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Started by an SCM change Obtained jenkins_tests/cam_scam_ifort_ncar_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/cam_scam_ifort_ncar_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_scam_ifort_ncar_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision 67d9ce698f80c739db2dbe35f43c96a20b8270b1 (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f 67d9ce698f80c739db2dbe35f43c96a20b8270b1 # timeout=10 Commit message: "Autoupdated SILHS Commit 7dab4b45efa0845b25a3ab7e6f68148f5dd139f3 Author: bmg929 Date: Sun Jul 14 02:52:35 2024 -0500 I am updating the SILHS code that calculates k_lh_start to work consistently with ghostless CLUBB. This commit is BIT_CHANGING." > git rev-list --no-walk ddbf527f73f88f37c06a2bb9c975dad41a92941d # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Externals and Copy Custom Files) [Pipeline] sh + python run_scripts/set_up_cam_coarse_res.py . Checking out externals... Copying ccs_config files [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Sed Commands) [Pipeline] sh + sed -i 's/COMPILER=.*/COMPILER="intel"/g' run_scripts/run_scam.bash [Pipeline] sh + sed -i 's/DEBUG="TRUE"/DEBUG="FALSE"/g' run_scripts/run_scam.bash [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_atex /home/jenkins/cam_output/scratch/test_scam_arm97 [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run atex) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju ++ LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju ++ source /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + run_scripts/run_scam.bash atex ----- Case Setup ----- Compset longname is 2000_CAM60%SCAM_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1997-06-18 Compset specific settings: name is START_TOD and value is 84585 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 36.6 Compset specific settings: name is PTS_LON and value is 262.5 Machine is larson-group Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAM_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': -1, 'NTASKS_LND': -1, 'NTASKS_ROF': -1, 'NTASKS_ICE': -1, 'NTASKS_OCN': -1, 'NTASKS_GLC': -1, 'NTASKS_WAV': -1, 'NTASKS_CPL': -1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAM_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-19-g67d9ce69 Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex This component includes user_mods /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex/shell_commands FROM: /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex Adding user mods directory /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/usermods_dirs/scam_atex RUN: /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex/shell_commands FROM: /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_scam_ifort_ncar_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_scam_ifort_ncar_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex sharedlib_only is False model_only is False Generating component namelists as part of build 2024-07-15 03:26:48 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_atex/run/atm_in 2024-07-15 03:26:48 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2024-07-15 03:26:49 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cice//cime_config/buildnml 2024-07-15 03:26:49 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2024-07-15 03:26:49 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2024-07-15 03:26:49 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2024-07-15 03:26:49 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2024-07-15 03:26:49 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2024-07-15 03:26:49 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/gptl.bldlog.240715-032648 Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/build_scripts/buildlib.gptl Building mct with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/mct.bldlog.240715-032648 Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/build_scripts/buildlib.mct Component mct build complete with 110 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/pio.bldlog.240715-032648 Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/csm_share.bldlog.240715-032648 Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/buildlib.csm_share Component csm_share build complete with 13 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_atex/bld/CDEPS.bldlog.240715-032648 Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_atex/bld/lnd.bldlog.240715-032648 Component lnd build complete with 17 warnings clm built in 80.675543 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_atex/bld/atm.bldlog.240715-032648 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_atex/bld/ice.bldlog.240715-032648 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_atex/bld/ocn.bldlog.240715-032648 docn built in 0.940003 seconds cice built in 102.880383 seconds Component atm build complete with 38 warnings cam built in 302.984886 seconds Building cesm from /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_atex/bld/cesm.bldlog.240715-032648 Component cesm exe build complete with 1 warnings Total build time: 594.376318 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2024-07-15 03:36:43 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_atex/run/atm_in 2024-07-15 03:36:43 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2024-07-15 03:36:43 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cice//cime_config/buildnml 2024-07-15 03:36:44 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2024-07-15 03:36:44 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2024-07-15 03:36:44 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2024-07-15 03:36:44 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2024-07-15 03:36:44 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2024-07-15 03:36:44 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex 2024-07-15 03:36:45 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_atex/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_atex/run/atm_in 2024-07-15 03:36:45 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2024-07-15 03:36:45 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cice//cime_config/buildnml 2024-07-15 03:36:45 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2024-07-15 03:36:45 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2024-07-15 03:36:45 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2024-07-15 03:36:45 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2024-07-15 03:36:45 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2024-07-15 03:36:45 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_atex/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_atex/bld/cesm.exe >> cesm.log.$LID 2>&1 No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run arm97 with SILHS) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju ++ LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju ++ source /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ulimit -s 8388608 + run_scripts/run_scam.bash -s arm97 ----- Case Setup ----- Compset longname is 2000_CAM60%SCAM_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1997-06-18 Compset specific settings: name is START_TOD and value is 84585 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 36.6 Compset specific settings: name is PTS_LON and value is 262.5 Machine is larson-group Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAM_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': -1, 'NTASKS_LND': -1, 'NTASKS_ROF': -1, 'NTASKS_ICE': -1, 'NTASKS_OCN': -1, 'NTASKS_GLC': -1, 'NTASKS_WAV': -1, 'NTASKS_CPL': -1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAM_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-19-g67d9ce69 Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_arm97 This component includes user_mods /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_arm97/shell_commands FROM: /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_arm97 Adding user mods directory /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/usermods_dirs/scam_arm97 RUN: /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_arm97/shell_commands FROM: /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_arm97 Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_scam_ifort_ncar_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_scam_ifort_ncar_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_arm97 sharedlib_only is False model_only is False Generating component namelists as part of build 2024-07-15 03:37:05 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_arm97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_arm97/run/atm_in 2024-07-15 03:37:05 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2024-07-15 03:37:05 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cice//cime_config/buildnml 2024-07-15 03:37:06 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2024-07-15 03:37:06 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2024-07-15 03:37:06 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2024-07-15 03:37:06 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2024-07-15 03:37:06 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2024-07-15 03:37:06 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_arm97/bld/gptl.bldlog.240715-033705 Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/build_scripts/buildlib.gptl Building mct with output to file /home/jenkins/cam_output/scratch/test_scam_arm97/bld/mct.bldlog.240715-033705 Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/build_scripts/buildlib.mct Component mct build complete with 110 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_arm97/bld/pio.bldlog.240715-033705 Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_arm97/bld/csm_share.bldlog.240715-033705 Calling /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/buildlib.csm_share Traceback (most recent call last): File "/home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/utils.py", line 705, in run_sub_or_cmd getattr(mod, subname)(*subargs) File "/home/jenkins/workspace/cam_scam_ifort_ncar_test/share/buildlib.csm_share", line 158, in buildlib run_bld_cmd_ensure_logging(cmd, logger) File "/home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/utils.py", line 2614, in run_bld_cmd_ensure_logging expect(stat == 0, filter_unicode(errput)) File "/home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/utils.py", line 176, in expect raise exc_type(msg) CIME.utils.CIMEError: ERROR: cat: Srcfiles: No such file or directory icx: warning: overriding '-ffp-model=precise' option with '-ffp-model=fast' [-Woverriding-t-option] icx: warning: overriding '-ffp-model=precise' option with '-ffp-model=fast' [-Woverriding-t-option] icx: warning: overriding '-ffp-model=precise' option with '-ffp-model=fast' [-Woverriding-t-option] In file included from /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/RandNum/src/dsfmt_f03/dSFMT_utils.c:1: /home/jenkins/cam_output/scratch/test_scam_arm97/bld/intel/mpich/nodebug/nothreads/nuopc/nuopc/esmf/c1a1l1i1o1/include/dSFMT.h:46:4: warning: "DSFMT_MEXP is not defined. I assume DSFMT_MEXP is 19937." [-W#warnings] #warning "DSFMT_MEXP is not defined. I assume DSFMT_MEXP is 19937." ^ In file included from /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/RandNum/src/dsfmt_f03/dSFMT.c:17: In file included from /home/jenkins/cam_output/scratch/test_scam_arm97/bld/intel/mpich/nodebug/nothreads/nuopc/nuopc/esmf/c1a1l1i1o1/include/dSFMT-params.h:4: /home/jenkins/cam_output/scratch/test_scam_arm97/bld/intel/mpich/nodebug/nothreads/nuopc/nuopc/esmf/c1a1l1i1o1/include/dSFMT.h:46:4: warning: "DSFMT_MEXP is not defined. I assume DSFMT_MEXP is 19937." [-W#warnings] #warning "DSFMT_MEXP is not defined. I assume DSFMT_MEXP is 19937." ^ 1 warning generated. ifx: command line warning #10148: option '-no-prec-sqrt' not supported ifx: command line warning #10148: option '-no-prec-sqrt' not supported /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/src/stubs/smartredis/client.F90(120): warning #6178: The return value of this FUNCTION has not been defined. [KEY_EXISTS] logical function key_exists(this, key) -----------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/src/stubs/smartredis/client.F90(127): warning #6178: The return value of this FUNCTION has not been defined. [MODEL_EXISTS] logical function model_exists(this, model_name) -----------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/src/stubs/smartredis/client.F90(134): warning #6178: The return value of this FUNCTION has not been defined. [TENSOR_EXISTS] logical function tensor_exists(this, tensor_name) -----------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/src/stubs/smartredis/client.F90(141): warning #6178: The return value of this FUNCTION has not been defined. [POLL_TENSOR] logical function poll_tensor( this, tensor_name, poll_frequency_ms, num_tries ) -----------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/src/stubs/smartredis/client.F90(150): warning #6178: The return value of this FUNCTION has not been defined. [POLL_MODEL] logical function poll_model( this, model_name, poll_frequency_ms, num_tries ) -----------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/src/stubs/smartredis/client.F90(159): warning #6178: The return value of this FUNCTION has not been defined. [POLL_KEY] logical function poll_key( this, key, poll_frequency_ms, num_tries ) -----------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/src/stubs/smartredis/client.F90(265): warning #6843: A dummy argument with an explicit INTENT(OUT) declaration is not given an explicit value. [MODEL] subroutine get_model(this, key, model) --------------------------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/src/stubs/smartredis/client.F90(314): warning #6843: A dummy argument with an explicit INTENT(OUT) declaration is not given an explicit value. [SCRIPT] subroutine get_script(this, key, script) ---------------------------------^ ifx: command line warning #10148: option '-no-prec-sqrt' not supported 1 warning generated. ifx: command line warning #10148: option '-no-prec-sqrt' not supported /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/src/shr_sys_mod.F90(105): warning #6843: A dummy argument with an explicit INTENT(OUT) declaration is not given an explicit value. [RCODE] SUBROUTINE shr_sys_chdir(path, rcode) -------------------------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/src/mct_mod.F90(767): remark #5140: Unrecognized directive !DIR$ PREFERVECTOR ------------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/share/src/mct_mod.F90(825): remark #5140: Unrecognized directive !DIR$ PREFERVECTOR ------------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cmeps/cesm/nuopc_cap_share/seq_drydep_mod.F90(3): remark #6536: All symbols from this module are already visible due to another USE; the ONLY clause will have no effect. Rename clauses, if any, will be honored. [SHR_DRYDEP_MOD] use shr_drydep_mod, only: seq_drydep_setHCoeff=>shr_drydep_setHCoeff ------^ shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(20): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [SHR_STREAM_MOD] use shr_stream_mod ! stream data type and methods ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(21): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [SHR_STRING_MOD] use shr_string_mod ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(22): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [SHR_TINTERP_MOD] use shr_tinterp_mod ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(23): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [SHR_DMODEL_MOD] use shr_dmodel_mod ! shr data model stuff ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(24): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [SHR_MCT_MOD] use shr_mct_mod ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(25): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [MCT_MOD] use mct_mod ! mct ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(26): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PERF_MOD] use perf_mod ! timing ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(6): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [SHR_CONST_MOD] use shr_const_mod , only : SHR_CONST_PI ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(10): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [SHR_SYS_MOD] use shr_sys_mod , only : shr_sys_abort, shr_sys_flush ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(11): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [SHR_MPI_MOD] use shr_mpi_mod , only : shr_mpi_bcast ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(12): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [SHR_FILE_MOD] use shr_file_mod , only : shr_file_getunit, shr_file_freeunit ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(15): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [SHR_CAL_MOD] use shr_cal_mod , only : shr_cal_calendarname, shr_cal_timeSet ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(18): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [SHR_ORB_MOD] use shr_orb_mod , only : shr_orb_decl, shr_orb_cosz, shr_orb_undef_real ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(19): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [SHR_NL_MOD] use shr_nl_mod , only : shr_nl_find_group_name ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(7): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [SHR_KIND_MOD] use shr_kind_mod , only : IN=>SHR_KIND_IN, R8=>SHR_KIND_R8 ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(13): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [SHR_LOG_MOD] use shr_log_mod , only : loglev => shr_log_Level ------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(67): error #6683: A kind type parameter must be a compile-time constant. [IN] integer(IN) :: debug = 0 ! local debug flag ----------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(68): error #6683: A kind type parameter must be a compile-time constant. [IN] integer(IN) ,parameter :: nStrMax = 30 ----------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(69): error #6683: A kind type parameter must be a compile-time constant. [IN] integer(IN) ,parameter :: nVecMax = 30 ----------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(72): error #6683: A kind type parameter must be a compile-time constant. [R8] real(R8) ,parameter, private :: dtlimit_default = 1.5_R8 -------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(72): error #6498: The use-name for this local-name is not defined. [R8] real(R8) ,parameter, private :: dtlimit_default = 1.5_R8 ----------------------------------------------------------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(72): error #6975: A kind-param must be a digit-string or a scalar-int-constant-name. [R8] real(R8) ,parameter, private :: dtlimit_default = 1.5_R8 ----------------------------------------------------------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(76): error #6498: The use-name for this local-name is not defined. [CL] character(CL) :: dataMode ! flags physics options wrt input data ---------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(76): error #6223: A specification expression is invalid. [CL] character(CL) :: dataMode ! flags physics options wrt input data ---------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(77): error #6498: The use-name for this local-name is not defined. [CL] character(CL) :: streams (nStrMax) ! stream description file names ---------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(77): error #6223: A specification expression is invalid. [CL] character(CL) :: streams (nStrMax) ! stream description file names ---------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(78): error #6498: The use-name for this local-name is not defined. [CL] character(CL) :: taxMode (nStrMax) ! time axis cycling mode ---------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(78): error #6223: A specification expression is invalid. [CL] character(CL) :: taxMode (nStrMax) ! time axis cycling mode ---------------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(79): error #6683: A kind type parameter must be a compile-time constant. [R8] real(R8) :: dtlimit (nStrMax) ! dt max/min limit ----------^ /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90(80): error #6498: The use-name for this local-name is not defined. [CL] character(CL) :: vectors (nVecMax) ! define vectors to vector map ---------------^ /tmp/ifx0912118623n5K3fa/ifxiF1ofa.i90(1849): catastrophic error: Too many errors, exiting compilation aborted for /home/jenkins/workspace/cam_scam_ifort_ncar_test/components/cpl7/components/data_comps_mct/streams/shr_strdata_mod.F90 (code 1) make: *** [/home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_arm97/Tools/Makefile:1001: shr_strdata_mod.o] Error 1 During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_arm97/./case.build", line 267, in <module> _main_func(__doc__) File "/home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/scripts/test_scam_arm97/./case.build", line 251, in _main_func success = build.case_build( File "/home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/build.py", line 1327, in case_build return run_and_log_case_status(functor, cb, caseroot=caseroot) File "/home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/utils.py", line 2480, in run_and_log_case_status rv = func() File "/home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/build.py", line 1311, in <lambda> functor = lambda: _case_build_impl( File "/home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/build.py", line 1201, in _case_build_impl logs = _build_libraries( File "/home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/build.py", line 835, in _build_libraries run_sub_or_cmd( File "/home/jenkins/workspace/cam_scam_ifort_ncar_test/cime/CIME/utils.py", line 714, in run_sub_or_cmd with open(logfile, "a") as log_fd: FileNotFoundError: [Errno 2] No such file or directory: '/home/jenkins/cam_output/scratch/test_scam_arm97/bld/csm_share.bldlog.240715-033705' Error building CAM [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output/ [Pipeline] sh + gzip -d '/home/jenkins/cam_output/scratch/test_scam_atex/bld/atm.bldlog.*.gz' gzip: /home/jenkins/cam_output/scratch/test_scam_atex/bld/atm.bldlog.*.gz: No such file or directory [Pipeline] echo Not all logs were made for atex. [Pipeline] sh + gzip -d '/home/jenkins/cam_output/scratch/test_scam_arm97/bld/atm.bldlog.*.gz' gzip: /home/jenkins/cam_output/scratch/test_scam_arm97/bld/atm.bldlog.*.gz: No such file or directory [Pipeline] echo Not all logs were made for arm97. [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE