Console Output

Started by user Gunther Huebler
Obtained jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfile from git https://github.com/larson-group/clubb.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on mitch in /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/clubb.git
 > git init /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test # timeout=10
Fetching upstream changes from https://github.com/larson-group/clubb.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
 > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision 50a5528a55591d69e8b704dccebe1e7d6baa2669 (refs/remotes/origin/master)
Commit message: "Small bug fix in fill_holes_parallel on GPU"
 > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 50a5528a55591d69e8b704dccebe1e7d6baa2669 # timeout=10
 > git rev-list --no-walk 50a5528a55591d69e8b704dccebe1e7d6baa2669 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Update sys_admin Repo)
[Pipeline] sh
+ git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull
Already up to date.
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run Python Test)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load nvhpc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_multi_col_gpu_nvhpc_test_config

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test

Using /home/jenkins/workspace/clubb_BFB_multi_col_gpu_nvhpc_test with origin https://github.com/larson-group/clubb.git

Output Save Mode: all

Using branch: master

Making list from 'UnresolvedCommits':

CheckRange = True: Getting commit range

Run Output Path: output

Run commands: ['compile.py -gpu openacc', '\nrm -rf output', '\nmkdir output', '\nsed -i "s:lh_straight_mc.*:lh_straight_mc = true:g" input/tunable_parameters/configurable_model_flags.in', '\nsed -i "s:penta_solve_method.*:penta_solve_method = 2:g" input/tunable_parameters/configurable_model_flags.in', '\nsed -i "s:tridiag_solve_method.*:tridiag_solve_method = 2:g" input/tunable_parameters/configurable_model_flags.in', '\nrun_scripts/create_multi_col_params.py -n 4 -out_file run_scripts/clubb_params_multi_col.in', '\nrun_scripts/run_scm_all.bash -min_cases -params clubb_params_multi_col.in']

Diffing command: run_scripts/run_bindiff_all.py

=============================== Running Test ===============================

Parsing message from commit: 665f3896481654acdb49de9afae25d7a9b24a81c
Parsing message from commit: f3de007e9528afc6cc2d71090bce5c6c53337152
Parsing message from commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669

Checking Commit: 665f3896481654acdb49de9afae25d7a9b24a81c
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: f3de007e9528afc6cc2d71090bce5c6c53337152
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out 50a5528a55591d69e8b704dccebe1e7d6baa2669
	Running: 'compile.py -gpu openacc'

================== ERROR ==================
Commit:  50a5528a55591d69e8b704dccebe1e7d6baa2669

Unexpected error: [Errno 2] No such file or directory: 'compile.py'

There was a problem with a run command.
===========================================

System Exit detected. Calling test.cleanup()

=============================== Cleanup ===============================

Not removing any generated output.

Exiting with code: 1
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] emailext
#130 is still in progress; ignoring for purposes of comparison
Sending email to: messnermet@uwm.edu
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE