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Started by an SCM change Obtained jenkins_tests/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision 0df34e02ef1da89d9c0d413f6c5a48decad55564 (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f 0df34e02ef1da89d9c0d413f6c5a48decad55564 # timeout=10 Commit message: "Autoupdated SILHS Commit 8bbf5db087f49e4d6a4a1aaef2b825b3716276f8 Author: Gunther Huebler Date: Wed Sep 25 14:42:58 2024 -0500 Removing the target attributes wherever possible. These are artifacts from when gr and the the stats types were globals, and got naively copied when these were pushed through the call stack." > git rev-list --no-walk 8cc633ec5c668b87b76afb3cbedac29732fdcc9d # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin Cloning into '/home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37 + python3 /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/bit_diff_cam_r8029_config =============================== Configuring Test =============================== Working directory set to: /home/jenkins/cam_r8029_flags_bit_diff_test_workspace Trying to clone repo... Cloned repo location: /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/repo Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': Run Output Path: /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu/run/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu.cam.rh0.0001-01-02-00000.nc Run commands: ['rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37', '\nrepo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build repo', '\nrepo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh'] Diffing command: python3 repo/run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: 44185129c9d82fc7c19c5c28d3b2da9f5b13953b Parsing message from commit: f91e6aab06416ab175dd76caed4107fd7b3fc47a Parsing message from commit: 0df34e02ef1da89d9c0d413f6c5a48decad55564 Checking Commit: 44185129c9d82fc7c19c5c28d3b2da9f5b13953b Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: f91e6aab06416ab175dd76caed4107fd7b3fc47a Skipping: not final commit and not labelled BIT_CHANGING Checking Commit: 0df34e02ef1da89d9c0d413f6c5a48decad55564 Running: final commit to check, not labelled BIT_CHANGING Checking out 0df34e02ef1da89d9c0d413f6c5a48decad55564 Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37' Running: ' repo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build repo' ================== ERROR ================== Commit: 0df34e02ef1da89d9c0d413f6c5a48decad55564 Unexpected error: [Errno 2] No such file or directory: 'repo/run_scripts/set_up_cam_coarse_res.py' There was a problem with a run command. =========================================== System Exit detected. Calling test.cleanup() =============================== Cleanup =============================== Removed repo. Removing all generated output Exiting with code: 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE