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Started by user Gunther Huebler
Obtained jenkins_tests/cam_global_regression_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git
Running in Durability level: MAX_SURVIVABILITY
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/cam_global_regression_gfortran_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/cam.git
 > git init /home/jenkins/workspace/cam_global_regression_gfortran_test # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
 > git --version # timeout=10
 > git --version # 'git version 1.8.3.1'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 > git fetch --tags --progress https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
Checking out Revision 0805082d217c3a8009d33721b75ff43841c65a4a (refs/remotes/origin/clubb_silhs_devel)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 0805082d217c3a8009d33721b75ff43841c65a4a # timeout=10
Commit message: "Fixed a goof."
 > git rev-list --no-walk 0805082d217c3a8009d33721b75ff43841c65a4a # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Check out externals)
[Pipeline] sh
+ python manage_externals/checkout_externals -e Externals.cfg
Processing externals description file : Externals.cfg
Processing externals description file : Externals_CAM.cfg
Checking status of externals: clm, mosart, cime, cpl7, parallelio, cice, cmeps, share, fms, cism, rtm, cdeps, cam, pumas, cosp2, atmos_phys, chem_proc, mpas, atmos_cubed_sphere, carma, cice6, mct, 
Checking out externals: clm, mosart, cime, cpl7, parallelio, cice, share, cism, rtm, cdeps, cam, cmeps, mct, 
Processing externals description file : Externals_CLM.cfg
Checking out externals: fates, ptclm, 
Processing externals description file : Externals_CISM.cfg
Checking out externals: source_cism, 
Processing externals description file : Externals_CDEPS.cfg
Checking out externals: genf90, fox, 
Processing externals description file : Externals_CAM.cfg
Checking out externals: pumas, cosp2, atmos_phys, chem_proc, mpas, atmos_cubed_sphere, carma, 

[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Copy Config Files)
[Pipeline] sh
+ cp -f cime_config_cesm_machines_files/config_compilers.xml cime/config/cesm/machines/config_compilers.xml
+ cp -f cime_config_cesm_machines_files/config_machines.xml cime/config/cesm/machines/config_machines.xml
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Make cprnc)
[Pipeline] dir
Running in /home/jenkins/workspace/cam_global_regression_gfortran_test/cime/tools/cprnc
[Pipeline] {
[Pipeline] sh
+ bash -c 'export LIB_NETCDF=/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib; export INC_NETCDF=/usr/local/NETCDF-Fortran-4.4.5-gfortran/include; ../configure --macros-format=Makefile --mpilib=mpi-serial; source ./.env_mach_specific.sh; make'
perl ../../src/externals/genf90/genf90.pl compare_vars_mod.F90.in > compare_vars_mod.F90
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90  -c -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fallow-argument-mismatch -fallow-invalid-boz  -O  -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I. prec.F90
f951: Warning: Nonexistent include directory ‘/usr/local/mpi/MPICH-3.3.1-gfortran-10/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/usr/local/mpi/MPICH-3.3.1-gfortran-10/include’ [-Wmissing-include-dirs]
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90  -c -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fallow-argument-mismatch -fallow-invalid-boz  -O  -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I. filestruct.F90
f951: Warning: Nonexistent include directory ‘/usr/local/mpi/MPICH-3.3.1-gfortran-10/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/usr/local/mpi/MPICH-3.3.1-gfortran-10/include’ [-Wmissing-include-dirs]
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90  -c -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fallow-argument-mismatch -fallow-invalid-boz  -O  -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I. utils.F90
f951: Warning: Nonexistent include directory ‘/usr/local/mpi/MPICH-3.3.1-gfortran-10/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/usr/local/mpi/MPICH-3.3.1-gfortran-10/include’ [-Wmissing-include-dirs]
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90  -c -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fallow-argument-mismatch -fallow-invalid-boz  -O  -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I. compare_vars_mod.F90
f951: Warning: Nonexistent include directory ‘/usr/local/mpi/MPICH-3.3.1-gfortran-10/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/usr/local/mpi/MPICH-3.3.1-gfortran-10/include’ [-Wmissing-include-dirs]
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90  -c -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fallow-argument-mismatch -fallow-invalid-boz  -O  -I/usr/local/NETCDF-Fortran-4.4.5-gfortran/include -I. cprnc.F90
f951: Warning: Nonexistent include directory ‘/usr/local/mpi/MPICH-3.3.1-gfortran-10/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/usr/local/mpi/MPICH-3.3.1-gfortran-10/include’ [-Wmissing-include-dirs]
/usr/local/mpi/MPICH-3.3.1-gfortran/bin/mpif90  -o cprnc compare_vars_mod.o cprnc.o filestruct.o prec.o utils.o -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff -Wl,-rpath /usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -L/usr/local/NETCDF-Fortran-4.4.5-gfortran/lib -lnetcdff -L/usr/local/NETCDF-C-4.7.0-gfortran/lib -lnetcdf -L/usr/local/lapack-3.8.0 -llapack -lrefblas 
/opt/rh/devtoolset-10/root/usr/libexec/gcc/x86_64-redhat-linux/10/ld: cannot find -lmpifort
/opt/rh/devtoolset-10/root/usr/libexec/gcc/x86_64-redhat-linux/10/ld: cannot find -lmpi
collect2: error: ld returned 1 exit status
make: *** [Makefile:77: cprnc] Error 1
[Pipeline] }
[Pipeline] // dir
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run CAM)
Stage "Run CAM" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Display Log Files)
Stage "Display Log Files" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] cleanWs
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output
chmod: changing permissions of ‘/home/jenkins/cam_output/scratch/ERP_Ln9.f10_f10_mg37.F2000climo.nelson_gnu.cam-outfrq9s.20211231_034332_yuzy0c/bld/.atm.bldlog.211231-034749.swp’: Operation not permitted
[Pipeline] }
[Pipeline] // script
Error when executing always post condition:
hudson.AbortException: script returned exit code 1
	at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.handleExit(DurableTaskStep.java:659)
	at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.check(DurableTaskStep.java:605)
	at org.jenkinsci.plugins.workflow.steps.durable_task.DurableTaskStep$Execution.run(DurableTaskStep.java:549)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

[Pipeline] script
[Pipeline] {
[Pipeline] emailext
Sending email to: messnermet@uwm.edu
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 2
Finished: FAILURE