Skipping 3 KB.. Full Log

Avoid second fetch
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision e92c2f24486a32610935ff4eede3512c67e313ea (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f e92c2f24486a32610935ff4eede3512c67e313ea # timeout=10
Commit message: "Add JAX comparison plots"
 > git rev-list --no-walk 04ff5df702bc2ad372325353ee19dde5a2fc3fc1 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Update sys_admin Repo)
[Pipeline] sh
+ git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull
Already up to date.
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run Python Test)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_gfortran_test_config
-- The Fortran compiler identification is GNU 13.1.0
-- The C compiler identification is GNU 13.1.0
-- The CXX compiler identification is GNU 13.1.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/gfortran - skipped
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Compiling with double precision
-- Performing Test NETCDF_ABI_COMPATIBLE
-- Performing Test NETCDF_ABI_COMPATIBLE - Success
-- SUCCESS: netcdf-fortran found.
--   -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib/libnetcdff.so
--   -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/workspace/clubb_BFB_gfortran_test/build/gcc_DEBUG_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/clubb_BFB_gfortran_test/cmake/toolchains/linux_x86_64_gcc.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_BFB_gfortran_test/build/gcc_DEBUG_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble
about to cmnake /home/jenkins/workspace/clubb_BFB_gfortran_test/build/gcc_DEBUG_PRECdouble
Running CMake configure...
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/home/jenkins/workspace/clubb_BFB_gfortran_test/src/CLUBB_core/penta_bicgstab_solver.F90:140:10:

  140 |       if ( norm_rhs == 0.0) then
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Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
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/home/jenkins/workspace/clubb_BFB_gfortran_test/src/CLUBB_core/remapping_module.F90:1212:43:

 1212 |             if(f(i,k+1)*f(i,k-1)<zero .and. df2(i,k)/=zero) then
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Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/CLUBB_core/remapping_module.F90:1106:15:

 1106 |             if(dm(i) == zero) then
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Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
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/home/jenkins/workspace/clubb_BFB_gfortran_test/src/CLUBB_core/parameters_tunable.F90:1822:30:

 1822 |   subroutine unpack_parameters &
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Warning: 'unpack_parameters' defined but not used [-Wunused-function]
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[777/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/transform_to_pdf_module.F90.o
[778/923] Linking Fortran static library src/Radiation/BUGSrad/libbugsrad_lib.a
[779/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/mt95.F90.o
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[783/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_importance_sample_module.F90.o
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/SILHS/silhs_importance_sample_module.F90:642:62:

  637 |       do category=1, num_importance_categories
      |                                              2                
......
  642 |                rand_vect(sample) <  category_cumulative_probs(category+1) ) then
      |                                                              1
Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript]
[784/923] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_driver_module.F90.o
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[786/923] Linking Fortran static library src/SILHS/libsilhs_lib.a
[787/923] Generating Fortran dyndep file src/Radiation/CMakeFiles/radiation_lib.dir/Fortran.dd
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[789/923] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/parameters_radiation.F90.o
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[801/923] Linking Fortran static library src/Microphys/Morrison_microphys/libmorrison_microphys_lib.a
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[805/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran_state.f90.o
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Numerical_recipes/ran_state.f90:8:59:

    8 |   INTEGER(K4B), PARAMETER :: hg=huge(1_K4B), hgm=-hg, hgng=hgm-1
      |                                                           1
Warning: Integer outside symmetric range implied by Standard Fortran at (1)
[806/923] Building Fortran object src/Numerical_recipes/CMakeFiles/numerical_recipes_lib.dir/ran1_s.f90.o
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[809/923] Linking Fortran static library src/Numerical_recipes/libnumerical_recipes_lib.a
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[813/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_names.F90.o
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[815/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/stat_file_module.F90.o
[816/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/hydrostatic_module.F90.o
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[818/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_reader.F90.o
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Input_fields/input_reader.F90:498:28:

  491 |     do i=1, dim_grid
      |                    2        
......
  498 |         if ( grid(i) < grid(i-1) ) then
      |                            1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
[819/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/corr_varnce_input_reader.F90.o
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[821/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_interpret.F90.o
[822/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_core/readiopdata_core_module.F90.o
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1038:15:

 1038 |             if(divT_in(i,nlev+1)==missing_value) divT_in(i,nlev+1) = &
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1040:15:

 1040 |             if(vertdivT_in(i,nlev+1)==missing_value) vertdivT_in(i,nlev+1) = &
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1042:15:

 1042 |             if(divT3d_in(i,nlev+1)==missing_value) divT3d_in(i,nlev+1) = &
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1045:15:

 1045 |             if(divq_in(i,nlev+1)==missing_value) divq_in(i,nlev+1) = &
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1047:15:

 1047 |             if(vertdivq_in(i,nlev+1)==missing_value) vertdivq_in(i,nlev+1) = &
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1049:15:

 1049 |             if(divq3d_in(i,nlev+1)==missing_value) divq3d_in(i,nlev+1) = &
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:356:13:

  356 |      if( ANY(Ts_in == 0.0) ) then
      |             1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:620:12:

  620 |          if(T_in(i,nlev+1)/=missing_value) then
      |            1
Warning: Inequality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:636:12:

  636 |          if(T_in(i,nlev+1)==missing_value) &
      |            1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:638:12:

  638 |          if(q_in(i,nlev+1)==missing_value) &
      |            1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:640:12:

  640 |          if(u_in(i,nlev+1)==missing_value) &
      |            1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:642:12:

  642 |          if(v_in(i,nlev+1)==missing_value) &
      |            1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:647:15:

  647 |             if(omega_in(i,nlev+1)==missing_value) omega_in(i,nlev+1) = &
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:651:15:

  651 |             if(w_in(i,nlev+1)==missing_value) w_in(i,nlev+1) = &
      |               1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:658:12:

  658 |          if(ug_in(i,nlev+1)==missing_value) &
      |            1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:660:12:

  660 |          if(vg_in(i,nlev+1)==missing_value) &
      |            1
Warning: Equality comparison for REAL(4) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1252:42:

 1252 |   character     dim_name*( NF90_MAX_NAME )
      |                                          1
Warning: Unused variable 'dim_name' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1254:33:

 1254 |   integer     var_ndims, dim_size, dims_set, i, n, var_type
      |                                 1
Warning: Unused variable 'dim_size' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1254:43:

 1254 |   integer     var_ndims, dim_size, dims_set, i, n, var_type
      |                                           1
Warning: Unused variable 'dims_set' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1254:46:

 1254 |   integer     var_ndims, dim_size, dims_set, i, n, var_type
      |                                              1
Warning: Unused variable 'i' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1237:60:

 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, &
      |                                                            1
Warning: Unused dummy argument 'nlev' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1237:54:

 1237 | subroutine get_netcdf_var2d_real( NCID, varName, ntime, nlev, &
      |                                                      1
Warning: Unused dummy argument 'ntime' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1238:23:

 1238 |      var, use_NF90_REAL, status, required)
      |                       1
Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:1167:67:

 1167 | subroutine get_netcdf_var1d_real( NCID, varName, var, use_NF90_REAL, &
      |                                                                   1
Warning: Unused dummy argument 'use_nf90_real' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:751:51:

  751 |                                get_add_surface_data, ntime, &
      |                                                   1
Warning: Unused dummy argument 'get_add_surface_data' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:750:81:

  750 | subroutine readiopdata_core_sfc( masterproc, iopfilepath, scamiop_from_global_cam, SFC_FLX_FXD, &
      |                                                                                 1
Warning: Unused dummy argument 'scamiop_from_global_cam' at (1) [-Wunused-dummy-argument]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:290:32:

  290 |    integer :: STATUS, i, n, nlat, nlon
      |                                1
Warning: Unused variable 'nlat' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:290:38:

  290 |    integer :: STATUS, i, n, nlat, nlon
      |                                      1
Warning: Unused variable 'nlon' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_core/readiopdata_core_module.F90:291:19:

  291 |    integer :: varID, NCID
      |                   1
Warning: Unused variable 'varid' declared at (1) [-Wunused-variable]
[823/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/__/readiopdata_module.F90.o
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_module.F90:260:16:

  260 |     integer :: k
      |                1
Warning: Unused variable 'k' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_module.F90:264:17:

  264 |       qtm_forcing  ! Specified total water spec. humidity tendency    [kg/kg/s]
      |                 1
Warning: Unused variable 'qtm_forcing' declared at (1) [-Wunused-variable]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/readiopdata_module.F90:243:31:

  243 | subroutine readiopdata_frc( rtm, gr, thlm_forcing, rtm_forcing )
      |                               1
Warning: Unused dummy argument 'rtm' at (1) [-Wunused-dummy-argument]
[824/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/sounding.F90.o
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Input_fields/sounding.F90:39:8:

   39 |     use constants_clubb, only:  &
      |        1
Warning: Unused parameter 'kappa' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Input_fields/sounding.F90:57:8:

   57 |     use input_names, only: &
      |        1
Warning: Unused parameter 'omega_name' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Input_fields/sounding.F90:39:8:

   39 |     use constants_clubb, only:  &
      |        1
Warning: Unused parameter 'p0' which has been explicitly imported at (1) [-Wunused-parameter]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Input_fields/sounding.F90:165:13:

  165 |       p_in_Pa, & ! Pressure                               [Pa]
      |             1
Warning: Array 'p_in_pa' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Input_fields/sounding.F90:160:8:

  160 |       rt,      & ! Total water mixing ratio sounding      [kg/kg]
      |        1
Warning: Array 'rt' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Input_fields/sounding.F90:166:10:

  166 |       subs       ! Vertical velocity sounding             [m/s or Pa/s]
      |          1
Warning: Array 'subs' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Input_fields/sounding.F90:159:11:

  159 |       theta,   & ! Liquid potential temperature sounding  [K]
      |           1
Warning: Array 'theta' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Input_fields/sounding.F90:161:7:

  161 |       u,       & ! u wind sounding                        [m/s]
      |       1
Warning: Array 'u' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Input_fields/sounding.F90:163:8:

  163 |       ug,      & ! u geostrophic wind sounding            [m/s]
      |        1
Warning: Array 'ug' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Input_fields/sounding.F90:162:7:

  162 |       v,       & ! v wind sounding                        [m/s]
      |       1
Warning: Array 'v' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Input_fields/sounding.F90:164:8:

  164 |       vg,      & ! v geostrophic wind sounding            [m/s]
      |        1
Warning: Array 'vg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Input_fields/sounding.F90:158:7:

  158 |       z,       & ! Altitude                               [m]
      |       1
Warning: Array 'z' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
[825/923] Building Fortran object src/Input_fields/CMakeFiles/input_fields_lib.dir/input_fields.F90.o
[826/923] Linking Fortran static library src/Input_fields/libinput_fields_lib.a
[827/923] Generating Fortran dyndep file src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Fortran.dd
[828/923] Generating Fortran dyndep file src/Microphys/CMakeFiles/microphys_lib.dir/Fortran.dd
[829/923] Generating Fortran dyndep file src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/Fortran.dd
[830/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/diag_ustar_module.F90.o
[831/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o
[832/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/silhs_category_test.F90.o
[833/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/spec_hum_to_mixing_ratio.F90.o
[834/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_heaviside_tests.F90.o
[835/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o
[836/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Nc_Ncn_test.F90.o
[837/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o
[838/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/corr_cholesky_mtx_tests.F90.o
[839/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/smooth_min_max_tests.F90.o
[840/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/sfc_flux.F90.o
[841/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/hole_filling_tests.F90.o
[842/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o
[843/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o
[844/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/KK_integrals_tests.F90.o
[845/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o
[846/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o
[847/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3.F90.o
[848/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o
[849/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/G_unit_test_types/fill_holes_tests.F90:407:27:

  407 |                  .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
      |                           1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/G_unit_test_types/fill_holes_tests.F90:406:22:

  406 |             if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &
      |                      1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/G_unit_test_types/fill_holes_tests.F90:462:22:

  462 |             if ( any( field_rev_rev /= field ) ) then
      |                      1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/G_unit_test_types/fill_holes_tests.F90:221:27:

  221 |                  .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
      |                           1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/G_unit_test_types/fill_holes_tests.F90:220:22:

  220 |             if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &
      |                      1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/G_unit_test_types/fill_holes_tests.F90:275:22:

  275 |             if ( any( field_rev_rev /= field ) ) then
      |                      1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[850/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o
[851/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/w_up_in_cloud_tests.F90.o
[852/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o
[853/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Microphys/ice_dfsn_module.F90:282:27:

  214 |     do k = gr%nzt, 1, -1
      |                        2   
......
  282 |           mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k) + dmass_ice_cryst(i,k)
      |                           1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Microphys/ice_dfsn_module.F90:296:27:

  214 |     do k = gr%nzt, 1, -1
      |                        2   
......
  296 |           mass_ice_cryst(i,k-1) = mass_ice_cryst(i,k)
      |                           1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
[854/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/mu_sigma_hm_tests.F90.o
[855/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o
[856/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o
[857/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o
[858/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o
[859/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o
[860/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o
[861/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o
[862/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_nov02.F90.o
[863/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm.F90.o
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[866/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_97.F90.o
[867/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/jun25.F90.o
[868/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/arm_3year.F90.o
[869/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cloud_feedback.F90.o
[870/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/clex9_oct14.F90.o
[871/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o
[872/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/cobra.F90.o
[873/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/nov11.F90.o
[874/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/bomex.F90.o
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/Benchmark_cases/bomex.F90:22:48:

   22 |                           gr, rtm, l_readiopdata, &
      |                                                1
Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument]
[875/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls3_night.F90.o
[876/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/twp_ice.F90.o
[877/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o
[878/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o
[879/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/astex_a209.F90.o
[880/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o
[881/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex_long.F90.o
[882/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o
[883/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o
[884/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o
[885/923] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o
[886/923] Linking Fortran static library src/G_unit_test_types/libG_unit_test_lib.a
[887/923] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o
[888/923] Linking Fortran static library src/Benchmark_cases/libbenchmark_cases_lib.a
[889/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o
[890/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o
[891/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o
[892/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o
[893/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o
[894/923] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o
[895/923] Linking Fortran static library src/Microphys/libmicrophys_lib.a
[896/923] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_lib.dir/Fortran.dd
[897/923] Generating Fortran dyndep file src/CMakeFiles/G_unit_tests.dir/Fortran.dd
[898/923] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o
[899/923] Linking Fortran executable src/G_unit_tests
[900/923] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o
[901/923] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_driver.F90:5539:76:

 5539 |                                           p_sfc, rtm_sfc, rtm, l_readiopdata, & !thlm_sfc, &
      |                                                                            1
Warning: Unused dummy argument 'l_readiopdata' at (1) [-Wunused-dummy-argument]
[902/923] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_loss_driver.F90.o
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver.F90:255:28:

  255 |     is_finite_core_value = ( value == value ) .and. ( abs( value ) <= huge( value ) )
      |                            1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
[903/923] Linking Fortran static library src/libclubb_driver_lib.a
[904/923] Generating Fortran dyndep file src/CMakeFiles/clubb_loss_driver_test.dir/Fortran.dd
[905/923] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_test.dir/Fortran.dd
[906/923] Generating Fortran dyndep file src/CMakeFiles/clubb_standalone_loss.dir/Fortran.dd
[907/923] Generating Fortran dyndep file src/CMakeFiles/clubb_standalone.dir/Fortran.dd
[908/923] Generating Fortran dyndep file src/CMakeFiles/clubb_thread_test.dir/Fortran.dd
[909/923] Generating Fortran dyndep file src/CMakeFiles/clubb_tuner.dir/Fortran.dd
[910/923] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o
[911/923] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o
[912/923] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o
[913/923] Building Fortran object src/CMakeFiles/clubb_standalone_loss.dir/clubb_standalone_loss.F90.o
[914/923] Linking Fortran executable src/clubb_thread_test
[915/923] Linking Fortran executable src/clubb_standalone
[916/923] Linking Fortran executable src/clubb_driver_test
[917/923] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o
[918/923] Building Fortran object src/CMakeFiles/clubb_loss_driver_test.dir/clubb_loss_driver_test.F90.o
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:273:14:

  273 |     if ( any( test_scaled_rmse /= reference_scaled_rmse ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:278:14:

  278 |     if ( any( test_correlation /= reference_correlation ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:283:14:

  283 |     if ( any( test_std_ratio /= reference_std_ratio ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:288:14:

  288 |     if ( any( test_centered_rmse_norm /= reference_centered_rmse_norm ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:293:14:

  293 |     if ( any( test_bias_norm /= reference_bias_norm ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:512:14:

  512 |     if ( any( clubb_params_all_1 /= clubb_params_all_2 ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:521:14:

  521 |          any( reinit_bias_norm_1 /= reinit_bias_norm_2 ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:520:14:

  520 |          any( reinit_centered_rmse_norm_1 /= reinit_centered_rmse_norm_2 ) .or. &
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:519:14:

  519 |          any( reinit_std_ratio_1 /= reinit_std_ratio_2 ) .or. &
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:518:14:

  518 |          any( reinit_correlation_1 /= reinit_correlation_2 ) .or. &
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:517:14:

  517 |     if ( any( reinit_scaled_rmse_1 /= reinit_scaled_rmse_2 ) .or. &
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:431:14:

  431 |     if ( all( tweaked_scaled_rmse == reference_scaled_rmse ) ) then
      |              1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:371:14:

  371 |          any( manual_bias_norm_2 /= manual_bias_norm_1 ) ) then
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:370:14:

  370 |          any( manual_centered_rmse_norm_2 /= manual_centered_rmse_norm_1 ) .or. &
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:369:14:

  369 |          any( manual_std_ratio_2 /= manual_std_ratio_1 ) .or. &
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:368:14:

  368 |          any( manual_correlation_2 /= manual_correlation_1 ) .or. &
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_BFB_gfortran_test/src/clubb_loss_driver_test.F90:367:14:

  367 |     if ( any( manual_scaled_rmse_2 /= manual_scaled_rmse_1 ) .or. &
      |              1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[919/923] Linking Fortran executable src/clubb_standalone_loss
[920/923] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o
[921/923] Linking Fortran executable src/clubb_loss_driver_test
[922/923] Linking Fortran executable src/clubb_tuner
[922/923] Install the project...
-- Install configuration: "Debug"
-- Installing: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_tuner
-- Set runtime path of "/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_tuner" to "/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/G_unit_tests
-- Set runtime path of "/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/G_unit_tests" to "/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_thread_test
-- Set runtime path of "/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_thread_test" to "/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_standalone
-- Set runtime path of "/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_standalone" to "/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_driver_test" to "/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss
-- Set runtime path of "/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss" to "/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test" to "/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble:/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/lib:/home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/lib64:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types

Build completed successfully, and all source code checks passed.
Performing min-cases run
Using 12 process(es)
Cases to run: arm, atex, bomex, dycoms2_rf01, dycoms2_rf02_ds, rico, wangara, arm_97, gabls3_night, lba, twp_ice, bomex_5day_4scam
COMPLETE -- bomex_5day_4scam
COMPLETE -- bomex
COMPLETE -- wangara
COMPLETE -- dycoms2_rf01
COMPLETE -- atex
COMPLETE -- arm
COMPLETE -- dycoms2_rf02_ds
COMPLETE -- rico
COMPLETE -- gabls3_night
COMPLETE -- lba
COMPLETE -- twp_ice
COMPLETE -- arm_97

=================== Runs Complete ===================
All cases ran to completion.
-- Compiling with double precision
-- SUCCESS: netcdf-fortran found.
--   -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib/libnetcdff.so
--   -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/workspace/clubb_BFB_gfortran_test/build/gcc_DEBUG_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/clubb_BFB_gfortran_test/cmake/toolchains/linux_x86_64_gcc.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_BFB_gfortran_test/build/gcc_DEBUG_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble
about to cmnake /home/jenkins/workspace/clubb_BFB_gfortran_test/build/gcc_DEBUG_PRECdouble
Running CMake configure...
[0/1] Install the project...
-- Install configuration: "Debug"
-- Up-to-date: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/libclubb_driver_lib.a
-- Up-to-date: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_tuner
-- Up-to-date: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/G_unit_tests
-- Up-to-date: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_thread_test
-- Up-to-date: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_standalone
-- Up-to-date: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_driver_test
-- Up-to-date: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_standalone_loss
-- Up-to-date: /home/jenkins/workspace/clubb_BFB_gfortran_test/install/gcc_DEBUG_PRECdouble/clubb_loss_driver_test
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types

Build completed successfully, and all source code checks passed.
Performing min-cases run
Using 12 process(es)
Cases to run: arm, atex, bomex, dycoms2_rf01, dycoms2_rf02_ds, rico, wangara, arm_97, gabls3_night, lba, twp_ice, bomex_5day_4scam
COMPLETE -- bomex_5day_4scam
COMPLETE -- wangara
COMPLETE -- bomex
COMPLETE -- dycoms2_rf01
COMPLETE -- atex
COMPLETE -- arm
COMPLETE -- dycoms2_rf02_ds
COMPLETE -- rico
COMPLETE -- gabls3_night
COMPLETE -- lba
COMPLETE -- twp_ice
COMPLETE -- arm_97

=================== Runs Complete ===================
All cases ran to completion.
Installing uv 0.11.32 in /home/jenkins/workspace/clubb_BFB_gfortran_test/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_BFB_gfortran_test/.clubb-python-tools/bin
  uv
  uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_BFB_gfortran_test/.venv-python
Downloading cpython-3.12.13-linux-x86_64-gnu (download) (32.6MiB)
 Downloaded cpython-3.12.13-linux-x86_64-gnu (download)
Using CPython 3.12.13
Creating virtual environment at: .venv-python
Activate with: source .venv-python/bin/activate
Installing python requirements into /home/jenkins/workspace/clubb_BFB_gfortran_test/.venv-python
Using Python 3.12.13 environment at: .venv-python
Resolved 12 packages in 346ms
Downloading pygments (1.2MiB)
Downloading numpy (15.9MiB)
Downloading cftime (1.6MiB)
Downloading netcdf4 (9.7MiB)
Downloading meson (1.1MiB)
 Downloaded cftime
 Downloaded meson
 Downloaded pygments
 Downloaded netcdf4
 Downloaded numpy
Prepared 12 packages in 759ms
Installed 12 packages in 39ms
 + certifi==2026.7.22
 + cftime==1.6.6
 + iniconfig==2.3.1
 + meson==1.12.1
 + netcdf4==1.7.4
 + ninja==1.13.2
 + numpy==2.5.3
 + packaging==26.3
 + pluggy==1.6.0
 + pygments==2.21.0
 + pytest==9.1.1
 + tabulate==0.10.0
Ready: /home/jenkins/workspace/clubb_BFB_gfortran_test/.venv-python/bin/python
Directory 1 is e92c2f24486a32610935ff4eede3512c67e313ea
Directory 2 is 04ff5df702bc2ad372325353ee19dde5a2fc3fc1
Using reporting threshold:  0.0 


The following cases will be compared: ['arm_97', 'arm', 'atex', 'bomex_5day_4scam', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']


================================================ arm_97 ================================================
>No differences detected by the linux diff in arm_97_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm_97.<<<

=====================================================================================================

================================================ arm ================================================
>No differences detected by the linux diff in arm_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case arm.<<<

=====================================================================================================

================================================ atex ================================================
>No differences detected by the linux diff in atex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case atex.<<<

=====================================================================================================

================================================ bomex_5day_4scam ================================================
>No differences detected by the linux diff in bomex_5day_4scam_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex_5day_4scam.<<<

=====================================================================================================

================================================ bomex ================================================
>No differences detected by the linux diff in bomex_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case bomex.<<<

=====================================================================================================

================================================ dycoms2_rf01 ================================================
>No differences detected by the linux diff in dycoms2_rf01_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf01.<<<

=====================================================================================================

================================================ dycoms2_rf02_ds ================================================
>No differences detected by the linux diff in dycoms2_rf02_ds_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case dycoms2_rf02_ds.<<<

=====================================================================================================

================================================ gabls3_night ================================================
>No differences detected by the linux diff in gabls3_night_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case gabls3_night.<<<

=====================================================================================================

================================================ lba ================================================
>No differences detected by the linux diff in lba_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case lba.<<<

=====================================================================================================

================================================ rico ================================================
>No differences detected by the linux diff in rico_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case rico.<<<

=====================================================================================================

================================================ twp_ice ================================================
>No differences detected by the linux diff in twp_ice_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case twp_ice.<<<

=====================================================================================================

================================================ wangara ================================================
>No differences detected by the linux diff in wangara_stats.nc<
>>>The linux diff could not detect any differences in the file pairs for case wangara.<<<

=====================================================================================================

SUMMARY:
Linux diff did not detect any differences in the compared files.
Pass: 12 cases ['arm_97', 'arm', 'atex', 'bomex_5day_4scam', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']
Fail: 0 cases []

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/workspace/clubb_BFB_gfortran_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_gfortran_test

Using /home/jenkins/workspace/clubb_BFB_gfortran_test with origin https://github.com/larson-group/clubb.git

Output Save Mode: none

Using branch: master

Making list from 'UnresolvedCommits':

CheckRange = True: Getting commit range

Run Output Path: output

Run commands: ['python compile.py -debug', '\nrm -rf output', '\nmkdir output', '\npython run_scripts/run_scm_all.py -min_cases']

Diffing command: run_scripts/run_bindiff_all.py

=============================== Running Test ===============================

Parsing message from commit: 9a1b8b23408d3a5abe78ebae7dd1390755fa4fec
Parsing message from commit: 5f8b57f69c01c59fc3c4457178ae85d57894c1d9
Parsing message from commit: 166ec211468128c37d8bb4b917ffac337bf80247
Parsing message from commit: 341cac040a0d352fd5a4da6a5938a86d7d06e332
Parsing message from commit: e92c2f24486a32610935ff4eede3512c67e313ea

Checking Commit: 9a1b8b23408d3a5abe78ebae7dd1390755fa4fec
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 5f8b57f69c01c59fc3c4457178ae85d57894c1d9
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 166ec211468128c37d8bb4b917ffac337bf80247
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 341cac040a0d352fd5a4da6a5938a86d7d06e332
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: e92c2f24486a32610935ff4eede3512c67e313ea
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out e92c2f24486a32610935ff4eede3512c67e313ea
	Running: 'python compile.py -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'python run_scripts/run_scm_all.py -min_cases'
	Checking out 04ff5df702bc2ad372325353ee19dde5a2fc3fc1
	Running: 'python compile.py -debug'
	Running: 'rm -rf output'
	Running: 'mkdir output'
	Running: 'python run_scripts/run_scm_all.py -min_cases'
	Diffing: 'run_scripts/run_bindiff_all.py e92c2f24486a32610935ff4eede3512c67e313ea 04ff5df702bc2ad372325353ee19dde5a2fc3fc1'

=============================== Test Results ===============================

Commit Range Checked = 04ff5df702bc2ad372325353ee19dde5a2fc3fc1...e92c2f24486a32610935ff4eede3512c67e313ea

No new Unresolved commits found.

No fake BIT_CHANGING commits found.

No remaining Unresolved Commits.

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 

Saving into BaselineCommit: e92c2f24486a32610935ff4eede3512c67e313ea

=============================== Cleanup ===============================

Removing all generated output
	REMOVING: 04ff5df702bc2ad372325353ee19dde5a2fc3fc1
	REMOVING: e92c2f24486a32610935ff4eede3512c67e313ea

================== Unresolved Commit Status ==================

No remaining Unresolved Commits.

Exiting with code: 0
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS