 Ignoring 50a5528a55591d69e8b704dccebe1e7d6baa2669 since it failed to produce output. Ignoring f3de007e9528afc6cc2d71090bce5c6c53337152 since it failed to produce output. Ignoring 665f3896481654acdb49de9afae25d7a9b24a81c since it failed to produce output. =============================== Cleanup =============================== Not removing any generated output. ================== Unresolved Commit Status ================== Remaining Unresolved Commits (oldest commit is listed first): 665f3896481654acdb49de9afae25d7a9b24a81c f3de007e9528afc6cc2d71090bce5c6c53337152 50a5528a55591d69e8b704dccebe1e7d6baa2669 ================== FAILED Commits ================== These are the commits which entirely failed to produce output: 50a5528a55591d69e8b704dccebe1e7d6baa2669 ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f 665f3896481654acdb49de9afae25d7a9b24a81c f3de007e9528afc6cc2d71090bce5c6c53337152 Exiting with code: 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE