+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load nvhpc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config
rm: missing operand
Try 'rm --help' for more information.
mkdir: missing operand
Try 'mkdir --help' for more information.
Usage: sed [OPTION]... {script-only-if-no-other-script} [input-file]...
-n, --quiet, --silent
suppress automatic printing of pattern space
--debug
annotate program execution
-e script, --expression=script
add the script to the commands to be executed
-f script-file, --file=script-file
add the contents of script-file to the commands to be executed
--follow-symlinks
follow symlinks when processing in place
-i[SUFFIX], --in-place[=SUFFIX]
edit files in place (makes backup if SUFFIX supplied)
-l N, --line-length=N
specify the desired line-wrap length for the `l' command
--posix
disable all GNU extensions.
-E, -r, --regexp-extended
use extended regular expressions in the script
(for portability use POSIX -E).
-s, --separate
consider files as separate rather than as a single,
continuous long stream.
--sandbox
operate in sandbox mode (disable e/r/w commands).
-u, --unbuffered
load minimal amounts of data from the input files and flush
the output buffers more often
-z, --null-data
separate lines by NUL characters
--help display this help and exit
--version output version information and exit
If no -e, --expression, -f, or --file option is given, then the first
non-option argument is taken as the sed script to interpret. All
remaining arguments are names of input files; if no input files are
specified, then the standard input is read.
GNU sed home page: <https://www.gnu.org/software/sed/>.
General help using GNU software: <https://www.gnu.org/gethelp/>.
Usage: sed [OPTION]... {script-only-if-no-other-script} [input-file]...
-n, --quiet, --silent
suppress automatic printing of pattern space
--debug
annotate program execution
-e script, --expression=script
add the script to the commands to be executed
-f script-file, --file=script-file
add the contents of script-file to the commands to be executed
--follow-symlinks
follow symlinks when processing in place
-i[SUFFIX], --in-place[=SUFFIX]
edit files in place (makes backup if SUFFIX supplied)
-l N, --line-length=N
specify the desired line-wrap length for the `l' command
--posix
disable all GNU extensions.
-E, -r, --regexp-extended
use extended regular expressions in the script
(for portability use POSIX -E).
-s, --separate
consider files as separate rather than as a single,
continuous long stream.
--sandbox
operate in sandbox mode (disable e/r/w commands).
-u, --unbuffered
load minimal amounts of data from the input files and flush
the output buffers more often
-z, --null-data
separate lines by NUL characters
--help display this help and exit
--version output version information and exit
If no -e, --expression, -f, or --file option is given, then the first
non-option argument is taken as the sed script to interpret. All
remaining arguments are names of input files; if no input files are
specified, then the standard input is read.
GNU sed home page: <https://www.gnu.org/software/sed/>.
General help using GNU software: <https://www.gnu.org/gethelp/>.
Usage: sed [OPTION]... {script-only-if-no-other-script} [input-file]...
-n, --quiet, --silent
suppress automatic printing of pattern space
--debug
annotate program execution
-e script, --expression=script
add the script to the commands to be executed
-f script-file, --file=script-file
add the contents of script-file to the commands to be executed
--follow-symlinks
follow symlinks when processing in place
-i[SUFFIX], --in-place[=SUFFIX]
edit files in place (makes backup if SUFFIX supplied)
-l N, --line-length=N
specify the desired line-wrap length for the `l' command
--posix
disable all GNU extensions.
-E, -r, --regexp-extended
use extended regular expressions in the script
(for portability use POSIX -E).
-s, --separate
consider files as separate rather than as a single,
continuous long stream.
--sandbox
operate in sandbox mode (disable e/r/w commands).
-u, --unbuffered
load minimal amounts of data from the input files and flush
the output buffers more often
-z, --null-data
separate lines by NUL characters
--help display this help and exit
--version output version information and exit
If no -e, --expression, -f, or --file option is given, then the first
non-option argument is taken as the sed script to interpret. All
remaining arguments are names of input files; if no input files are
specified, then the standard input is read.
GNU sed home page: <https://www.gnu.org/software/sed/>.
General help using GNU software: <https://www.gnu.org/gethelp/>.
usage: create_multi_col_params.py [-h] -n N [-param_file PARAM_FILE]
[-l_multi_col_output L_MULTI_COL_OUTPUT]
[-out_file OUT_FILE] [-mode MODE]
[-calls_per_out CALLS_PER_OUT]
[-mirror MIRROR] [-tweak_list TWEAK_LIST]
create_multi_col_params.py: error: the following arguments are required: -n
rm: missing operand
Try 'rm --help' for more information.
mkdir: missing operand
Try 'mkdir --help' for more information.
Usage: sed [OPTION]... {script-only-if-no-other-script} [input-file]...
-n, --quiet, --silent
suppress automatic printing of pattern space
--debug
annotate program execution
-e script, --expression=script
add the script to the commands to be executed
-f script-file, --file=script-file
add the contents of script-file to the commands to be executed
--follow-symlinks
follow symlinks when processing in place
-i[SUFFIX], --in-place[=SUFFIX]
edit files in place (makes backup if SUFFIX supplied)
-l N, --line-length=N
specify the desired line-wrap length for the `l' command
--posix
disable all GNU extensions.
-E, -r, --regexp-extended
use extended regular expressions in the script
(for portability use POSIX -E).
-s, --separate
consider files as separate rather than as a single,
continuous long stream.
--sandbox
operate in sandbox mode (disable e/r/w commands).
-u, --unbuffered
load minimal amounts of data from the input files and flush
the output buffers more often
-z, --null-data
separate lines by NUL characters
--help display this help and exit
--version output version information and exit
If no -e, --expression, -f, or --file option is given, then the first
non-option argument is taken as the sed script to interpret. All
remaining arguments are names of input files; if no input files are
specified, then the standard input is read.
GNU sed home page: <https://www.gnu.org/software/sed/>.
General help using GNU software: <https://www.gnu.org/gethelp/>.
Usage: sed [OPTION]... {script-only-if-no-other-script} [input-file]...
-n, --quiet, --silent
suppress automatic printing of pattern space
--debug
annotate program execution
-e script, --expression=script
add the script to the commands to be executed
-f script-file, --file=script-file
add the contents of script-file to the commands to be executed
--follow-symlinks
follow symlinks when processing in place
-i[SUFFIX], --in-place[=SUFFIX]
edit files in place (makes backup if SUFFIX supplied)
-l N, --line-length=N
specify the desired line-wrap length for the `l' command
--posix
disable all GNU extensions.
-E, -r, --regexp-extended
use extended regular expressions in the script
(for portability use POSIX -E).
-s, --separate
consider files as separate rather than as a single,
continuous long stream.
--sandbox
operate in sandbox mode (disable e/r/w commands).
-u, --unbuffered
load minimal amounts of data from the input files and flush
the output buffers more often
-z, --null-data
separate lines by NUL characters
--help display this help and exit
--version output version information and exit
If no -e, --expression, -f, or --file option is given, then the first
non-option argument is taken as the sed script to interpret. All
remaining arguments are names of input files; if no input files are
specified, then the standard input is read.
GNU sed home page: <https://www.gnu.org/software/sed/>.
General help using GNU software: <https://www.gnu.org/gethelp/>.
Usage: sed [OPTION]... {script-only-if-no-other-script} [input-file]...
-n, --quiet, --silent
suppress automatic printing of pattern space
--debug
annotate program execution
-e script, --expression=script
add the script to the commands to be executed
-f script-file, --file=script-file
add the contents of script-file to the commands to be executed
--follow-symlinks
follow symlinks when processing in place
-i[SUFFIX], --in-place[=SUFFIX]
edit files in place (makes backup if SUFFIX supplied)
-l N, --line-length=N
specify the desired line-wrap length for the `l' command
--posix
disable all GNU extensions.
-E, -r, --regexp-extended
use extended regular expressions in the script
(for portability use POSIX -E).
-s, --separate
consider files as separate rather than as a single,
continuous long stream.
--sandbox
operate in sandbox mode (disable e/r/w commands).
-u, --unbuffered
load minimal amounts of data from the input files and flush
the output buffers more often
-z, --null-data
separate lines by NUL characters
--help display this help and exit
--version output version information and exit
If no -e, --expression, -f, or --file option is given, then the first
non-option argument is taken as the sed script to interpret. All
remaining arguments are names of input files; if no input files are
specified, then the standard input is read.
GNU sed home page: <https://www.gnu.org/software/sed/>.
General help using GNU software: <https://www.gnu.org/gethelp/>.
usage: create_multi_col_params.py [-h] -n N [-param_file PARAM_FILE]
[-l_multi_col_output L_MULTI_COL_OUTPUT]
[-out_file OUT_FILE] [-mode MODE]
[-calls_per_out CALLS_PER_OUT]
[-mirror MIRROR] [-tweak_list TWEAK_LIST]
create_multi_col_params.py: error: the following arguments are required: -n
Directory 1 is 50a5528a55591d69e8b704dccebe1e7d6baa2669
Directory 2 is ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f
Using reporting threshold: 0.0
The following cases will be compared: []
SUMMARY:
Linux diff did not detect any differences in the compared files.
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin https://github.com/larson-group/clubb.git
Output Save Mode: all
Using branch: master
Making list from 'UnresolvedCommits':
- 665f3896481654acdb49de9afae25d7a9b24a81c
- f3de007e9528afc6cc2d71090bce5c6c53337152
- 50a5528a55591d69e8b704dccebe1e7d6baa2669
CheckRange = True: Getting commit range
Run Output Path: output
Run commands: ['rm -rf output', '\nmkdir output', "\nsed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", "\nsed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in", '\nrun_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in', '\nrun_scripts/run_scm_all.bash -min_cases -params clubb_params_multi_col.in']
Diffing command: run_scripts/run_bindiff_all.py
=============================== Running Test ===============================
Parsing message from commit: 665f3896481654acdb49de9afae25d7a9b24a81c
Parsing message from commit: f3de007e9528afc6cc2d71090bce5c6c53337152
Parsing message from commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669
Checking Commit: 665f3896481654acdb49de9afae25d7a9b24a81c
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: f3de007e9528afc6cc2d71090bce5c6c53337152
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669
Running: final commit to check, not labelled BIT_CHANGING
Checking out 50a5528a55591d69e8b704dccebe1e7d6baa2669
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
Running: 'run_scripts/run_scm_all.bash -min_cases -params clubb_params_multi_col.in'
Checking out ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'sed -i 's:lh_straight_mc.*:lh_straight_mc = true:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:penta_solve_method.*:penta_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'sed -i 's:tridiag_solve_method.*:tridiag_solve_method = 2:g' input/tunable_parameters/configurable_model_flags.in'
Running: 'run_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in'
Running: 'run_scripts/run_scm_all.bash -min_cases -params clubb_params_multi_col.in'
Diffing: 'run_scripts/run_bindiff_all.py 50a5528a55591d69e8b704dccebe1e7d6baa2669 ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f'
=============================== Test Results ===============================
Commit Range Checked = ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f...50a5528a55591d69e8b704dccebe1e7d6baa2669
No new Unresolved commits found.
No fake BIT_CHANGING commits found.
Remaining Unresolved Commits (oldest commit is listed first):
665f3896481654acdb49de9afae25d7a9b24a81c
f3de007e9528afc6cc2d71090bce5c6c53337152
50a5528a55591d69e8b704dccebe1e7d6baa2669
=============================== Updating Config File ===============================
Saving into UnresolvedCommits: 665f3896481654acdb49de9afae25d7a9b24a81c
f3de007e9528afc6cc2d71090bce5c6c53337152
50a5528a55591d69e8b704dccebe1e7d6baa2669
Saving into BaselineCommit: 50a5528a55591d69e8b704dccebe1e7d6baa2669
=============================== Cleanup ===============================
Not removing any generated output.
RENAMING 50a5528a55591d69e8b704dccebe1e7d6baa2669 to latest_revision_validated_50a5528a55591d69e8b704dccebe1e7d6baa2669
================== Unresolved Commit Status ==================
Remaining Unresolved Commits (oldest commit is listed first):
665f3896481654acdb49de9afae25d7a9b24a81c
f3de007e9528afc6cc2d71090bce5c6c53337152
50a5528a55591d69e8b704dccebe1e7d6baa2669
Exiting with code: 1
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