+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl,
netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/clubb_BFB_e3sm_flags_gfortran_test_config
Directory 1 is 50a5528a55591d69e8b704dccebe1e7d6baa2669
Directory 2 is ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f
Using reporting threshold: 0.0
The following cases will be compared: ['arm', 'arm_97', 'atex', 'bomex', 'dycoms2_rf01', 'dycoms2_rf02_ds', 'gabls3_night', 'lba', 'rico', 'twp_ice', 'wangara']
###DIFFING arm netCDF (*.nc) files###
>The linux diff detected differences in arm_zm.nc<
>>No differences detected in the common fields in file arm_zm.nc<<
>The linux diff detected differences in arm_zt.nc<
>>No differences detected in the common fields in file arm_zt.nc<<
>The linux diff detected differences in arm_sfc.nc<
>>No differences detected in the common fields in file arm_sfc.nc<<
>>>Differences in linux diff but no differences in common variables detected for case arm.<<<
**********************************************************************************************************
###DIFFING arm_97 netCDF (*.nc) files###
>The linux diff detected differences in arm_97_zm.nc<
>>No differences detected in the common fields in file arm_97_zm.nc<<
>The linux diff detected differences in arm_97_zt.nc<
>>No differences detected in the common fields in file arm_97_zt.nc<<
>The linux diff detected differences in arm_97_sfc.nc<
>>No differences detected in the common fields in file arm_97_sfc.nc<<
>>>Differences in linux diff but no differences in common variables detected for case arm_97.<<<
**********************************************************************************************************
###DIFFING atex netCDF (*.nc) files###
>The linux diff detected differences in atex_zm.nc<
>>No differences detected in the common fields in file atex_zm.nc<<
>The linux diff detected differences in atex_zt.nc<
>>No differences detected in the common fields in file atex_zt.nc<<
>The linux diff detected differences in atex_sfc.nc<
>>No differences detected in the common fields in file atex_sfc.nc<<
>>>Differences in linux diff but no differences in common variables detected for case atex.<<<
**********************************************************************************************************
###DIFFING bomex netCDF (*.nc) files###
>The linux diff detected differences in bomex_zm.nc<
>>No differences detected in the common fields in file bomex_zm.nc<<
>The linux diff detected differences in bomex_zt.nc<
>>No differences detected in the common fields in file bomex_zt.nc<<
>The linux diff detected differences in bomex_sfc.nc<
>>No differences detected in the common fields in file bomex_sfc.nc<<
>>>Differences in linux diff but no differences in common variables detected for case bomex.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf01 netCDF (*.nc) files###
>The linux diff detected differences in dycoms2_rf01_zm.nc<
>>No differences detected in the common fields in file dycoms2_rf01_zm.nc<<
>The linux diff detected differences in dycoms2_rf01_zt.nc<
>>No differences detected in the common fields in file dycoms2_rf01_zt.nc<<
>The linux diff detected differences in dycoms2_rf01_sfc.nc<
>>No differences detected in the common fields in file dycoms2_rf01_sfc.nc<<
>>>Differences in linux diff but no differences in common variables detected for case dycoms2_rf01.<<<
**********************************************************************************************************
###DIFFING dycoms2_rf02_ds netCDF (*.nc) files###
>The linux diff detected differences in dycoms2_rf02_ds_zm.nc<
>>No differences detected in the common fields in file dycoms2_rf02_ds_zm.nc<<
>The linux diff detected differences in dycoms2_rf02_ds_zt.nc<
>>No differences detected in the common fields in file dycoms2_rf02_ds_zt.nc<<
>The linux diff detected differences in dycoms2_rf02_ds_sfc.nc<
>>No differences detected in the common fields in file dycoms2_rf02_ds_sfc.nc<<
>>>Differences in linux diff but no differences in common variables detected for case dycoms2_rf02_ds.<<<
**********************************************************************************************************
###DIFFING gabls3_night netCDF (*.nc) files###
>The linux diff detected differences in gabls3_night_zm.nc<
>>No differences detected in the common fields in file gabls3_night_zm.nc<<
>The linux diff detected differences in gabls3_night_zt.nc<
>>No differences detected in the common fields in file gabls3_night_zt.nc<<
>The linux diff detected differences in gabls3_night_sfc.nc<
>>No differences detected in the common fields in file gabls3_night_sfc.nc<<
>>>Differences in linux diff but no differences in common variables detected for case gabls3_night.<<<
**********************************************************************************************************
###DIFFING lba netCDF (*.nc) files###
>The linux diff detected differences in lba_zm.nc<
>>No differences detected in the common fields in file lba_zm.nc<<
>The linux diff detected differences in lba_zt.nc<
>>No differences detected in the common fields in file lba_zt.nc<<
>The linux diff detected differences in lba_sfc.nc<
>>No differences detected in the common fields in file lba_sfc.nc<<
>>>Differences in linux diff but no differences in common variables detected for case lba.<<<
**********************************************************************************************************
###DIFFING rico netCDF (*.nc) files###
>The linux diff detected differences in rico_zm.nc<
>>No differences detected in the common fields in file rico_zm.nc<<
>The linux diff detected differences in rico_zt.nc<
>>No differences detected in the common fields in file rico_zt.nc<<
>The linux diff detected differences in rico_sfc.nc<
>>No differences detected in the common fields in file rico_sfc.nc<<
>>>Differences in linux diff but no differences in common variables detected for case rico.<<<
**********************************************************************************************************
###DIFFING twp_ice netCDF (*.nc) files###
>The linux diff detected differences in twp_ice_zm.nc<
>>No differences detected in the common fields in file twp_ice_zm.nc<<
>The linux diff detected differences in twp_ice_zt.nc<
>>No differences detected in the common fields in file twp_ice_zt.nc<<
>The linux diff detected differences in twp_ice_sfc.nc<
>>No differences detected in the common fields in file twp_ice_sfc.nc<<
>>>Differences in linux diff but no differences in common variables detected for case twp_ice.<<<
**********************************************************************************************************
###DIFFING wangara netCDF (*.nc) files###
>The linux diff detected differences in wangara_zm.nc<
>>No differences detected in the common fields in file wangara_zm.nc<<
>The linux diff detected differences in wangara_zt.nc<
>>No differences detected in the common fields in file wangara_zt.nc<<
>The linux diff detected differences in wangara_sfc.nc<
>>No differences detected in the common fields in file wangara_sfc.nc<<
>>>Differences in linux diff but no differences in common variables detected for case wangara.<<<
**********************************************************************************************************
SUMMARY:
Differences detected by linux diff but no differences in the common variables of the netCDF files compared.
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/workspace/clubb_BFB_e3sm_flags_gfortran_test
Checking specified repo: /home/jenkins/workspace/clubb_BFB_e3sm_flags_gfortran_test
Using /home/jenkins/workspace/clubb_BFB_e3sm_flags_gfortran_test with origin https://github.com/larson-group/clubb.git
Output Save Mode: none
Using branch: master
Making list from 'UnresolvedCommits':
CheckRange = True: Getting commit range
Run Output Path: output
Run commands: ['python compile.py -debug', '\nrm -rf output', '\nmkdir output', '\nmv input/tunable_parameters_e3sm/configurable_model_flags.in input/tunable_parameters', '\npython run_scripts/run_scm_all.py -min_cases']
Diffing command: run_scripts/run_bindiff_all.py
=============================== Running Test ===============================
Parsing message from commit: 665f3896481654acdb49de9afae25d7a9b24a81c
Parsing message from commit: f3de007e9528afc6cc2d71090bce5c6c53337152
Parsing message from commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669
Checking Commit: 665f3896481654acdb49de9afae25d7a9b24a81c
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: f3de007e9528afc6cc2d71090bce5c6c53337152
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 50a5528a55591d69e8b704dccebe1e7d6baa2669
Running: final commit to check, not labelled BIT_CHANGING
Checking out 50a5528a55591d69e8b704dccebe1e7d6baa2669
Running: 'python compile.py -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'mv input/tunable_parameters_e3sm/configurable_model_flags.in input/tunable_parameters'
Running: 'python run_scripts/run_scm_all.py -min_cases'
Checking out ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f
Running: 'python compile.py -debug'
Running: 'rm -rf output'
Running: 'mkdir output'
Running: 'mv input/tunable_parameters_e3sm/configurable_model_flags.in input/tunable_parameters'
Running: 'python run_scripts/run_scm_all.py -min_cases'
Diffing: 'run_scripts/run_bindiff_all.py 50a5528a55591d69e8b704dccebe1e7d6baa2669 ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f'
=============================== Test Results ===============================
Commit Range Checked = ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f...50a5528a55591d69e8b704dccebe1e7d6baa2669
No new Unresolved commits found.
No fake BIT_CHANGING commits found.
No remaining Unresolved Commits.
=============================== Updating Config File ===============================
Saving into UnresolvedCommits:
Saving into BaselineCommit: 50a5528a55591d69e8b704dccebe1e7d6baa2669
=============================== Cleanup ===============================
Removing all generated output
REMOVING: ea0b892fd2c25049cb5d1429994dc80e4ab6ed9f
REMOVING: 50a5528a55591d69e8b704dccebe1e7d6baa2669
================== Unresolved Commit Status ==================
No remaining Unresolved Commits.
Exiting with code: 0
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