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Obtained jenkins_tests/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
 > git rev-parse --resolve-git-dir /home/jenkins/workspace/cam_coarse_res_r8029_flags_bin_diff_regression_gfortran_test/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10
Fetching upstream changes from https://github.com/larson-group/cam.git
 > git --version # timeout=10
 > git --version # 'git version 2.34.1'
using GIT_ASKPASS to set credentials A token based key used by Jenkins to preform Github actions, created 6/21/2021
 > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10
Checking out Revision 8ec5b1797b34ec4da71673e6244550b5cd84f5d0 (refs/remotes/origin/clubb_silhs_devel)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 8ec5b1797b34ec4da71673e6244550b5cd84f5d0 # timeout=10
Commit message: "The module loading is handled by the ccs_config code, so we don't need module commands in jenkinsfiles. Also loading intel-oneapi-mkl for intel builds."
 > git rev-list --no-walk 47ed9fe3c8d7a548784fd6806a86a16f04345f9d # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Clone SysAdmin to tmp)
[Pipeline] sh
+ rm -rf /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin
+ git clone https://github.com/larson-group/sys_admin.git /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin
Cloning into '/home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin'...
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run Python Test)
[Pipeline] sh
+ source /etc/profile.d/larson-group.sh
++ export PATH MANPATH LD_LIBRARY_PATH
++ export SVNROOT=http://carson.math.uwm.edu/repos
++ SVNROOT=http://carson.math.uwm.edu/repos
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju
++ LMOD_ROOT=/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju
++ source /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37
+ python3 /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/bit_diff_cam_r8029_config
ERROR: No machine nelson found
Error creating new case
all last):
  File "/home/jenkins/cam_r8029_flags_bit_diff_test_workspace/repo/run_scripts/set_up_cam_coarse_res.py", line 78, in <module>
    os.mkdir("ccs_config/machines/larson-group")
FileExistsError: [Errno 17] File exists: 'ccs_config/machines/larson-group'
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False 
mach larson-group 
resubmit_num 0

=============================== Configuring Test ===============================


Working directory set to: /home/jenkins/cam_r8029_flags_bit_diff_test_workspace
Trying to clone repo...

Cloned repo location: /home/jenkins/cam_r8029_flags_bit_diff_test_workspace/repo

Output Save Mode: none

Using branch: clubb_silhs_devel

Making list from 'UnresolvedCommits':

Run Output Path: /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37/run/UWM_debug_r8029_flags_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc

Run commands: ['rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37', '\nrepo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --mach nelson repo', '\nrepo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh']

Diffing command: python3 repo/run_scripts/netcdf_3D_vars_diff.py

=============================== Running Test ===============================

Parsing message from commit: 8ec5b1797b34ec4da71673e6244550b5cd84f5d0

Checking Commit: 8ec5b1797b34ec4da71673e6244550b5cd84f5d0
	Running: final commit to check, not labelled BIT_CHANGING
	Checking out 8ec5b1797b34ec4da71673e6244550b5cd84f5d0
	Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37'
	Running: '
repo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --mach nelson repo'
	Running: '
repo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh'

================== WARNING ==================
Commit:  8ec5b1797b34ec4da71673e6244550b5cd84f5d0

There was a problem copying the output.
Did the run complete?
Is the output path correct? /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37/run/UWM_debug_r8029_flags_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc

The run will continue, and this commit will be
considered unresolved.
===========================================
	Checking out 47ed9fe3c8d7a548784fd6806a86a16f04345f9d
	Running: 'rm -rf /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37'
	Running: '
repo/run_scripts/set_up_cam_coarse_res.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --mach nelson repo'
	Running: '
repo/run_scripts/run_cesm_uwm_coarse_res_r8029_flags.sh'

================== WARNING ==================
Commit:  47ed9fe3c8d7a548784fd6806a86a16f04345f9d

There was a problem copying the output.
Did the run complete?
Is the output path correct? /home/jenkins/cam_output/scratch/UWM_debug_r8029_flags_f10_f10_mg37/run/UWM_debug_r8029_flags_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc

The run will continue, and this commit will be
considered unresolved.
===========================================
	ISSUE WITH COMMIT DETECTED: 8ec5b1797b34ec4da71673e6244550b5cd84f5d0 differs from 47ed9fe3c8d7a548784fd6806a86a16f04345f9d

Finding all BIT_CHANGING commits in range: 47ed9fe3c8d7a548784fd6806a86a16f04345f9d...8ec5b1797b34ec4da71673e6244550b5cd84f5d0
	Commit 8ec5b1797b34ec4da71673e6244550b5cd84f5d0 already failed. Will not run again
	Commit 47ed9fe3c8d7a548784fd6806a86a16f04345f9d already failed. Will not run again
	Found:
		8ec5b1797b34ec4da71673e6244550b5cd84f5d0

=============================== Test Results ===============================

Commit Range Checked = 47ed9fe3c8d7a548784fd6806a86a16f04345f9d...8ec5b1797b34ec4da71673e6244550b5cd84f5d0

New Unresolved Commits:
	8ec5b1797b34ec4da71673e6244550b5cd84f5d0

No fake BIT_CHANGING commits found.

Remaining Unresolved Commits (oldest commit is listed first):
	8ec5b1797b34ec4da71673e6244550b5cd84f5d0

=============================== Updating Config File ===============================


Saving into UnresolvedCommits: 8ec5b1797b34ec4da71673e6244550b5cd84f5d0

Ignoring 8ec5b1797b34ec4da71673e6244550b5cd84f5d0 since it failed to produce output.

=============================== Cleanup ===============================

Removed repo.

Removing all generated output

================== Unresolved Commit Status ==================

Remaining Unresolved Commits (oldest commit is listed first):
	8ec5b1797b34ec4da71673e6244550b5cd84f5d0

================== FAILED Commits ==================

These are the commits which entirely failed to produce output: 
	8ec5b1797b34ec4da71673e6244550b5cd84f5d0
	47ed9fe3c8d7a548784fd6806a86a16f04345f9d

Exiting with code: 1
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] script
[Pipeline] {
[Pipeline] sh
+ chmod -R 755 /home/jenkins/cam_output
[Pipeline] }
[Pipeline] // script
[Pipeline] script
[Pipeline] {
[Pipeline] }
[Pipeline] // script
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 1
Finished: FAILURE