Started by user Gunther Huebler Obtained jenkins_tests/cam_clubb_error_handling_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/cam_clubb_error_handling_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_clubb_error_handling_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 # timeout=10 Commit message: "Merge pull request #218 from larson-group/cam6_4_183_clubb_silhs_merge" > git rev-list --no-walk 692f0d3e4af08e9083d2c1fd9a3cd440949f9d89 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Checkout Externals and Copy Custom Files) [Pipeline] sh + python run_scripts/set_up_repo.py . Checking out externals... Sparse checkout cam-sima fxsparse ../.sima_phys_utils_sparse_checkout Successfully checked out cam-sima at sima0_07_000 cam-sima up to date. Sparse checkout mpas fxsparse ../.mpas_sparse_checkout Successfully checked out mpas at v8.4.0 mpas up to date. Sparse checkout cosp2 fxsparse ../.cosp_sparse_checkout Successfully checked out cosp2 at v2.2.1 cosp2 up to date. Sparse checkout ext_co2_cooling fxsparse ../.ext_co2_cooling_sparse_checkout Successfully checked out ext_co2_cooling at v1.1 ext_co2_cooling up to date. chem_proc up to date. carma up to date. pumas-frozen up to date. ali_arms up to date. atmos_phys up to date. Recursively checking out submodules of atmos_phys fv3 up to date. Recursively checking out submodules of fv3 geoschem up to date. Recursively checking out submodules of geoschem cloud_j up to date. hetp up to date. hemco up to date. Recursively checking out submodules of hemco rrtmgp-data up to date. rtm up to date. mosart up to date. fms up to date. Recursively checking out submodules of fms cdeps up to date. Recursively checking out submodules of cdeps share up to date. ccs_config up to date. cmeps up to date. tools/CUPiD up to date. Recursively checking out submodules of tools/CUPiD tuv-x up to date. Recursively checking out submodules of HEMCO parallelio up to date. cice up to date. Recursively checking out submodules of cice Recursively checking out submodules of src mizuRoute up to date. Recursively checking out submodules of mizuRoute clm up to date. Recursively checking out submodules of clm Recursively checking out submodules of fates cime up to date. Recursively checking out submodules of cime Copying ccs_config files Restricting NVHPC OpenACC rules to CLUBB Applying CAM-SIMA Filepath workaround [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Sed Commands) [Pipeline] sh + sed -i 's/DEBUG="TRUE"/DEBUG="FALSE"/g' run_scripts/run_scam.bash [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Remove Old Output) [Pipeline] sh + rm -rf /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80 /home/jenkins/cam_output/scratch/test_scam_ARM97_cam_clubb_error_handling_test_80 [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run test script) [Pipeline] dir Running in /home/jenkins/workspace/cam_clubb_error_handling_test/jenkins_tests/cam_clubb_error_handling_test [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ./cam_test_fatal_error_handling.bash --case-suffix cam_clubb_error_handling_test_80 ----- Case Setup ----- Did not find an alias or longname compset match for 2000_CAM60%SCAMATEX_SLND_SICE_DOCN%AQP3_SROF_SGLC_SWAV Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is Stub land component ICE component is Stub ice component OCN component is DOCN analytic aquaplanet sst - option 3 ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%ne16np4_l%null_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_SLND_SICE_DOCN%AQP3_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: 2000_CAM60%SCAMATEX_SLND_SICE_DOCN%AQP3_SROF_SGLC_SWAV_SESP Grid is: a%ne16np4_l%null_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'slnd', 'sice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3134-g8e7ddbdcd Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80 This component includes user_mods /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80/shell_commands FROM: /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80 Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_error_handling_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_error_handling_test/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_clubb_error_handling_test/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80 sharedlib_only is False model_only is False Generating component namelists as part of build 2026-06-29 21:31:02 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/run/atm_in 2026-06-29 21:31:03 lnd Create namelist for component slnd Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/slnd/cime_config/buildnml 2026-06-29 21:31:03 ice Create namelist for component sice Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sice/cime_config/buildnml 2026-06-29 21:31:03 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/docn/cime_config/buildnml docn_mode is sst_aquap3 2026-06-29 21:31:03 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2026-06-29 21:31:03 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-06-29 21:31:03 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-06-29 21:31:03 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-06-29 21:31:03 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'OCN'] libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/gptl.bldlog.260629-213102 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 2 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/pio.bldlog.260629-213102 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/csm_share.bldlog.260629-213102 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/share/buildlib.csm_share Component csm_share build complete with 28 warnings Build script /home/jenkins/workspace/cam_clubb_error_handling_test/libraries/FTorch/buildlib for component FTorch not found. Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/CDEPS.bldlog.260629-213102 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/cime_config/buildlib - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/atm.bldlog.260629-213102 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/ocn.bldlog.260629-213102 docn built in 0.704313 seconds Component atm build complete with 109 warnings cam built in 184.141597 seconds Building cesm from /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/cesm.bldlog.260629-213102 Total build time: 302.042137 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY Wrote 321 stats entries to /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80/clubb_stats_entries_user_nl.in ----- Run Submission ----- 2026-06-29 21:36:05 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/run/atm_in 2026-06-29 21:36:05 lnd Create namelist for component slnd Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/slnd/cime_config/buildnml 2026-06-29 21:36:05 ice Create namelist for component sice Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sice/cime_config/buildnml 2026-06-29 21:36:05 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/docn/cime_config/buildnml docn_mode is sst_aquap3 2026-06-29 21:36:05 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2026-06-29 21:36:05 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-06-29 21:36:05 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-06-29 21:36:05 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-06-29 21:36:05 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80 2026-06-29 21:36:06 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/run/atm_in 2026-06-29 21:36:06 lnd Create namelist for component slnd Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/slnd/cime_config/buildnml 2026-06-29 21:36:06 ice Create namelist for component sice Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sice/cime_config/buildnml 2026-06-29 21:36:06 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/docn/cime_config/buildnml docn_mode is sst_aquap3 2026-06-29 21:36:06 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2026-06-29 21:36:06 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-06-29 21:36:06 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-06-29 21:36:06 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-06-29 21:36:06 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/run/cesm.log.260629-213606 Submitted job case.run with id None gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/run/cesm.log.*.gz: No such file or directory ----- Case Setup ----- Did not find an alias or longname compset match for 2000_CAM60%SCAMATEX_SLND_SICE_DOCN%AQP3_SROF_SGLC_SWAV Automatically adding SESP to compset Compset forcing is 1972-2004 ATM component is CAM cam6 physics: LND component is Stub land component ICE component is Stub ice component OCN component is DOCN analytic aquaplanet sst - option 3 ROF component is Stub river component GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1969-02-15 Compset specific settings: name is STOP_N and value is 47 Compset specific settings: name is STOP_OPTION and value is nhours Compset specific settings: name is START_TOD and value is 0 Compset specific settings: name is PTS_MODE and value is TRUE Compset specific settings: name is PTS_LAT and value is 15.0 Compset specific settings: name is PTS_LON and value is 345.0 Machine is larson-group vid is comment vid is ntasks vid is nthrds vid is rootpe Pes setting: grid is a%ne16np4_l%null_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx1v7 Pes setting: compset is 2000_CAM60%SCAMATEX_SLND_SICE_DOCN%AQP3_SROF_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 1, 'NTASKS_LND': 1, 'NTASKS_ROF': 1, 'NTASKS_ICE': 1, 'NTASKS_OCN': 1, 'NTASKS_GLC': 1, 'NTASKS_WAV': 1, 'NTASKS_CPL': 1} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: 2000_CAM60%SCAMATEX_SLND_SICE_DOCN%AQP3_SROF_SGLC_SWAV_SESP Grid is: a%ne16np4_l%null_oi%ne16np4_r%null_g%null_w%null_z%null_m%gx1v7 Components in compset are: ['cam', 'slnd', 'sice', 'docn', 'srof', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3134-g8e7ddbdcd Batch_system_type is none Creating Case directory /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80 This component includes user_mods /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/usermods_dirs/scam_mandatory Adding user mods directory /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/usermods_dirs/scam_mandatory RUN: /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80/shell_commands FROM: /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80 Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_clubb_error_handling_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_clubb_error_handling_test/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_clubb_error_handling_test/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Run configuration ----- ----- Compile ----- Building case in directory /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80 sharedlib_only is False model_only is False Generating component namelists as part of build 2026-06-29 21:36:19 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/run/atm_in 2026-06-29 21:36:19 lnd Create namelist for component slnd Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/slnd/cime_config/buildnml 2026-06-29 21:36:19 ice Create namelist for component sice Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sice/cime_config/buildnml 2026-06-29 21:36:19 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/docn/cime_config/buildnml docn_mode is sst_aquap3 2026-06-29 21:36:20 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2026-06-29 21:36:20 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-06-29 21:36:20 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-06-29 21:36:20 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-06-29 21:36:20 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'OCN'] libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS'] Building gptl with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/gptl.bldlog.260629-213619 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 2 warnings Building pio with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/pio.bldlog.260629-213619 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/csm_share.bldlog.260629-213619 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/share/buildlib.csm_share Component csm_share build complete with 28 warnings Build script /home/jenkins/workspace/cam_clubb_error_handling_test/libraries/FTorch/buildlib for component FTorch not found. Building CDEPS with output to file /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/CDEPS.bldlog.260629-213619 Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/cime_config/buildlib - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/atm.bldlog.260629-213619 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/ocn.bldlog.260629-213619 docn built in 0.875638 seconds Component atm build complete with 109 warnings cam built in 172.237053 seconds Building cesm from /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/cesm.bldlog.260629-213619 Total build time: 284.394356 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY Wrote 321 stats entries to /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80/clubb_stats_entries_user_nl.in ----- Run Submission ----- 2026-06-29 21:41:04 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/run/atm_in 2026-06-29 21:41:04 lnd Create namelist for component slnd Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/slnd/cime_config/buildnml 2026-06-29 21:41:04 ice Create namelist for component sice Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sice/cime_config/buildnml 2026-06-29 21:41:04 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/docn/cime_config/buildnml docn_mode is sst_aquap3 2026-06-29 21:41:04 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2026-06-29 21:41:04 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-06-29 21:41:04 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-06-29 21:41:04 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-06-29 21:41:04 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'OCN'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80 2026-06-29 21:41:05 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/workspace/cam_clubb_error_handling_test/cime/scripts/test_scam_ATEX_cam_clubb_error_handling_test_80/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/run/atm_in 2026-06-29 21:41:05 lnd Create namelist for component slnd Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/slnd/cime_config/buildnml 2026-06-29 21:41:05 ice Create namelist for component sice Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sice/cime_config/buildnml 2026-06-29 21:41:05 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cdeps/docn/cime_config/buildnml docn_mode is sst_aquap3 2026-06-29 21:41:06 rof Create namelist for component srof Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/srof/cime_config/buildnml 2026-06-29 21:41:06 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-06-29 21:41:06 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-06-29 21:41:06 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_clubb_error_handling_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-06-29 21:41:06 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_clubb_error_handling_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'OCN'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 1 /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/run/cesm.log.260629-214105 Submitted job case.run with id None gzip: /home/jenkins/cam_output/scratch/test_scam_ATEX_cam_clubb_error_handling_test_80/run/cesm.log.*.gz: No such file or directory [Pipeline] } [Pipeline] // dir [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for wp2 NaN error from advance_wp2_wp3) [Pipeline] script [Pipeline] { [Pipeline] sh Error message 'Error calling advance_wp2_wp3' found in log CAM CLUBB error handling test for advance_wp2_wp3 was SUCCESSFUL [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Check for wp2 NaN error from advance_wm_wpxp) [Pipeline] script [Pipeline] { [Pipeline] sh Error message 'Error calling advance_xm_wpxp' found in log CAM CLUBB error handling test for advance_xm_wpxp was SUCCESSFUL [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS