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Console Output

Started by an SCM change
Obtained jenkins_tests/cam_scam_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git
[Pipeline] Start of Pipeline
[Pipeline] node
Still waiting to schedule task
Waiting for next available executor
Running on Jenkins in /home/jenkins/workspace/cam_scam_gfortran_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/cam.git
 > git init /home/jenkins/workspace/cam_scam_gfortran_test # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
 > git --version # timeout=10
 > git --version # 'git version 2.30.2'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
Checking out Revision 9be0cef04a0a87e891e8274b1cefd661c25b0d0b (refs/remotes/origin/clubb_silhs_devel)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 9be0cef04a0a87e891e8274b1cefd661c25b0d0b # timeout=10
Commit message: "Autoupdated CLUBB_core Commit 79d08b6b6da219ed06ea1ada4d4d16bf6b6d7ae4 Author: Gunther Huebler Date: Mon Jan 8 22:23:31 2024 -0600 Adding new argument list variables to openacc copyin statements"
 > git rev-list --no-walk 34627192a2d2987aedd56508bc665daadb746405 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Checkout Externals and Copy Custom Files)
[Pipeline] sh
+ python run_scripts/set_up_cam_coarse_res.py .
ERROR:root:Command '['svn', 'checkout', '--quiet', 'https://github.com/CFMIP/COSPv2.0/tags/v2.1.4cesm/src', '/home/jenkins/workspace/cam_scam_gfortran_test/src/physics/cosp2/src']' returned non-zero exit status 1.
ERROR:root:Failed with output:
    svn: E170013: Unable to connect to a repository at URL 'https://github.com/CFMIP/COSPv2.0/tags/v2.1.4cesm/src'
    svn: E900002: Subversion support temporarily disabled.
    
    GitHub has temporarily disabled Subversion support as part of a planned brownout
    in order to give you advance notice of the upcoming permanent removal of
    Subversion support on 2024-01-08.
    
    Please see https://github.blog/2023-01-20-sunsetting-subversion-support/ for details.

ERROR: In directory
    /home/jenkins/workspace/cam_scam_gfortran_test/src/physics/carma/base
Process did not run successfully; returned status 1:
    svn checkout --quiet https://github.com/CFMIP/COSPv2.0/tags/v2.1.4cesm/src /home/jenkins/workspace/cam_scam_gfortran_test/src/physics/cosp2/src
See above for output from failed command.

ERROR:root:Failed with output:
    svn: E170013: Unable to connect to a repository at URL 'https://github.com/CFMIP/COSPv2.0/tags/v2.1.4cesm/src'
    svn: E900002: Subversion support temporarily disabled.
    
    GitHub has temporarily disabled Subversion support as part of a planned brownout
    in order to give you advance notice of the upcoming permanent removal of
    Subversion support on 2024-01-08.
    
    Please see https://github.blog/2023-01-20-sunsetting-subversion-support/ for details.

ERROR: In directory
    /home/jenkins/workspace/cam_scam_gfortran_test/src/physics/carma/base
Process did not run successfully; returned status 1:
    svn checkout --quiet https://github.com/CFMIP/COSPv2.0/tags/v2.1.4cesm/src /home/jenkins/workspace/cam_scam_gfortran_test/src/physics/cosp2/src
See above for output from failed command.

Checking out externals...
Copying cime config files
Traceback (most recent call last):
  File "/home/jenkins/workspace/cam_scam_gfortran_test/run_scripts/set_up_cam_coarse_res.py", line 80, in <module>
    shutil.copy(custom_machine_file, machine_file_dir)
  File "/usr/lib/python3.9/shutil.py", line 418, in copy
    copyfile(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/lib/python3.9/shutil.py", line 264, in copyfile
    with open(src, 'rb') as fsrc, open(dst, 'wb') as fdst:
FileNotFoundError: [Errno 2] No such file or directory: 'ccs_config/machines'
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Remove Old Output)
Stage "Remove Old Output" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run atex)
Stage "Run atex" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run arm97 with SILHS)
Stage "Run arm97 with SILHS" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] cleanWs
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output/
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_atex/bld/atm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_atex/bld/atm.bldlog.*.gz: No such file or directory
[Pipeline] echo
Not all logs were made for atex.
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/test_scam_arm97/bld/atm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/test_scam_arm97/bld/atm.bldlog.*.gz: No such file or directory
[Pipeline] echo
Not all logs were made for arm97.
[Pipeline] }
[Pipeline] // script
[Pipeline] script
[Pipeline] {
[Pipeline] emailext
Sending email to: messnermet@uwm.edu
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE