Console Output

Started by user Steffen Domke
Obtained jenkins_tests/cam_global_ERP_Ln9_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on malan in /home/jenkins/workspace/cam_global_ERP_Ln9_gfortran_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/cam.git
 > git init /home/jenkins/workspace/cam_global_ERP_Ln9_gfortran_test # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
 > git --version # timeout=10
 > git --version # 'git version 2.30.2'
 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
Checking out Revision 5c652c41938c80cdbc5b158cead6bfa0036fa232 (refs/remotes/origin/clubb_silhs_devel)
Commit message: "Autoupdated CLUBB_core Commit 455fbc12e83f4475429afcff526571537f9be66a Author: domkesteffen Date: Thu Feb 20 13:12:53 2025 -0600 Fixed equality check in pdf_closure_module (#1229) CLUBB ticket #975"
 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 5c652c41938c80cdbc5b158cead6bfa0036fa232 # timeout=10
 > git rev-list --no-walk 5c652c41938c80cdbc5b158cead6bfa0036fa232 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Checkout Externals and Copy Custom Files)
[Pipeline] sh
+ python run_scripts/set_up_repo.py .
Aborted by Vince Larson
Sending interrupt signal to process
Cmd('git') failed due to: exit code(128)
  cmdline: git fetch origin --tags
  stderr: 'error: index-pack died of signal 15
fatal: index-pack failed'
Checking out externals...
Copying ccs_config files
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run CAM)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop21-skylake_avx512/gcc-12.2.0/lmod-8.7.37-d6vyrvvncsuguygovgvimahv5kfyaunp/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop21-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop21-x86_64/Core
+ rm -rf /home/jenkins/cam_output/scratch/ERP_Ln9.f10_f10_mg37.F2000climo.larson-group_gnu.cam-outfrq9s.20250220_134751_f93r5k
+ cime/scripts/create_test ERP_Ln9.f10_f10_mg37.F2000climo.larson-group_gnu.cam-outfrq9s
/home/jenkins/workspace/cam_global_ERP_Ln9_gfortran_test@tmp/durable-13e8b714/script.sh.copy: line 3: cime/scripts/create_test: No such file or directory
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] cleanWs
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output
[Pipeline] sh
+ gzip -d '/home/jenkins/cam_output/scratch/ERP_Ln9.f10_f10_mg37.F2000climo.larson-group_gnu.cam-outfrq9s.*/bld/atm.bldlog.*.gz'
gzip: /home/jenkins/cam_output/scratch/ERP_Ln9.f10_f10_mg37.F2000climo.larson-group_gnu.cam-outfrq9s.*/bld/atm.bldlog.*.gz: No such file or directory
[Pipeline] echo
Not all logs were made.
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 127
Finished: ABORTED