+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z
++ LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z
++ source /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ run_scripts/run_scam.bash atex
----- Case Setup -----
Compset longname is 2000_CAM60%SCAM_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam6 physics:
LND component is clm5.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes specification file is /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 1997-06-18
Compset specific settings: name is START_TOD and value is 84585
Compset specific settings: name is PTS_MODE and value is TRUE
Compset specific settings: name is PTS_LAT and value is 36.6
Compset specific settings: name is PTS_LON and value is 262.5
Machine is larson-group
Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7
Pes setting: compset is 2000_CAM60%SCAM_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP
Pes setting: tasks is {'NTASKS_ATM': -1, 'NTASKS_LND': -1, 'NTASKS_ROF': -1, 'NTASKS_ICE': -1, 'NTASKS_OCN': -1, 'NTASKS_GLC': -1, 'NTASKS_WAV': -1, 'NTASKS_CPL': -1}
Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1}
Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0}
Pes setting: pstrid is {}
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
Compset is: 2000_CAM60%SCAM_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP
Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7
Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp']
This is a CESM scientifically supported compset at this resolution.
No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-21-gf10cbbaf
Batch_system_type is none
Creating Case directory /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/scripts/test_scam_atex
This component includes user_mods /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime_config/usermods_dirs/scam_mandatory
Adding user mods directory /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime_config/usermods_dirs/scam_mandatory
RUN: /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/scripts/test_scam_atex/shell_commands
FROM: /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/scripts/test_scam_atex
Adding user mods directory /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime_config/usermods_dirs/scam_atex
RUN: /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/scripts/test_scam_atex/shell_commands
FROM: /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/scripts/test_scam_atex
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/cam_scam_gfortran_debug_test/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/cam_scam_gfortran_debug_test/ccs_config/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Run configuration -----
----- Compile -----
Building case in directory /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/scripts/test_scam_atex
sharedlib_only is False
model_only is False
Generating component namelists as part of build
2024-07-17 03:39:06 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime_config/buildnml
...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/scripts/test_scam_atex/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_atex/run/atm_in
2024-07-17 03:39:06 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
2024-07-17 03:39:07 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/components/cice//cime_config/buildnml
2024-07-17 03:39:07 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/components/cdeps/docn/cime_config/buildnml
File not found: model_meshfile = /home/pub/cam_inputdata/share/meshes/T42_ESMFmesh_c20200629.nc, will attempt to download in check_input_data phase
File not found: model_maskfile = /home/pub/cam_inputdata/share/meshes/gx1v7_151008_ESMFmesh.nc, will attempt to download in check_input_data phase
docn_mode is prescribed
2024-07-17 03:39:07 rof
Create namelist for component srof
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
2024-07-17 03:39:07 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2024-07-17 03:39:07 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2024-07-17 03:39:07 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2024-07-17 03:39:07 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/components/cmeps/cime_config/buildnml
File not found: mesh_atm = /home/pub/cam_inputdata/share/meshes/T42_ESMFmesh_c20200629.nc, will attempt to download in check_input_data phase
File not found: mesh_ice = /home/pub/cam_inputdata/share/meshes/T42_ESMFmesh_c20200629.nc, will attempt to download in check_input_data phase
File not found: mesh_lnd = /home/pub/cam_inputdata/share/meshes/T42_ESMFmesh_c20200629.nc, will attempt to download in check_input_data phase
File not found: mesh_ocn = /home/pub/cam_inputdata/share/meshes/T42_ESMFmesh_c20200629.nc, will attempt to download in check_input_data phase
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/gptl.bldlog.240717-033906
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/build_scripts/buildlib.gptl
Component gptl build complete with 21 warnings
Building mct with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/mct.bldlog.240717-033906
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/build_scripts/buildlib.mct
Component mct build complete with 4355 warnings
Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/pio.bldlog.240717-033906
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/csm_share.bldlog.240717-033906
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/share/buildlib.csm_share
Component csm_share build complete with 268 warnings
Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/CDEPS.bldlog.240717-033906
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/components/cdeps/cime_config/buildlib
Component CDEPS build complete with 200 warnings
- Building clm library
Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_atex/bld/lnd.bldlog.240717-033906
Component lnd build complete with 2528 warnings
clm built in 69.315856 seconds
- Building atm Library
Building atm with output to /home/jenkins/cam_output/scratch/test_scam_atex/bld/atm.bldlog.240717-033906
- Building ice Library
Building ice with output to /home/jenkins/cam_output/scratch/test_scam_atex/bld/ice.bldlog.240717-033906
- Building ocn Library
Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_atex/bld/ocn.bldlog.240717-033906
docn built in 0.583693 seconds
Component ice build complete with 385 warnings
cice built in 92.081742 seconds
Component atm build complete with 5780 warnings
cam built in 150.834192 seconds
Building cesm from /home/jenkins/workspace/cam_scam_gfortran_debug_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_atex/bld/cesm.bldlog.240717-033906
Component cesm exe build complete with 50 warnings
Total build time: 348.094192 seconds
MODEL BUILD HAS FINISHED SUCCESSFULLY
----- Run Submission -----
2024-07-17 03:44:54 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/scripts/test_scam_atex/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_atex/run/atm_in
2024-07-17 03:44:55 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
2024-07-17 03:44:55 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/components/cice//cime_config/buildnml
2024-07-17 03:44:55 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/components/cdeps/docn/cime_config/buildnml
File not found: model_meshfile = /home/pub/cam_inputdata/share/meshes/T42_ESMFmesh_c20200629.nc, will attempt to download in check_input_data phase
File not found: model_maskfile = /home/pub/cam_inputdata/share/meshes/gx1v7_151008_ESMFmesh.nc, will attempt to download in check_input_data phase
docn_mode is prescribed
2024-07-17 03:44:55 rof
Create namelist for component srof
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
2024-07-17 03:44:55 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2024-07-17 03:44:55 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2024-07-17 03:44:55 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2024-07-17 03:44:55 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_scam_gfortran_debug_test/components/cmeps/cime_config/buildnml
File not found: mesh_atm = /home/pub/cam_inputdata/share/meshes/T42_ESMFmesh_c20200629.nc, will attempt to download in check_input_data phase
File not found: mesh_ice = /home/pub/cam_inputdata/share/meshes/T42_ESMFmesh_c20200629.nc, will attempt to download in check_input_data phase
File not found: mesh_lnd = /home/pub/cam_inputdata/share/meshes/T42_ESMFmesh_c20200629.nc, will attempt to download in check_input_data phase
File not found: mesh_ocn = /home/pub/cam_inputdata/share/meshes/T42_ESMFmesh_c20200629.nc, will attempt to download in check_input_data phase
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Checking that inputdata is available as part of case submission
Loading input file list: 'Buildconf/ctsm.input_data_list'
Model ctsm missing file stream_fldfilename_urbantv = '/home/pub/cam_inputdata/lnd/clm2/urbandata/CLM50_tbuildmax_Oleson_2016_0.9x1.25_simyr1849-2106_c160923.nc'
Model ctsm missing file stream_meshfile_urbantv = '/home/pub/cam_inputdata/lnd/clm2/urbandata/CLM50_tbuildmax_Oleson_2016_0.9x1_ESMFmesh_cdf5_100621.nc'
Model ctsm missing file fsurdat = '/home/pub/cam_inputdata/lnd/clm2/surfdata_map/release-clm5.0.18/surfdata_64x128_hist_16pfts_Irrig_CMIP6_simyr2000_c190214.nc'
Model ctsm missing file fsnowoptics = '/home/pub/cam_inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c013122.nc'
Model ctsm missing file paramfile = '/home/pub/cam_inputdata/lnd/clm2/paramdata/clm50_params.c211112.nc'
Model ctsm missing file fsnowaging = '/home/pub/cam_inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60_c070416.nc'
Loading input file list: 'Buildconf/docn.input_data_list'
Model docn missing file model_meshfile = '/home/pub/cam_inputdata/share/meshes/T42_ESMFmesh_c20200629.nc'
Model docn missing file model_maskfile = '/home/pub/cam_inputdata/share/meshes/gx1v7_151008_ESMFmesh.nc'
Model docn missing file mesh = '/home/pub/cam_inputdata/atm/cam/sst/sst_HadOIBl_bc_1x1_clim_c101029_ESMFmesh_120520.nc'
Model docn missing file file1 = '/home/pub/cam_inputdata/atm/cam/sst/sst_HadOIBl_bc_1x1_2000climo_c180511.nc'
Loading input file list: 'Buildconf/cam.input_data_list'
Model cam missing file solar_irrad_data_file = '/home/pub/cam_inputdata/atm/cam/solar/SolarForcing1995-2005avg_c160929.nc'
Model cam missing file soil_erod_file = '/home/pub/cam_inputdata/atm/cam/dst/dst_source2x2tunedcam6-2x2-04062017.nc'
Model cam missing file water_refindex_file = '/home/pub/cam_inputdata/atm/cam/physprops/water_refindex_rrtmg_c080910.nc'
Model cam missing file stream_ndep_mesh_filename = '/home/pub/cam_inputdata/share/meshes/fv0.9x1.25_141008_polemod_ESMFmesh.nc'
Model cam missing file stream_ndep_data_filename = '/home/pub/cam_inputdata/lnd/clm2/ndepdata/fndep_clm_hist_b.e21.BWHIST.f09_g17.CMIP6-historical-WACCM.ensmean_1849-2015_monthly_0.9x1.25_c180926.nc'
Model cam missing file tropopause_climo_file = '/home/pub/cam_inputdata/atm/cam/chem/trop_mozart/ub/clim_p_trop.nc'
Model cam missing file rsf_file = '/home/pub/cam_inputdata/atm/waccm/phot/RSF_GT200nm_v3.0_c080811.nc'
Model cam missing file tracer_cnst_file = '/home/pub/cam_inputdata/atm/cam/ozone/tracer_cnst_CAM6chem_2000climo_3D_monthly_c171004.nc'
Model cam missing file xs_long_file = '/home/pub/cam_inputdata/atm/waccm/phot/temp_prs_GT200nm_c221005mm.nc'
Model cam missing file depvel_lnd_file = '/home/pub/cam_inputdata/atm/cam/chem/trop_mozart/dvel/regrid_vegetation.nc'
Model cam missing file exo_coldens_file = '/home/pub/cam_inputdata/atm/cam/chem/trop_mozart/phot/exo_coldens.nc'
Model cam missing file prescribed_strataero_file = '/home/pub/cam_inputdata/atm/cam/ozone/ozone_strataero_CAM6chem_2000climo_zm_5day_c171004.nc'
Model cam missing file iceopticsfile = '/home/pub/cam_inputdata/atm/cam/physprops/iceoptics_c080917.nc'
Model cam missing file liqopticsfile = '/home/pub/cam_inputdata/atm/cam/physprops/F_nwvl200_mu20_lam50_res64_t298_c080428.nc'
Model cam missing file dep_data_file = '/home/pub/cam_inputdata/atm/cam/chem/trop_mozart/dvel/dep_data_c20221208.nc'
Model cam missing file flbc_file = '/home/pub/cam_inputdata/atm/waccm/lb/LBC_2000climo_CMIP6_0p5degLat_c180227.nc'
Model cam missing file bnd_topo = '/home/pub/cam_inputdata/atm/cam/topo/T42_nc3000_Co060_Fi001_PF_nullRR_Nsw042_20180111.nc'
Model cam missing file ncdata = '/home/pub/cam_inputdata/atm/cam/inic/gaus/cami_0000-01-01_64x128_L32_c170510.nc'
Model cam missing file prescribed_ozone_file = '/home/pub/cam_inputdata/atm/cam/ozone/ozone_strataero_CAM6chem_2000climo_zm_5day_c171004.nc'
Model cam missing file iopfile = '/home/pub/cam_inputdata/atm/cam/scam/iop/ATEX_48hr_4scam.nc'
Model cam missing file ext_frc_specifier for H2O = '/home/pub/cam_inputdata/atm/cam/chem/emis/elev/H2O_emission_CH4_oxidationx2_elev_3Dmonthly_L70_2000climo_c180511.nc'
Model cam missing file ext_frc_specifier for num_a1 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_num_so4_a1_anthro-ene_vertical_2000climo_0.9x1.25_c20170616.nc'
Model cam missing file ext_frc_specifier for num_a1 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_num_a1_so4_contvolcano_vertical_2000climo_0.9x1.25_c20170724.nc'
Model cam missing file ext_frc_specifier for num_a2 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_num_a2_so4_contvolcano_vertical_2000climo_0.9x1.25_c20170724.nc'
Model cam missing file ext_frc_specifier for SO2 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_SO2_contvolcano_vertical_2000climo_0.9x1.25_c20170322.nc'
Model cam missing file ext_frc_specifier for so4_a1 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_so4_a1_anthro-ene_vertical_2000climo_0.9x1.25_c20170616.nc'
Model cam missing file ext_frc_specifier for so4_a1 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_so4_a1_contvolcano_vertical_2000climo_0.9x1.25_c20170724.nc'
Model cam missing file ext_frc_specifier for so4_a2 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_so4_a2_contvolcano_vertical_2000climo_0.9x1.25_c20170724.nc'
Model cam missing file rad_climate for mam4_mode1 = '/home/pub/cam_inputdata/atm/cam/physprops/mam4_mode1_rrtmg_aeronetdust_sig1.6_dgnh.48_c140304.nc'
Model cam missing file rad_climate for mam4_mode2 = '/home/pub/cam_inputdata/atm/cam/physprops/mam4_mode2_rrtmg_aitkendust_c141106.nc'
Model cam missing file rad_climate for mam4_mode3 = '/home/pub/cam_inputdata/atm/cam/physprops/mam4_mode3_rrtmg_aeronetdust_sig1.2_dgnl.40_c150219.nc'
Model cam missing file rad_climate for mam4_mode4 = '/home/pub/cam_inputdata/atm/cam/physprops/mam4_mode4_rrtmg_c130628.nc'
Model cam missing file rad_climate for VOLC_MMR1 = '/home/pub/cam_inputdata/atm/cam/physprops/volc_camRRTMG_byradius_sigma1.6_mode1_c210211.nc'
Model cam missing file rad_climate for VOLC_MMR2 = '/home/pub/cam_inputdata/atm/cam/physprops/volc_camRRTMG_byradius_sigma1.6_mode2_c210211.nc'
Model cam missing file rad_climate for VOLC_MMR3 = '/home/pub/cam_inputdata/atm/cam/physprops/volc_camRRTMG_byradius_sigma1.2_mode3_c210211.nc'
Model cam missing file srf_emis_specifier for bc_a4 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_bc_a4_anthro_surface_2000climo_0.9x1.25_c20170608.nc'
Model cam missing file srf_emis_specifier for bc_a4 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_bc_a4_bb_surface_2000climo_0.9x1.25_c20170322.nc'
Model cam missing file srf_emis_specifier for DMS = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_DMS_bb_surface_2000climo_0.9x1.25_c20170322.nc'
Model cam missing file srf_emis_specifier for num_a1 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_num_so4_a1_bb_surface_2000climo_0.9x1.25_c20170322.nc'
Model cam missing file srf_emis_specifier for num_a1 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_num_so4_a1_anthro-ag-ship_surface_2000climo_0.9x1.25_c20170616.nc'
Model cam missing file srf_emis_specifier for num_a2 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_num_so4_a2_anthro-res_surface_2000climo_0.9x1.25_c20170616.nc'
Model cam missing file srf_emis_specifier for num_a4 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_num_bc_a4_bb_surface_2000climo_0.9x1.25_c20170322.nc'
Model cam missing file srf_emis_specifier for num_a4 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_num_bc_a4_anthro_surface_2000climo_0.9x1.25_c20170608.nc'
Model cam missing file srf_emis_specifier for num_a4 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_num_pom_a4_anthro_surface_2000climo_0.9x1.25_c20170608.nc'
Model cam missing file srf_emis_specifier for num_a4 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_num_pom_a4_bb_surface_2000climo_0.9x1.25_c20170509.nc'
Model cam missing file srf_emis_specifier for pom_a4 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_pom_a4_anthro_surface_2000climo_0.9x1.25_c20170608.nc'
Model cam missing file srf_emis_specifier for pom_a4 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_pom_a4_bb_surface_2000climo_0.9x1.25_c20170322.nc'
Model cam missing file srf_emis_specifier for SO2 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_SO2_anthro-ag-ship-res_surface_2000climo_0.9x1.25_c20170616.nc'
Model cam missing file srf_emis_specifier for SO2 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_SO2_anthro-ene_surface_2000climo_0.9x1.25_c20170616.nc'
Model cam missing file srf_emis_specifier for SO2 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_SO2_bb_surface_2000climo_0.9x1.25_c20170322.nc'
Model cam missing file srf_emis_specifier for so4_a1 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_so4_a1_anthro-ag-ship_surface_2000climo_0.9x1.25_c20170616.nc'
Model cam missing file srf_emis_specifier for so4_a1 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_so4_a1_bb_surface_2000climo_0.9x1.25_c20170322.nc'
Model cam missing file srf_emis_specifier for so4_a2 = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_so4_a2_anthro-res_surface_2000climo_0.9x1.25_c20170616.nc'
Model cam missing file srf_emis_specifier for SOAE = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_BENZENE_anthro_surface_2000climo_0.9x1.25_c20170608.nc'
Model cam missing file srf_emis_specifier for SOAE = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_BENZENE_bb_surface_2000climo_0.9x1.25_c20170322.nc'
Model cam missing file srf_emis_specifier for SOAE = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_ISOP_bb_surface_2000climo_0.9x1.25_c20170322.nc'
Model cam missing file srf_emis_specifier for SOAE = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_MTERP_bb_surface_2000climo_0.9x1.25_c20170322.nc'
Model cam missing file srf_emis_specifier for SOAE = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_TOLUENE_anthro_surface_2000climo_0.9x1.25_c20170608.nc'
Model cam missing file srf_emis_specifier for SOAE = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_TOLUENE_bb_surface_2000climo_0.9x1.25_c20170322.nc'
Model cam missing file srf_emis_specifier for SOAE = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_XYLENES_anthro_surface_2000climo_0.9x1.25_c20170608.nc'
Model cam missing file srf_emis_specifier for SOAE = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_XYLENES_bb_surface_2000climo_0.9x1.25_c20170322.nc'
Model cam missing file srf_emis_specifier for SOAE = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_IVOC_anthro_surface_2000climo_0.9x1.25_c20170608.nc'
Model cam missing file srf_emis_specifier for SOAE = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_IVOC_bb_surface_2000climo_0.9x1.25_c20170322.nc'
Model cam missing file srf_emis_specifier for SOAE = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_SVOC_anthro_surface_2000climo_0.9x1.25_c20170608.nc'
Model cam missing file srf_emis_specifier for SOAE = '/home/pub/cam_inputdata/atm/cam/chem/emis/CMIP6_emissions_2000climo/emissions-cmip6_SVOC_bb_surface_2000climo_0.9x1.25_c20170322.nc'
Model cam missing file mode_defs for so4_a1 = '/home/pub/cam_inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc'
Model cam missing file mode_defs for pom_a1 = '/home/pub/cam_inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc'
Model cam missing file mode_defs for soa_a1 = '/home/pub/cam_inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc'
Model cam missing file mode_defs for bc_a1 = '/home/pub/cam_inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc'
Model cam missing file mode_defs for dst_a1 = '/home/pub/cam_inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc'
Model cam missing file mode_defs for ncl_a1 = '/home/pub/cam_inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc'
Model cam missing file mode_defs for so4_a2 = '/home/pub/cam_inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc'
Model cam missing file mode_defs for soa_a2 = '/home/pub/cam_inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc'
Model cam missing file mode_defs for ncl_a2 = '/home/pub/cam_inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc'
Model cam missing file mode_defs for dst_a2 = '/home/pub/cam_inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc'
Model cam missing file mode_defs for dst_a3 = '/home/pub/cam_inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc'
Model cam missing file mode_defs for ncl_a3 = '/home/pub/cam_inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc'
Model cam missing file mode_defs for so4_a3 = '/home/pub/cam_inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc'
Model cam missing file mode_defs for pom_a4 = '/home/pub/cam_inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc'
Model cam missing file mode_defs for bc_a4 = '/home/pub/cam_inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc'
Loading input file list: 'Buildconf/cpl.input_data_list'
Model cpl missing file mesh_atm = '/home/pub/cam_inputdata/share/meshes/T42_ESMFmesh_c20200629.nc'
Model cpl missing file mesh_ice = '/home/pub/cam_inputdata/share/meshes/T42_ESMFmesh_c20200629.nc'
Model cpl missing file mesh_lnd = '/home/pub/cam_inputdata/share/meshes/T42_ESMFmesh_c20200629.nc'
Model cpl missing file mesh_ocn = '/home/pub/cam_inputdata/share/meshes/T42_ESMFmesh_c20200629.nc'
Loading input file list: 'Buildconf/cice.input_data_list'
Checking server ftp://gridanon.cgd.ucar.edu:2811/cesm/inputdata/ with protocol gftp
Client protocol gftp not enabled
Checking server ftp://ftp.cgd.ucar.edu/cesm/inputdata/ with protocol wget
Using protocol wget with user anonymous and passwd user@example.edu
Loading input file list: 'Buildconf/ctsm.input_data_list'
Model ctsm missing file stream_fldfilename_urbantv = '/home/pub/cam_inputdata/lnd/clm2/urbandata/CLM50_tbuildmax_Oleson_2016_0.9x1.25_simyr1849-2106_c160923.nc'
Trying to download file: 'lnd/clm2/urbandata/CLM50_tbuildmax_Oleson_2016_0.9x1.25_simyr1849-2106_c160923.nc' to path '/home/pub/cam_inputdata/lnd/clm2/urbandata/CLM50_tbuildmax_Oleson_2016_0.9x1.25_simyr1849-2106_c160923.nc' using WGET protocol.
Traceback (most recent call last):
File "/home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/scripts/test_scam_atex/./case.submit", line 196, in <module>
_main_func(__doc__)
File "/home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/scripts/test_scam_atex/./case.submit", line 179, in _main_func
case.submit(
File "/home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/case/case_submit.py", line 272, in submit
run_and_log_case_status(
File "/home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/utils.py", line 2480, in run_and_log_case_status
rv = func()
File "/home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/case/case_submit.py", line 256, in <lambda>
functor = lambda: _submit(
File "/home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/case/case_submit.py", line 163, in _submit
case.check_case(skip_pnl=skip_pnl, chksum=chksum)
File "/home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/case/case_submit.py", line 295, in check_case
self.check_all_input_data(chksum=chksum)
File "/home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/case/check_input_data.py", line 244, in check_all_input_data
return _check_all_input_data_impl(
File "/home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/case/check_input_data.py", line 217, in _check_all_input_data_impl
success = _downloadfromserver(self, input_data_root, data_list_dir)
File "/home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/case/check_input_data.py", line 264, in _downloadfromserver
success = case.check_input_data(
File "/home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/case/check_input_data.py", line 607, in check_input_data
return _check_input_data_impl(
File "/home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/case/check_input_data.py", line 543, in _check_input_data_impl
success = _download_if_in_repo(
File "/home/jenkins/workspace/cam_scam_gfortran_debug_test/cime/CIME/case/check_input_data.py", line 152, in _download_if_in_repo
os.makedirs(os.path.dirname(full_path))
File "/usr/lib/python3.10/os.py", line 215, in makedirs
makedirs(head, exist_ok=exist_ok)
File "/usr/lib/python3.10/os.py", line 215, in makedirs
makedirs(head, exist_ok=exist_ok)
File "/usr/lib/python3.10/os.py", line 225, in makedirs
mkdir(name, mode)
PermissionError: [Errno 13] Permission denied: '/home/pub/cam_inputdata/lnd'
Success!
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