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Started by an SCM change
Obtained jenkins_tests/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git
[Pipeline] Start of Pipeline
[Pipeline] node
Still waiting to schedule task
Waiting for next available executor on ‘Jenkins’
Running on Jenkins in /home/jenkins/workspace/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
 > git rev-parse --resolve-git-dir /home/jenkins/workspace/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
Checking out Revision 8bc0147fc58f2448bb1888ac4623e2f7c88c401a (refs/remotes/origin/clubb_silhs_devel)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 8bc0147fc58f2448bb1888ac4623e2f7c88c401a # timeout=10
Commit message: "Autoupdated CLUBB_core Commit acfdc3cd0d3a13e8db27fcd0edcb7bbcf7d05189 Author: domkesteffen Date: Thu Sep 19 16:49:00 2024 -0500 Ri zm calc6 (#1177) * Ri_zm calc (Part 6) - Implementing calc_Ri_zm CLUBB tocket #1145"
 > git rev-list --no-walk 44aa887b794c63c4ec3255de28e3c6d11e0c9349 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Clone SysAdmin to tmp)
[Pipeline] sh
+ rm -rf /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin
+ git clone https://github.com/larson-group/sys_admin.git /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin
Cloning into '/home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin'...
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run Python Test)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37
+ python3 /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/bit_diff_cam_r8029_config
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0
ERROR: Unknown Job Queue specified use --force to set
Error: Symbol 'edsclr' at (1) already has basic type of INTEGER

ERROR: BUILD FAIL: cam.buildlib failed, cat /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37/bld/atm.bldlog.240920-043028
Error building CAM
 vars are zero.

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/cam_r8029_flags_bit_diff_test_workspace
Trying to clone repo...

Cloned repo location: /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/repo

Output Save Mode: none

Using branch: clubb_silhs_devel

Making list from 'UnresolvedCommits':

Run Output Path: /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu/run/UWM_debug_r8029_flags_f10_f10_mg37_larson-group_gnu.cam.rh0.0001-01-02-00000.nc

Run commands: ['rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37', '\nrepo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build repo', '\nrepo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh']

Diffing command: python3 repo/run_scripts/netcdf_3D_vars_diff.py

=============================== Running Test ===============================

Parsing message from commit: db04935ec785e30557e206bdf35d06d6d4f3b8e1
Parsing message from commit: 9e0b9d08d8391b8b9bdc8f663a5a20af3f07a97b
Parsing message from commit: 8bc0147fc58f2448bb1888ac4623e2f7c88c401a

Checking Commit: db04935ec785e30557e206bdf35d06d6d4f3b8e1
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 9e0b9d08d8391b8b9bdc8f663a5a20af3f07a97b
	Skipping: not final commit and not labelled BIT_CHANGING

Checking Commit: 8bc0147fc58f2448bb1888ac4623e2f7c88c401a
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out 8bc0147fc58f2448bb1888ac4623e2f7c88c401a
	Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37'
	Running: '
repo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build repo'
	Running: '
repo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh'
	Checking out 44aa887b794c63c4ec3255de28e3c6d11e0c9349
	Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37'
	Running: '
repo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build repo'
	Running: '
repo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh'
	Diffing: 'python3 repo/run_scripts/netcdf_3D_vars_diff.py 8bc0147fc58f2448bb1888ac4623e2f7c88c401a 44aa887b794c63c4ec3255de28e3c6d11e0c9349'

=============================== Test Results ===============================

Commit Range Checked = 44aa887b794c63c4ec3255de28e3c6d11e0c9349...8bc0147fc58f2448bb1888ac4623e2f7c88c401a

No new Unresolved commits found.

No fake BIT_CHANGING commits found.

No remaining Unresolved Commits.

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 

Saving into BaselineCommit: 8bc0147fc58f2448bb1888ac4623e2f7c88c401a

=============================== Cleanup ===============================

Removed repo.

Removing all generated output
	REMOVING: 44aa887b794c63c4ec3255de28e3c6d11e0c9349
	REMOVING: 8bc0147fc58f2448bb1888ac4623e2f7c88c401a

================== Unresolved Commit Status ==================

No remaining Unresolved Commits.

Exiting with code: 0
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS