Started by user Gunther Huebler Obtained jenkins_tests/cam_BFB_coarse_res_r8029_flags_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/cam_BFB_coarse_res_r8029_flags_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_BFB_coarse_res_r8029_flags_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision a5c897e9e384c8bb290f92426bbfd1c3dca3ccaf (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f a5c897e9e384c8bb290f92426bbfd1c3dca3ccaf # timeout=10 Commit message: "Fixing output directory conflicts that occur when scam tests are run at the same time. The fix is adding a --case-suffix option to run_scam.bash, and making jenkins tests set that depending on the job and build number" > git rev-list --no-walk 7499af195b9dca0e159e7b3b67424717e4c7c5ee # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37 + ulimit -s 8388608 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_r8029_flags_gfortran_test_config ERROR: Unknown Job Queue specified use --force to set submit_jobs case.run Submit job case.run No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 ERROR: Unknown Job Queue specified use --force to set submit_jobs case.run Submit job case.run No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 -------- Variable Diff Summary -------- File 1: a5c897e9e384c8bb290f92426bbfd1c3dca3ccaf File 2: becf84ac362381791978e915d39fd44e4a5b8a8e Variables discovered (union): 1594 Variables present in both files: 1594 Variables only in file 1: 0 Variables only in file 2: 0 Variables with differences (all dimensions): 1 Variables identical (all dimensions): 1593 Variables all-zero in file 1 (actual data): 140 Variables all-zero in file 2 (actual data): 140 Variables all-zero in both files (actual data): 140 3D variables tested (PASS/FAIL basis): 575 3D variables with differences: 0 3D variables identical: 575 3D variables all-zero in both files (actual data): 105 Variables skipped for PASS/FAIL (not 3D in either file): 1019 Variables with differences: - time_written | reason=data mismatch | file1: ndim=2, dims=('time', 'chars') | file2: ndim=2, dims=('time', 'chars') PASS: No differences found in 3D variables. =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_r8029_flags_gfortran_test Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_r8029_flags_gfortran_test Using /home/jenkins/workspace/cam_BFB_coarse_res_r8029_flags_gfortran_test with origin https://github.com/larson-group/cam.git Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': - 7499af195b9dca0e159e7b3b67424717e4c7c5ee CheckRange = False: only comparing baseline to final commit. Run Output Path: /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37/run/UWM_debug_r8029_flags_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc Run commands: ['rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37', '\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_r8029_flags_f10_f10_mg37 --reuse_build .', '\nrun_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh'] Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: a5c897e9e384c8bb290f92426bbfd1c3dca3ccaf Checking Commit: a5c897e9e384c8bb290f92426bbfd1c3dca3ccaf Running: final commit to check, not labelled BIT_CHANGING Checking out a5c897e9e384c8bb290f92426bbfd1c3dca3ccaf Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37' Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_r8029_flags_f10_f10_mg37 --reuse_build .' Running: 'run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh' Checking out becf84ac362381791978e915d39fd44e4a5b8a8e Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37' Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_r8029_flags_f10_f10_mg37 --reuse_build .' Running: 'run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh' Diffing: 'python3 run_scripts/netcdf_3D_vars_diff.py a5c897e9e384c8bb290f92426bbfd1c3dca3ccaf becf84ac362381791978e915d39fd44e4a5b8a8e' =============================== Test Results =============================== Commit Range Checked = becf84ac362381791978e915d39fd44e4a5b8a8e...a5c897e9e384c8bb290f92426bbfd1c3dca3ccaf -- CheckRange was set to False, no intermediate commits checked No new Unresolved commits found. No fake BIT_CHANGING commits found. Remaining Unresolved Commits (oldest commit is listed first): 7499af195b9dca0e159e7b3b67424717e4c7c5ee =============================== Updating Config File =============================== Saving into UnresolvedCommits: 7499af195b9dca0e159e7b3b67424717e4c7c5ee Saving into BaselineCommit: a5c897e9e384c8bb290f92426bbfd1c3dca3ccaf =============================== Cleanup =============================== Removing all generated output REMOVING: becf84ac362381791978e915d39fd44e4a5b8a8e REMOVING: a5c897e9e384c8bb290f92426bbfd1c3dca3ccaf ================== Unresolved Commit Status ================== Remaining Unresolved Commits (oldest commit is listed first): 7499af195b9dca0e159e7b3b67424717e4c7c5ee Exiting with code: 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE