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Started by an SCM change Obtained jenkins_tests/cam_plot_scam_ifort/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on nelson in /home/jenkins/workspace/cam_plot_scam_ifort [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_plot_scam_ifort # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 7a187761ac14a1987d6855c084c7987d2bc23a16 (refs/remotes/origin/clubb_silhs_devel) Commit message: "Autoupdated SILHS Commit bb0b6c6de3c0b80ef8599dc9ea18219146ddb20c Author: Gunther Huebler Date: Mon Nov 18 20:21:43 2024 -0600 Clubb Driver Semi GPUization Part4 (#1209) * Initial GPUization, and testing multi_col output method as single precision." > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 7a187761ac14a1987d6855c084c7987d2bc23a16 # timeout=10 > git rev-list --no-walk 86df31ff4b0640c119437d4690e9556fa4ff36e5 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Externals and Copy Custom Files) [Pipeline] sh + python run_scripts/set_up_repo.py . Checking out externals... Copying ccs_config files [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Sed Commands) [Pipeline] sh + sed -i 's/COMPILER=.*/COMPILER="intel"/g' run_scripts/run_scam.bash [Pipeline] sh + sed -i 's/DEBUG="TRUE"/DEBUG="FALSE"/g' run_scripts/run_scam.bash [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX /home/jenkins/cam_output/scratch/test_scam_ARM97 [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run ATEX) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + run_scripts/run_scam.bash ATEX ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_plot_scam_ifort/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_plot_scam_ifort/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-705-g7a187761 Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_plot_scam_ifort/cime/scripts/test_scam_ATEX This component includes user_mods /home/jenkins/workspace/cam_plot_scam_ifort/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_plot_scam_ifort/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_plot_scam_ifort/cime/scripts/test_scam_ATEX/shell_commands FROM: /home/jenkins/workspace/cam_plot_scam_ifort/cime/scripts/test_scam_ATEX Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_plot_scam_ifort/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_plot_scam_ifort/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_plot_scam_ifort/cime/scripts/test_scam_ATEX sharedlib_only is False model_only is False Generating component namelists as part of build 2024-11-19 03:50:00 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_plot_scam_ifort/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_plot_scam_ifort/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2024-11-19 03:50:00 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_plot_scam_ifort/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2024-11-19 03:50:00 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_plot_scam_ifort/components/cice//cime_config/buildnml 2024-11-19 03:50:00 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_plot_scam_ifort/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2024-11-19 03:50:00 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_plot_scam_ifort/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2024-11-19 03:50:00 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_plot_scam_ifort/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2024-11-19 03:50:00 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_plot_scam_ifort/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2024-11-19 03:50:00 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_plot_scam_ifort/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2024-11-19 03:50:00 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_plot_scam_ifort/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.241119-035000 Calling /home/jenkins/workspace/cam_plot_scam_ifort/cime/CIME/build_scripts/buildlib.gptl Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.241119-035000 Calling /home/jenkins/workspace/cam_plot_scam_ifort/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.241119-035000 Calling /home/jenkins/workspace/cam_plot_scam_ifort/share/buildlib.csm_share Component csm_share build complete with 12 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.241119-035000 Calling /home/jenkins/workspace/cam_plot_scam_ifort/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.241119-035000 Component lnd build complete with 19 warnings clm built in 100.491851 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.241119-035000 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.241119-035000 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.241119-035000 docn built in 0.686636 seconds /home/jenkins/workspace/cam_plot_scam_ifort/src/physics/cam/clubb_intr.F90(3544): error #6633: The type of the actual argument differs from the type of the dummy argument. [RCM_OUT_ZM] /home/jenkins/workspace/cam_plot_scam_ifort/src/physics/cam/clubb_intr.F90(3544): error #6633: The type of the actual argument differs from the type of the dummy argument. [THLPRCP_OUT] /home/jenkins/workspace/cam_plot_scam_ifort/src/physics/cam/clubb_intr.F90(3544): error #6631: A non-optional actual argument must be present when invoking a procedure with an explicit interface. [CLUBB_PARAMS] /home/jenkins/workspace/cam_plot_scam_ifort/src/physics/cam/clubb_intr.F90(3544): error #6631: A non-optional actual argument must be present when invoking a procedure with an explicit interface. [THLP2_FORCING] /home/jenkins/workspace/cam_plot_scam_ifort/src/physics/cam/clubb_intr.F90(3544): error #6634: The shape matching rules of actual arguments and dummy arguments have been violated. [RCM_OUT_ZM] /home/jenkins/workspace/cam_plot_scam_ifort/src/physics/cam/clubb_intr.F90(3544): error #6634: The shape matching rules of actual arguments and dummy arguments have been violated. [THLPRCP_OUT] Component atm build complete with 36 warnings cam built in 242.634662 seconds Component ice build complete with 1 warnings cice built in 605.613019 seconds ERROR: BUILD FAIL: cam.buildlib failed, cat /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.241119-035000 Error building CAM [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run ARM97 with SILHS) Stage "Run ARM97 with SILHS" skipped due to earlier failure(s) [Pipeline] getContext [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile and Run CLUBB) Stage "Compile and Run CLUBB" skipped due to earlier failure(s) [Pipeline] getContext [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Plot) Stage "Plot" skipped due to earlier failure(s) [Pipeline] getContext [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output/ [Pipeline] sh + gzip -d '/home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.*.gz' gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.*.gz: No such file or directory [Pipeline] echo Not all logs were made for ATEX. [Pipeline] sh + gzip -d '/home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.*.gz' gzip: /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.*.gz: No such file or directory [Pipeline] echo Not all logs were made for ARM97. [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE