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Started by an SCM change Obtained jenkins_tests/cam_clubb_generalized_grid_scam_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision 294f7921fa437e0b541244f89b96a679d039d4ba (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f 294f7921fa437e0b541244f89b96a679d039d4ba # timeout=10 Commit message: "Autoupdated CLUBB_core Commit 003b6cf728915e52cba23dc54bd3ae5ea9ee6364 Author: st3113n Date: Thu May 22 20:25:09 2025 -0500 add fix for grid generalization" > git rev-list --no-walk e5ec9afb7da53442bdee3952105faf142b9c3007 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Externals and Copy Custom Files) [Pipeline] sh + python run_scripts/set_up_repo.py . Checking out externals... Copying ccs_config files [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ARM97 [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX_ascending [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ARM97_ascending [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX_descending [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ARM97_descending [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Generalized Grid Test for ATEX and ARM97 with SILHS) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ulimit -s 8388608 + run_scripts/run_generalized_grid_scam_test.bash ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-827-g294f7921 Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/shell_commands FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX sharedlib_only is False model_only is False Generating component namelists as part of build 2025-05-23 03:07:00 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-23 03:07:00 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:07:00 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-05-23 03:07:01 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:07:01 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:07:01 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:07:01 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:07:01 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:07:01 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250523-030700 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250523-030700 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250523-030700 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share Component csm_share build complete with 246 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250523-030700 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250523-030700 Component lnd build complete with 2468 warnings clm built in 46.584325 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250523-030700 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250523-030700 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250523-030700 docn built in 0.617968 seconds Component atm build complete with 5515 warnings cam built in 77.547594 seconds Component ice build complete with 384 warnings cice built in 79.669837 seconds Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250523-030700 Component cesm exe build complete with 49 warnings Total build time: 205.319920 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-05-23 03:10:25 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-23 03:10:26 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:10:26 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-05-23 03:10:26 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:10:26 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:10:26 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:10:26 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:10:26 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:10:26 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX 2025-05-23 03:10:27 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-23 03:10:27 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:10:28 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-05-23 03:10:28 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:10:28 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:10:28 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:10:28 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:10:28 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:10:28 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1997-06-18 Compset specific settings: name is STOP_N and value is 695 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 84585 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 36.6 Compset specific settings: name is PTS_LON and value is 262.5 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-827-g294f7921 Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/shell_commands FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 sharedlib_only is False model_only is False Generating component namelists as part of build 2025-05-23 03:10:49 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-05-23 03:10:49 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:10:49 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-05-23 03:10:49 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:10:49 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:10:49 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:10:49 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:10:49 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:10:49 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/gptl.bldlog.250523-031048 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/pio.bldlog.250523-031048 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/csm_share.bldlog.250523-031048 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share Component csm_share build complete with 246 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/CDEPS.bldlog.250523-031048 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/lnd.bldlog.250523-031048 Component lnd build complete with 2468 warnings clm built in 48.295672 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.250523-031048 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ice.bldlog.250523-031048 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ocn.bldlog.250523-031048 docn built in 0.885941 seconds Component atm build complete with 5525 warnings cam built in 82.584772 seconds Component ice build complete with 384 warnings cice built in 83.062080 seconds Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.250523-031048 Component cesm exe build complete with 49 warnings Total build time: 211.206450 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-05-23 03:14:20 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-05-23 03:14:20 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:14:21 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-05-23 03:14:21 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:14:21 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:14:21 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:14:21 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:14:21 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:14:21 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 2025-05-23 03:14:22 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-05-23 03:14:22 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:14:22 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-05-23 03:14:22 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:14:22 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:14:22 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:14:22 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:14:22 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:14:22 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ARM97/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.exe >> cesm.log.$LID 2>&1 No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-827-g294f7921 Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/shell_commands FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX sharedlib_only is False model_only is False Generating component namelists as part of build 2025-05-23 03:17:54 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-23 03:17:55 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:17:55 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-05-23 03:17:55 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:17:55 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:17:55 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:17:55 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:17:55 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:17:55 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250523-031754 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250523-031754 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250523-031754 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share Component csm_share build complete with 246 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250523-031754 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250523-031754 Component lnd build complete with 2468 warnings clm built in 51.864860 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250523-031754 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250523-031754 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250523-031754 docn built in 0.906642 seconds Component ice build complete with 384 warnings cice built in 79.060678 seconds Component atm build complete with 5515 warnings cam built in 81.233052 seconds Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250523-031754 Component cesm exe build complete with 49 warnings Total build time: 213.090701 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-05-23 03:21:28 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-23 03:21:28 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:21:28 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-05-23 03:21:28 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:21:28 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:21:28 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:21:28 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:21:28 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:21:28 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX 2025-05-23 03:21:29 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in 2025-05-23 03:21:30 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:21:30 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-05-23 03:21:30 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:21:30 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:21:30 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:21:30 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:21:30 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:21:30 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1 No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! ----- Case Setup ----- Compset longname is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is clm5.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1997-06-18 Compset specific settings: name is STOP_N and value is 695 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 84585 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 36.6 Compset specific settings: name is PTS_LON and value is 262.5 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes other settings: {} Pes comments: none setting additional fields from config_pes: {} Compset is: 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] This is a CESM scientifically supported compset at this resolution. No project info available No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-827-g294f7921 Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/shell_commands FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive Creating file case.st_archive Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 sharedlib_only is False model_only is False Generating component namelists as part of build 2025-05-23 03:21:50 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-05-23 03:21:50 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:21:51 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-05-23 03:21:51 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:21:51 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:21:51 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:21:51 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:21:51 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:21:51 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/gptl.bldlog.250523-032150 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/pio.bldlog.250523-032150 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/csm_share.bldlog.250523-032150 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share Component csm_share build complete with 246 warnings Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/CDEPS.bldlog.250523-032150 Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/lnd.bldlog.250523-032150 Component lnd build complete with 2468 warnings clm built in 50.586711 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.250523-032150 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ice.bldlog.250523-032150 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ocn.bldlog.250523-032150 docn built in 0.890761 seconds Component atm build complete with 5525 warnings cam built in 84.856973 seconds Component ice build complete with 384 warnings cice built in 89.188818 seconds Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.250523-032150 Component cesm exe build complete with 49 warnings Total build time: 222.722418 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run Submission ----- 2025-05-23 03:25:33 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-05-23 03:25:33 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:25:34 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-05-23 03:25:34 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:25:34 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:25:34 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:25:34 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:25:34 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:25:34 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cice.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/ctsm.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97 2025-05-23 03:25:35 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in 2025-05-23 03:25:35 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml WARNING: CLM is starting up from a cold state 2025-05-23 03:25:35 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml 2025-05-23 03:25:36 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2025-05-23 03:25:36 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2025-05-23 03:25:36 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2025-05-23 03:25:36 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2025-05-23 03:25:36 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2025-05-23 03:25:36 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ARM97/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.exe >> cesm.log.$LID 2>&1 No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 Submitted job case.run with id None Success! There were no differences detected! [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS