Console Output

Started by user Gunther Huebler
Obtained jenkins_tests/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
 > git rev-parse --resolve-git-dir /home/jenkins/workspace/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
Checking out Revision a9cbe307c5d265f0b893ea01a871c98fe19289a4 (refs/remotes/origin/clubb_silhs_devel)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f a9cbe307c5d265f0b893ea01a871c98fe19289a4 # timeout=10
Commit message: "Adding stack size change to jenkins files, this might fix the bin_diff tests."
 > git rev-list --no-walk 151588e72d1a3ae9978649953cce44215c4b57a4 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Clone SysAdmin to tmp)
[Pipeline] sh
+ rm -rf /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin
+ git clone https://github.com/larson-group/sys_admin.git /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin
Cloning into '/home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin'...
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run Python Test)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37
+ ulimit -s 8388608
+ python3 /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/bit_diff_cam_r8029_config
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/cam_r8029_flags_bit_diff_test_workspace
Trying to clone repo...

Cloned repo location: /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/repo

Output Save Mode: none

Using branch: clubb_silhs_devel

Making list from 'UnresolvedCommits':

Run Output Path: /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu/run/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu.cam.rh0.0001-01-02-00000.nc

Run commands: ['rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37', '\nrepo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build repo', '\nrepo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh']

Diffing command: python3 repo/run_scripts/netcdf_3D_vars_diff.py

=============================== Running Test ===============================

Parsing message from commit: 047ebbfcf32e597686453e21e51ec18f3dc256ae
Parsing message from commit: 151588e72d1a3ae9978649953cce44215c4b57a4
Parsing message from commit: a9cbe307c5d265f0b893ea01a871c98fe19289a4

Checking Commit: 047ebbfcf32e597686453e21e51ec18f3dc256ae
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 151588e72d1a3ae9978649953cce44215c4b57a4
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: a9cbe307c5d265f0b893ea01a871c98fe19289a4
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out a9cbe307c5d265f0b893ea01a871c98fe19289a4
	Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37'
	Running: '
repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build repo'
	Running: '
repo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh'

================== WARNING ==================
Commit:  a9cbe307c5d265f0b893ea01a871c98fe19289a4

There was a problem copying the output.
Did the run complete?
Is the output path correct? /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu/run/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu.cam.rh0.0001-01-02-00000.nc

The run will continue, and this commit will be
considered unresolved.
===========================================
	Checking out 1d86f1d2b130402eb89bf690b5adbb73b6d65466
	Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37'
	Running: '
repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build repo'
	Running: '
repo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh'

================== WARNING ==================
Commit:  1d86f1d2b130402eb89bf690b5adbb73b6d65466

There was a problem copying the output.
Did the run complete?
Is the output path correct? /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu/run/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu.cam.rh0.0001-01-02-00000.nc

The run will continue, and this commit will be
considered unresolved.
===========================================
	ISSUE WITH COMMIT DETECTED: a9cbe307c5d265f0b893ea01a871c98fe19289a4 differs from 1d86f1d2b130402eb89bf690b5adbb73b6d65466

Finding all BIT_CHANGING commits in range: 1d86f1d2b130402eb89bf690b5adbb73b6d65466...a9cbe307c5d265f0b893ea01a871c98fe19289a4
	Checking out 047ebbfcf32e597686453e21e51ec18f3dc256ae
	Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37'
	Running: '
repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build repo'
	Running: '
repo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh'

================== WARNING ==================
Commit:  047ebbfcf32e597686453e21e51ec18f3dc256ae

There was a problem copying the output.
Did the run complete?
Is the output path correct? /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu/run/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu.cam.rh0.0001-01-02-00000.nc

The run will continue, and this commit will be
considered unresolved.
===========================================
	Commit 1d86f1d2b130402eb89bf690b5adbb73b6d65466 already failed. Will not run again
	Checking out 151588e72d1a3ae9978649953cce44215c4b57a4
	Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37'
	Running: '
repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build repo'
	Running: '
repo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh'

================== WARNING ==================
Commit:  151588e72d1a3ae9978649953cce44215c4b57a4

There was a problem copying the output.
Did the run complete?
Is the output path correct? /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu/run/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu.cam.rh0.0001-01-02-00000.nc

The run will continue, and this commit will be
considered unresolved.
===========================================
	Commit 047ebbfcf32e597686453e21e51ec18f3dc256ae already failed. Will not run again
	Commit a9cbe307c5d265f0b893ea01a871c98fe19289a4 already failed. Will not run again
	Commit 151588e72d1a3ae9978649953cce44215c4b57a4 already failed. Will not run again
	Found:
		047ebbfcf32e597686453e21e51ec18f3dc256ae
		151588e72d1a3ae9978649953cce44215c4b57a4
		a9cbe307c5d265f0b893ea01a871c98fe19289a4

=============================== Test Results ===============================

Commit Range Checked = 1d86f1d2b130402eb89bf690b5adbb73b6d65466...a9cbe307c5d265f0b893ea01a871c98fe19289a4

New Unresolved Commits:
	047ebbfcf32e597686453e21e51ec18f3dc256ae
	151588e72d1a3ae9978649953cce44215c4b57a4
	a9cbe307c5d265f0b893ea01a871c98fe19289a4

No fake BIT_CHANGING commits found.

Remaining Unresolved Commits (oldest commit is listed first):
	047ebbfcf32e597686453e21e51ec18f3dc256ae
	151588e72d1a3ae9978649953cce44215c4b57a4
	a9cbe307c5d265f0b893ea01a871c98fe19289a4

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 047ebbfcf32e597686453e21e51ec18f3dc256ae
151588e72d1a3ae9978649953cce44215c4b57a4
a9cbe307c5d265f0b893ea01a871c98fe19289a4

Ignoring a9cbe307c5d265f0b893ea01a871c98fe19289a4 since it failed to produce output.
Ignoring 151588e72d1a3ae9978649953cce44215c4b57a4 since it failed to produce output.
Ignoring 047ebbfcf32e597686453e21e51ec18f3dc256ae since it failed to produce output.

=============================== Cleanup ===============================

Removed repo.

Removing all generated output

================== Unresolved Commit Status ==================

Remaining Unresolved Commits (oldest commit is listed first):
	047ebbfcf32e597686453e21e51ec18f3dc256ae
	151588e72d1a3ae9978649953cce44215c4b57a4
	a9cbe307c5d265f0b893ea01a871c98fe19289a4

================== FAILED Commits ==================

These are the commits which entirely failed to produce output: 
	a9cbe307c5d265f0b893ea01a871c98fe19289a4
	1d86f1d2b130402eb89bf690b5adbb73b6d65466
	047ebbfcf32e597686453e21e51ec18f3dc256ae
	151588e72d1a3ae9978649953cce44215c4b57a4

Exiting with code: 1
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output
[Pipeline] }
[Pipeline] // script
[Pipeline] script
[Pipeline] {
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE