+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ ulimit -s 8388608
+ run_scripts/run_generalized_grid_scam_test.bash
----- Case Setup -----
Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam6 physics:
LND component is clm5.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15
Compset specific settings: name is STOP_N and value is 47
Compset specific settings: name is STOP_OPTION and value is nhours
Compset specific settings: name is START_TOD and value is 0
Compset specific settings: name is PTS_MODE and value is TRUE
Compset specific settings: name is PTS_LAT and value is 15.0
Compset specific settings: name is PTS_LON and value is 345.0
Machine is larson-group
vid is comment
vid is ntasks
vid is nthrds
vid is rootpe
Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7
Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP
Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1}
Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1}
Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0}
Pes setting: pstrid is {}
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP
Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7
Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp']
This is a CESM scientifically supported compset at this resolution.
No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-821-g151044a3
Batch_system_type is none
Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/shell_commands
FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Run configuration -----
----- Compile -----
Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
sharedlib_only is False
model_only is False
Generating component namelists as part of build
2025-05-22 03:07:01 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in
2025-05-22 03:07:01 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
2025-05-22 03:07:01 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
2025-05-22 03:07:02 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2025-05-22 03:07:02 rof
Create namelist for component srof
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
2025-05-22 03:07:02 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2025-05-22 03:07:02 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2025-05-22 03:07:02 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2025-05-22 03:07:02 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250522-030701
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl
Component gptl build complete with 21 warnings
Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250522-030701
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250522-030701
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share
Component csm_share build complete with 246 warnings
Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250522-030701
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib
Component CDEPS build complete with 176 warnings
- Building clm library
Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250522-030701
Component lnd build complete with 2468 warnings
clm built in 46.513999 seconds
- Building atm Library
Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250522-030701
- Building ice Library
Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250522-030701
- Building ocn Library
Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250522-030701
docn built in 0.685693 seconds
Component atm build complete with 5515 warnings
Component ice build complete with 384 warnings
cice built in 79.600921 seconds
cam built in 79.603503 seconds
Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250522-030701
Component cesm exe build complete with 49 warnings
Total build time: 206.236223 seconds
MODEL BUILD HAS FINISHED SUCCESSFULLY
----- Run Submission -----
2025-05-22 03:10:27 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in
2025-05-22 03:10:28 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
2025-05-22 03:10:28 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
2025-05-22 03:10:28 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2025-05-22 03:10:28 rof
Create namelist for component srof
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
2025-05-22 03:10:28 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2025-05-22 03:10:28 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2025-05-22 03:10:28 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2025-05-22 03:10:28 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Checking that inputdata is available as part of case submission
Loading input file list: 'Buildconf/cice.input_data_list'
Loading input file list: 'Buildconf/cpl.input_data_list'
Loading input file list: 'Buildconf/cam.input_data_list'
Loading input file list: 'Buildconf/docn.input_data_list'
Loading input file list: 'Buildconf/ctsm.input_data_list'
Check case OK
submit_jobs case.run
Submit job case.run
Starting job script case.run
Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
2025-05-22 03:10:29 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in
2025-05-22 03:10:29 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
2025-05-22 03:10:30 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
2025-05-22 03:10:30 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2025-05-22 03:10:30 rof
Create namelist for component srof
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
2025-05-22 03:10:30 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2025-05-22 03:10:30 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2025-05-22 03:10:30 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2025-05-22 03:10:30 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
-------------------------------------------------------------------------
- Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run
- Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata
- Checking for required input datasets in DIN_LOC_ROOT
-------------------------------------------------------------------------
run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1
No timing file found in run directory
check for resubmit
dout_s False
mach larson-group
resubmit_num 0
Submitted job case.run with id None
Success!
----- Case Setup -----
Compset longname is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam6 physics:
LND component is clm5.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 1997-06-18
Compset specific settings: name is STOP_N and value is 695
Compset specific settings: name is STOP_OPTION and value is nhours
Compset specific settings: name is START_TOD and value is 84585
Compset specific settings: name is PTS_MODE and value is TRUE
Compset specific settings: name is PTS_LAT and value is 36.6
Compset specific settings: name is PTS_LON and value is 262.5
Machine is larson-group
vid is comment
vid is ntasks
vid is nthrds
vid is rootpe
Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7
Pes setting: compset is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP
Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1}
Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1}
Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0}
Pes setting: pstrid is {}
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
Compset is: 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP
Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7
Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp']
This is a CESM scientifically supported compset at this resolution.
No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-821-g151044a3
Batch_system_type is none
Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/shell_commands
FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Run configuration -----
----- Compile -----
Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
sharedlib_only is False
model_only is False
Generating component namelists as part of build
2025-05-22 03:10:51 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in
2025-05-22 03:10:51 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
2025-05-22 03:10:52 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
2025-05-22 03:10:52 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2025-05-22 03:10:52 rof
Create namelist for component srof
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
2025-05-22 03:10:52 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2025-05-22 03:10:52 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2025-05-22 03:10:52 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2025-05-22 03:10:52 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/gptl.bldlog.250522-031051
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl
Component gptl build complete with 21 warnings
Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/pio.bldlog.250522-031051
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/csm_share.bldlog.250522-031051
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share
Component csm_share build complete with 246 warnings
Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/CDEPS.bldlog.250522-031051
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib
Component CDEPS build complete with 176 warnings
- Building clm library
Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/lnd.bldlog.250522-031051
Component lnd build complete with 2468 warnings
clm built in 50.126336 seconds
- Building atm Library
Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.250522-031051
- Building ice Library
Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ice.bldlog.250522-031051
- Building ocn Library
Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ocn.bldlog.250522-031051
docn built in 0.866177 seconds
Component ice build complete with 384 warnings
cice built in 80.724219 seconds
Component atm build complete with 5525 warnings
cam built in 83.660772 seconds
Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.250522-031051
Component cesm exe build complete with 49 warnings
Total build time: 213.461936 seconds
MODEL BUILD HAS FINISHED SUCCESSFULLY
----- Run Submission -----
2025-05-22 03:14:25 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in
2025-05-22 03:14:25 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
2025-05-22 03:14:25 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
2025-05-22 03:14:25 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2025-05-22 03:14:26 rof
Create namelist for component srof
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
2025-05-22 03:14:26 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2025-05-22 03:14:26 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2025-05-22 03:14:26 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2025-05-22 03:14:26 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Checking that inputdata is available as part of case submission
Loading input file list: 'Buildconf/cice.input_data_list'
Loading input file list: 'Buildconf/cpl.input_data_list'
Loading input file list: 'Buildconf/cam.input_data_list'
Loading input file list: 'Buildconf/docn.input_data_list'
Loading input file list: 'Buildconf/ctsm.input_data_list'
Check case OK
submit_jobs case.run
Submit job case.run
Starting job script case.run
Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
2025-05-22 03:14:26 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in
2025-05-22 03:14:27 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
2025-05-22 03:14:27 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
2025-05-22 03:14:27 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2025-05-22 03:14:27 rof
Create namelist for component srof
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
2025-05-22 03:14:27 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2025-05-22 03:14:27 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2025-05-22 03:14:27 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2025-05-22 03:14:27 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
-------------------------------------------------------------------------
- Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ARM97/run
- Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata
- Checking for required input datasets in DIN_LOC_ROOT
-------------------------------------------------------------------------
run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.exe >> cesm.log.$LID 2>&1
No timing file found in run directory
check for resubmit
dout_s False
mach larson-group
resubmit_num 0
Submitted job case.run with id None
Success!
----- Case Setup -----
Compset longname is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam6 physics:
LND component is clm5.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15
Compset specific settings: name is STOP_N and value is 47
Compset specific settings: name is STOP_OPTION and value is nhours
Compset specific settings: name is START_TOD and value is 0
Compset specific settings: name is PTS_MODE and value is TRUE
Compset specific settings: name is PTS_LAT and value is 15.0
Compset specific settings: name is PTS_LON and value is 345.0
Machine is larson-group
vid is comment
vid is ntasks
vid is nthrds
vid is rootpe
Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7
Pes setting: compset is 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP
Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1}
Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1}
Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0}
Pes setting: pstrid is {}
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
Compset is: 2000_CAM60%SCAMATEX_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP
Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7
Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp']
This is a CESM scientifically supported compset at this resolution.
No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-821-g151044a3
Batch_system_type is none
Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/shell_commands
FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Run configuration -----
----- Compile -----
Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
sharedlib_only is False
model_only is False
Generating component namelists as part of build
2025-05-22 03:18:01 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in
2025-05-22 03:18:01 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
2025-05-22 03:18:02 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
2025-05-22 03:18:02 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2025-05-22 03:18:02 rof
Create namelist for component srof
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
2025-05-22 03:18:02 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2025-05-22 03:18:02 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2025-05-22 03:18:02 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2025-05-22 03:18:02 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/gptl.bldlog.250522-031801
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl
Component gptl build complete with 21 warnings
Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/pio.bldlog.250522-031801
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/csm_share.bldlog.250522-031801
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share
Component csm_share build complete with 246 warnings
Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/CDEPS.bldlog.250522-031801
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib
Component CDEPS build complete with 176 warnings
- Building clm library
Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/lnd.bldlog.250522-031801
Component lnd build complete with 2468 warnings
clm built in 49.809828 seconds
- Building atm Library
Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/atm.bldlog.250522-031801
- Building ice Library
Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ice.bldlog.250522-031801
- Building ocn Library
Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/ocn.bldlog.250522-031801
docn built in 0.879631 seconds
Component ice build complete with 384 warnings
cice built in 79.927961 seconds
Component atm build complete with 5515 warnings
cam built in 81.784072 seconds
Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.bldlog.250522-031801
Component cesm exe build complete with 49 warnings
Total build time: 212.246662 seconds
MODEL BUILD HAS FINISHED SUCCESSFULLY
----- Run Submission -----
2025-05-22 03:21:34 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in
2025-05-22 03:21:34 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
2025-05-22 03:21:34 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
2025-05-22 03:21:34 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2025-05-22 03:21:34 rof
Create namelist for component srof
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
2025-05-22 03:21:34 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2025-05-22 03:21:34 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2025-05-22 03:21:34 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2025-05-22 03:21:34 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Checking that inputdata is available as part of case submission
Loading input file list: 'Buildconf/cice.input_data_list'
Loading input file list: 'Buildconf/cpl.input_data_list'
Loading input file list: 'Buildconf/cam.input_data_list'
Loading input file list: 'Buildconf/docn.input_data_list'
Loading input file list: 'Buildconf/ctsm.input_data_list'
Check case OK
submit_jobs case.run
Submit job case.run
Starting job script case.run
Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX
2025-05-22 03:21:35 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ATEX/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX/run/atm_in
2025-05-22 03:21:36 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
2025-05-22 03:21:36 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
2025-05-22 03:21:36 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2025-05-22 03:21:36 rof
Create namelist for component srof
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
2025-05-22 03:21:36 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2025-05-22 03:21:36 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2025-05-22 03:21:36 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2025-05-22 03:21:36 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
-------------------------------------------------------------------------
- Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX/run
- Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata
- Checking for required input datasets in DIN_LOC_ROOT
-------------------------------------------------------------------------
run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX/bld/cesm.exe >> cesm.log.$LID 2>&1
No timing file found in run directory
check for resubmit
dout_s False
mach larson-group
resubmit_num 0
Submitted job case.run with id None
Success!
----- Case Setup -----
Compset longname is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV
Compset specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_compsets.xml
Automatically adding SESP to compset
Compset forcing is 1972-2004
ATM component is CAM cam6 physics:
LND component is clm5.0:Satellite phenology:
ICE component is Sea ICE (cice) model version 6 :prescribed cice
OCN component is DOCN prescribed ocean mode
ROF component is Stub river component
GLC component is Stub glacier (land ice) component
WAV component is Stub wave component
ESP component is Stub external system processing (ESP) component
Pes specification file is /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 1997-06-18
Compset specific settings: name is STOP_N and value is 695
Compset specific settings: name is STOP_OPTION and value is nhours
Compset specific settings: name is START_TOD and value is 84585
Compset specific settings: name is PTS_MODE and value is TRUE
Compset specific settings: name is PTS_LAT and value is 36.6
Compset specific settings: name is PTS_LON and value is 262.5
Machine is larson-group
vid is comment
vid is ntasks
vid is nthrds
vid is rootpe
Pes setting: grid is a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7
Pes setting: compset is 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP
Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1}
Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1}
Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0}
Pes setting: pstrid is {}
Pes other settings: {}
Pes comments: none
setting additional fields from config_pes: {}
Compset is: 2000_CAM60%SCAMARM97_CLM50%SP_CICE%PRES_DOCN%DOM_SROF_SGLC_SWAV_SESP
Grid is: a%T42_l%T42_oi%T42_r%null_g%null_w%null_z%null_m%gx1v7
Components in compset are: ['cam', 'clm', 'cice', 'docn', 'srof', 'sglc', 'swav', 'sesp']
This is a CESM scientifically supported compset at this resolution.
No project info available
No charge_account info available, using value from PROJECT
cesm model version found: cam_4ncar_20240605_2f3c896-821-g151044a3
Batch_system_type is none
Creating Case directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
This component includes user_mods /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
Adding user mods directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/usermods_dirs/scam_mandatory
RUN: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/shell_commands
FROM: /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
Creating batch scripts
Writing case.run script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/ccs_config/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
Running cam.case_setup.py
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
----- Compile Configuration -----
----- Run configuration -----
----- Compile -----
Building case in directory /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
sharedlib_only is False
model_only is False
Generating component namelists as part of build
2025-05-22 03:21:56 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
...calling cam buildcpp to set build time options
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in
2025-05-22 03:21:57 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
2025-05-22 03:21:57 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
2025-05-22 03:21:57 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2025-05-22 03:21:57 rof
Create namelist for component srof
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
2025-05-22 03:21:57 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2025-05-22 03:21:57 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2025-05-22 03:21:57 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2025-05-22 03:21:57 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/gptl.bldlog.250522-032156
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.gptl
Component gptl build complete with 21 warnings
Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/pio.bldlog.250522-032156
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/build_scripts/buildlib.pio
Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/csm_share.bldlog.250522-032156
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/share/buildlib.csm_share
Component csm_share build complete with 246 warnings
Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/CDEPS.bldlog.250522-032156
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/cime_config/buildlib
Component CDEPS build complete with 176 warnings
- Building clm library
Building lnd with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/lnd.bldlog.250522-032156
Component lnd build complete with 2468 warnings
clm built in 52.470772 seconds
- Building atm Library
Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/atm.bldlog.250522-032156
- Building ice Library
Building ice with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ice.bldlog.250522-032156
- Building ocn Library
Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/ocn.bldlog.250522-032156
docn built in 0.882603 seconds
Component ice build complete with 384 warnings
cice built in 86.971055 seconds
Component atm build complete with 5525 warnings
cam built in 97.885700 seconds
Building cesm from /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.bldlog.250522-032156
Component cesm exe build complete with 49 warnings
Total build time: 232.712704 seconds
MODEL BUILD HAS FINISHED SUCCESSFULLY
----- Run Submission -----
2025-05-22 03:25:49 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in
2025-05-22 03:25:50 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
2025-05-22 03:25:50 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
2025-05-22 03:25:50 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2025-05-22 03:25:50 rof
Create namelist for component srof
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
2025-05-22 03:25:50 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2025-05-22 03:25:50 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2025-05-22 03:25:50 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2025-05-22 03:25:50 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
Checking that inputdata is available as part of case submission
Loading input file list: 'Buildconf/cice.input_data_list'
Loading input file list: 'Buildconf/cpl.input_data_list'
Loading input file list: 'Buildconf/cam.input_data_list'
Loading input file list: 'Buildconf/docn.input_data_list'
Loading input file list: 'Buildconf/ctsm.input_data_list'
Check case OK
submit_jobs case.run
Submit job case.run
Starting job script case.run
Generating namelists for /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97
2025-05-22 03:25:52 atm
Create namelist for component cam
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime_config/buildnml
CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/scripts/test_scam_ARM97/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ARM97/run/atm_in
2025-05-22 03:25:52 lnd
Create namelist for component clm
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/clm//cime_config/buildnml
WARNING: CLM is starting up from a cold state
2025-05-22 03:25:52 ice
Create namelist for component cice
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cice//cime_config/buildnml
2025-05-22 03:25:53 ocn
Create namelist for component docn
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cdeps/docn/cime_config/buildnml
docn_mode is prescribed
2025-05-22 03:25:53 rof
Create namelist for component srof
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml
2025-05-22 03:25:53 glc
Create namelist for component sglc
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml
2025-05-22 03:25:53 wav
Create namelist for component swav
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml
2025-05-22 03:25:53 esp
Create namelist for component sesp
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml
2025-05-22 03:25:53 cpl
Create namelist for component drv
Calling /home/jenkins/workspace/cam_clubb_generalized_grid_scam_test/components/cmeps/cime_config/buildnml
Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN']
-------------------------------------------------------------------------
- Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ARM97/run
- Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata
- Checking for required input datasets in DIN_LOC_ROOT
-------------------------------------------------------------------------
run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ARM97/bld/cesm.exe >> cesm.log.$LID 2>&1
No timing file found in run directory
check for resubmit
dout_s False
mach larson-group
resubmit_num 0
Submitted job case.run with id None
Success!
There were no differences detected!
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