Started by an SCM change Obtained jenkins_tests/cam_BFB_coarse_res_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on overlie in /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.43.0' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 1eca30798f2886be7d8594c8826320737b7a76cd (refs/remotes/origin/clubb_silhs_devel) Commit message: "Autoupdated CLUBB_core Commit a8c952996409f8c94d6a28714171145ed7d2c2ae Author: Daniel Ebel Date: Tue Oct 13 12:10:00 2026 -0500 Fixed bug in cubic equation solve function. Only relevant if pdf is L… (#1387) * Fixed bug in cubic equation solve function. Only relevant if pdf is Luhar or iiPDF_type=4" > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 1eca30798f2886be7d8594c8826320737b7a76cd # timeout=10 > git rev-list --no-walk 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (MTso BFB Check) [Pipeline] catchError [Pipeline] { [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ulimit -s 8388608 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_gfortran_test_config Checking out externals... Sparse checkout cam-sima fxsparse ../.sima_phys_utils_sparse_checkout Successfully checked out cam-sima at sima0_07_000 cam-sima up to date. Sparse checkout mpas fxsparse ../.mpas_sparse_checkout Successfully checked out mpas at v8.4.0 mpas up to date. Sparse checkout cosp2 fxsparse ../.cosp_sparse_checkout Successfully checked out cosp2 at v2.2.1 cosp2 up to date. Sparse checkout ext_co2_cooling fxsparse ../.ext_co2_cooling_sparse_checkout Successfully checked out ext_co2_cooling at v1.1 ext_co2_cooling up to date. chem_proc up to date. carma up to date. pumas-frozen up to date. ali_arms up to date. atmos_phys up to date. Recursively checking out submodules of atmos_phys fv3 up to date. Recursively checking out submodules of fv3 cloud_j up to date. hetp up to date. hemco up to date. Recursively checking out submodules of hemco rrtmgp-data up to date. rtm up to date. mosart up to date. ccs_config up to date. fms up to date. Recursively checking out submodules of fms share up to date. cdeps up to date. Recursively checking out submodules of cdeps tools/CUPiD up to date. Recursively checking out submodules of tools/CUPiD cmeps up to date. tuv-x up to date. mizuRoute up to date. Recursively checking out submodules of mizuRoute parallelio up to date. Recursively checking out submodules of HEMCO cice up to date. Recursively checking out submodules of cice geoschem up to date. Recursively checking out submodules of geoschem Recursively checking out submodules of src clm up to date. Recursively checking out submodules of clm cime up to date. Recursively checking out submodules of cime Recursively checking out submodules of fates Copying ccs_config files Restricting NVHPC OpenACC rules to CLUBB Applying CAM-SIMA Filepath workaround ----- Case Setup ----- Compset longname is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is Historic transient ATM component is CAM cam7 physics:CAM mid top model LND component is clm6.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1979-01-01 Compset specific settings: name is LND_SETS_DUST_EMIS_DRV_FLDS and value is FALSE Machine is larson-group Pes setting: grid match is a%ne3np4 Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3204-g1eca30798 Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Compile ----- Building case in directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu sharedlib_only is False model_only is False Generating component namelists as part of build 2026-10-14 03:30:32 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-14 03:30:32 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-14 03:30:33 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-14 03:30:33 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-14 03:30:33 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-14 03:30:33 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-14 03:30:33 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-14 03:30:33 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-14 03:30:33 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS'] Building gptl with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/gptl.bldlog.261014-033031 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/pio.bldlog.261014-033031 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/csm_share.bldlog.261014-033031 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/share/buildlib.csm_share Component csm_share build complete with 214 warnings Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found. Building CDEPS with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/CDEPS.bldlog.261014-033031 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/lnd.bldlog.261014-033031 Component lnd build complete with 2472 warnings clm built in 752.386588 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/atm.bldlog.261014-033031 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ice.bldlog.261014-033031 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ocn.bldlog.261014-033031 - Building rof Library Building rof with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/rof.bldlog.261014-033031 docn built in 1.148330 seconds Component rof build complete with 145 warnings mosart built in 17.174893 seconds Component ice build complete with 502 warnings cice built in 689.894311 seconds Component atm build complete with 6141 warnings cam built in 1455.460035 seconds Building cesm from /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.bldlog.261014-033031 Component cesm exe build complete with 54 warnings Total build time: 2527.598061 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run configuration ----- Wrote 321 stats entries to /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/clubb_stats_entries_user_nl.in ----- Run Submission ----- 2026-10-14 04:12:44 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-14 04:12:45 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-14 04:12:46 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-14 04:12:46 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-14 04:12:46 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-14 04:12:46 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-14 04:12:46 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-14 04:12:46 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-14 04:12:46 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/ctsm.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/mosart.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu 2026-10-14 04:12:48 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-14 04:12:49 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-14 04:12:49 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-14 04:12:50 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-14 04:12:50 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-14 04:12:50 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-14 04:12:50 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-14 04:12:50 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-14 04:12:50 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 4 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 4 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/cesm.log.261014-041248 Submitted job case.run with id None Success! Checking out externals... chem_proc up to date. carma up to date. pumas-frozen up to date. ali_arms up to date. atmos_phys up to date. Recursively checking out submodules of atmos_phys Sparse checkout cam-sima fxsparse ../.sima_phys_utils_sparse_checkout cam-sima up to date. fv3 up to date. Recursively checking out submodules of fv3 geoschem up to date. Recursively checking out submodules of geoschem cloud_j up to date. hetp up to date. hemco up to date. Recursively checking out submodules of hemco rrtmgp-data up to date. Sparse checkout mpas fxsparse ../.mpas_sparse_checkout mpas up to date. Sparse checkout cosp2 fxsparse ../.cosp_sparse_checkout cosp2 up to date. Sparse checkout ext_co2_cooling fxsparse ../.ext_co2_cooling_sparse_checkout ext_co2_cooling up to date. rtm up to date. mosart up to date. mizuRoute up to date. Recursively checking out submodules of mizuRoute ccs_config has modified files: ['machines/Depends.nvhpc', 'machines/config_machines.xml'] cime up to date. Recursively checking out submodules of cime cmeps has modified files: ['cime_config/config_component.xml'] cdeps up to date. Recursively checking out submodules of cdeps share up to date. parallelio up to date. cice up to date. Recursively checking out submodules of cice clm up to date. Recursively checking out submodules of clm fms up to date. Recursively checking out submodules of fms tools/CUPiD up to date. Recursively checking out submodules of tools/CUPiD tuv-x up to date. Recursively checking out submodules of HEMCO Recursively checking out submodules of src Recursively checking out submodules of fates Copying ccs_config files Restricting NVHPC OpenACC rules to CLUBB Applying CAM-SIMA Filepath workaround Removing old code directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu in 10 seconds. To abort, press ctrl-c ----- Case Setup ----- Compset longname is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is Historic transient ATM component is CAM cam7 physics:CAM mid top model LND component is clm6.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1979-01-01 Compset specific settings: name is LND_SETS_DUST_EMIS_DRV_FLDS and value is FALSE Machine is larson-group Pes setting: grid match is a%ne3np4 Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: HIST_CAM70%MT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3202-g6fda8e144 Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Compile ----- Building case in directory /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu sharedlib_only is False model_only is False Generating component namelists as part of build 2026-10-14 04:13:23 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-14 04:13:23 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-14 04:13:24 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-14 04:13:24 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-14 04:13:24 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-14 04:13:24 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-14 04:13:24 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-14 04:13:24 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-14 04:13:24 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS'] Building gptl with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/gptl.bldlog.261014-041322 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.gptl Building pio with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/pio.bldlog.261014-041322 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/csm_share.bldlog.261014-041322 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/share/buildlib.csm_share Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found. Building CDEPS with output to file /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/CDEPS.bldlog.261014-041322 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/lnd.bldlog.261014-041322 clm built in 1.698498 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/atm.bldlog.261014-041322 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ice.bldlog.261014-041322 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ocn.bldlog.261014-041322 - Building rof Library Building rof with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/rof.bldlog.261014-041322 docn built in 1.097540 seconds mosart built in 1.393540 seconds cice built in 1.492408 seconds cam built in 4.699650 seconds Building cesm from /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.bldlog.261014-041322 Component cesm exe build complete with 11 warnings Total build time: 39.722533 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run configuration ----- Wrote 321 stats entries to /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/clubb_stats_entries_user_nl.in ----- Run Submission ----- 2026-10-14 04:14:08 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-14 04:14:09 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-14 04:14:09 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-14 04:14:10 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-14 04:14:10 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-14 04:14:10 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-14 04:14:10 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-14 04:14:10 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-14 04:14:10 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/ctsm.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/mosart.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu 2026-10-14 04:14:12 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-14 04:14:13 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-14 04:14:13 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-14 04:14:14 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-14 04:14:14 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-14 04:14:14 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-14 04:14:14 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-14 04:14:14 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-14 04:14:14 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 4 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 4 /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/cesm.log.261014-041411 Submitted job case.run with id None Success! =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Using /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test with origin https://github.com/larson-group/cam.git Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': CheckRange = False: only comparing baseline to final commit. Run Output Path: /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc Run commands: ['rm -f /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc &&\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build . &&\nsed -i -e \'s/^CASE=.*/CASE="UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37"/\' -e \'s/^COMPSET=.*/COMPSET="FHISTC_MTso"/\' -e \'s/ -silhs / /g\' -e \'s/ -psubcols \\$NUMSC//g\' -e \'s/ -DSILHS//g\' -e "s/^subcol_scheme = .*/subcol_scheme = \'off\'/" -e \'s/^use_subcol_microp = .*/use_subcol_microp = .false./\' -e \'s/^microp_uniform = .*/microp_uniform = .false./\' -e "s/, \'SILHS_CLUBB_PRECIP_FRAC\',//" -e "/^\'SILHS_CLUBB_ICE_SS_FRAC\'/d" run_scripts/run_cesm_uwm_coarse_res.sh &&\nrun_scripts/run_cesm_uwm_coarse_res.sh'] Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: 1eca30798f2886be7d8594c8826320737b7a76cd Found: BIT_CHANGING Checking Commit: 1eca30798f2886be7d8594c8826320737b7a76cd Checking out 1eca30798f2886be7d8594c8826320737b7a76cd Running: 'rm -f /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc && run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build . && sed -i -e 's/^CASE=.*/CASE="UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37"/' -e 's/^COMPSET=.*/COMPSET="FHISTC_MTso"/' -e 's/ -silhs / /g' -e 's/ -psubcols \$NUMSC//g' -e 's/ -DSILHS//g' -e "s/^subcol_scheme = .*/subcol_scheme = 'off'/" -e 's/^use_subcol_microp = .*/use_subcol_microp = .false./' -e 's/^microp_uniform = .*/microp_uniform = .false./' -e "s/, 'SILHS_CLUBB_PRECIP_FRAC',//" -e "/^'SILHS_CLUBB_ICE_SS_FRAC'/d" run_scripts/run_cesm_uwm_coarse_res.sh && run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: 1eca30798f2886be7d8594c8826320737b7a76cd There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Checking out 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 Running: 'rm -f /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc && run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build . && sed -i -e 's/^CASE=.*/CASE="UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37"/' -e 's/^COMPSET=.*/COMPSET="FHISTC_MTso"/' -e 's/ -silhs / /g' -e 's/ -psubcols \$NUMSC//g' -e 's/ -DSILHS//g' -e "s/^subcol_scheme = .*/subcol_scheme = 'off'/" -e 's/^use_subcol_microp = .*/use_subcol_microp = .false./' -e 's/^microp_uniform = .*/microp_uniform = .false./' -e "s/, 'SILHS_CLUBB_PRECIP_FRAC',//" -e "/^'SILHS_CLUBB_ICE_SS_FRAC'/d" run_scripts/run_cesm_uwm_coarse_res.sh && run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Commit '1eca30798f2886be7d8594c8826320737b7a76cd' is BIT_CHANGING and properly labelled as such. =============================== Test Results =============================== Commit Range Checked = 6fda8e14438857fdf16e8afb5b32a52302cfd2e9...1eca30798f2886be7d8594c8826320737b7a76cd -- CheckRange was set to False, no intermediate commits checked New Unresolved Commits: 1eca30798f2886be7d8594c8826320737b7a76cd No fake BIT_CHANGING commits found. Resolved: 1eca30798f2886be7d8594c8826320737b7a76cd No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Ignoring 1eca30798f2886be7d8594c8826320737b7a76cd since it failed to produce output. =============================== Cleanup =============================== Removing all generated output ================== Unresolved Commit Status ================== No remaining Unresolved Commits. ================== FAILED Commits ================== These are the commits which entirely failed to produce output: 1eca30798f2886be7d8594c8826320737b7a76cd 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 Exiting with code: 0 [Pipeline] } [Pipeline] // catchError [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (LTso + SILHS BFB Check) [Pipeline] catchError [Pipeline] { [Pipeline] deleteDir [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.43.0' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision 1eca30798f2886be7d8594c8826320737b7a76cd (refs/remotes/origin/clubb_silhs_devel) Commit message: "Autoupdated CLUBB_core Commit a8c952996409f8c94d6a28714171145ed7d2c2ae Author: Daniel Ebel Date: Tue Oct 13 12:10:00 2026 -0500 Fixed bug in cubic equation solve function. Only relevant if pdf is L… (#1387) * Fixed bug in cubic equation solve function. Only relevant if pdf is Luhar or iiPDF_type=4" [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ulimit -s 8388608 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_gfortran_LTso_SILHS_test_config > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 1eca30798f2886be7d8594c8826320737b7a76cd # timeout=10 Checking out externals... Sparse checkout cam-sima fxsparse ../.sima_phys_utils_sparse_checkout Successfully checked out cam-sima at sima0_07_000 cam-sima up to date. Sparse checkout mpas fxsparse ../.mpas_sparse_checkout Successfully checked out mpas at v8.4.0 mpas up to date. Sparse checkout cosp2 fxsparse ../.cosp_sparse_checkout Successfully checked out cosp2 at v2.2.1 cosp2 up to date. Sparse checkout ext_co2_cooling fxsparse ../.ext_co2_cooling_sparse_checkout Successfully checked out ext_co2_cooling at v1.1 ext_co2_cooling up to date. chem_proc up to date. carma up to date. pumas-frozen up to date. ali_arms up to date. atmos_phys up to date. Recursively checking out submodules of atmos_phys fv3 up to date. Recursively checking out submodules of fv3 cloud_j up to date. hetp up to date. hemco up to date. Recursively checking out submodules of hemco rrtmgp-data up to date. rtm up to date. mosart up to date. ccs_config up to date. fms up to date. Recursively checking out submodules of fms share up to date. cdeps up to date. Recursively checking out submodules of cdeps tools/CUPiD up to date. Recursively checking out submodules of tools/CUPiD cmeps up to date. mizuRoute up to date. Recursively checking out submodules of mizuRoute geoschem up to date. Recursively checking out submodules of geoschem tuv-x up to date. parallelio up to date. Recursively checking out submodules of HEMCO cice up to date. Recursively checking out submodules of cice Recursively checking out submodules of src clm up to date. Recursively checking out submodules of clm cime up to date. Recursively checking out submodules of cime Recursively checking out submodules of fates Copying ccs_config files Restricting NVHPC OpenACC rules to CLUBB Applying CAM-SIMA Filepath workaround ----- Case Setup ----- Compset longname is HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is Historic transient ATM component is CAM cam7 physics:CAM low top model LND component is clm6.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1979-01-01 Compset specific settings: name is LND_SETS_DUST_EMIS_DRV_FLDS and value is FALSE Machine is larson-group Pes setting: grid match is a%ne3np4 Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3204-g1eca30798 Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Compile ----- Building case in directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu sharedlib_only is False model_only is False Generating component namelists as part of build 2026-10-14 04:16:08 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-14 04:16:09 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-14 04:16:09 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-14 04:16:09 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-14 04:16:10 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-14 04:16:10 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-14 04:16:10 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-14 04:16:10 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-14 04:16:10 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS'] Building gptl with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/gptl.bldlog.261014-041607 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.gptl Component gptl build complete with 21 warnings Building pio with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/pio.bldlog.261014-041607 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/csm_share.bldlog.261014-041607 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/share/buildlib.csm_share Component csm_share build complete with 214 warnings Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found. Building CDEPS with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/CDEPS.bldlog.261014-041607 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/cime_config/buildlib Component CDEPS build complete with 176 warnings - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/lnd.bldlog.261014-041607 Component lnd build complete with 2472 warnings clm built in 513.436049 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/atm.bldlog.261014-041607 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ice.bldlog.261014-041607 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ocn.bldlog.261014-041607 - Building rof Library Building rof with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/rof.bldlog.261014-041607 docn built in 1.093553 seconds Component rof build complete with 145 warnings mosart built in 16.816285 seconds Component ice build complete with 502 warnings cice built in 625.934806 seconds Component atm build complete with 6142 warnings cam built in 1584.922601 seconds Building cesm from /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.bldlog.261014-041607 Component cesm exe build complete with 54 warnings Total build time: 2721.548964 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run configuration ----- Wrote 321 stats entries to /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/clubb_stats_entries_user_nl.in ----- Run Submission ----- 2026-10-14 05:01:35 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-14 05:01:35 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-14 05:01:36 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-14 05:01:36 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-14 05:01:36 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-14 05:01:36 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-14 05:01:36 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-14 05:01:36 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-14 05:01:36 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/ctsm.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/mosart.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu 2026-10-14 05:01:38 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-14 05:01:39 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-14 05:01:39 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-14 05:01:39 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-14 05:01:39 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-14 05:01:39 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-14 05:01:39 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-14 05:01:39 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-14 05:01:39 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 4 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 4 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/cesm.log.261014-050138 Submitted job case.run with id None Success! Checking out externals... chem_proc up to date. carma up to date. pumas-frozen up to date. ali_arms up to date. atmos_phys up to date. Recursively checking out submodules of atmos_phys Sparse checkout cam-sima fxsparse ../.sima_phys_utils_sparse_checkout cam-sima up to date. fv3 up to date. Recursively checking out submodules of fv3 geoschem up to date. Recursively checking out submodules of geoschem cloud_j up to date. hetp up to date. hemco up to date. Recursively checking out submodules of hemco rrtmgp-data up to date. Sparse checkout mpas fxsparse ../.mpas_sparse_checkout mpas up to date. Sparse checkout cosp2 fxsparse ../.cosp_sparse_checkout cosp2 up to date. Sparse checkout ext_co2_cooling fxsparse ../.ext_co2_cooling_sparse_checkout ext_co2_cooling up to date. rtm up to date. mosart up to date. mizuRoute up to date. Recursively checking out submodules of mizuRoute ccs_config has modified files: ['machines/Depends.nvhpc', 'machines/config_machines.xml'] cime up to date. Recursively checking out submodules of cime cmeps has modified files: ['cime_config/config_component.xml'] cdeps up to date. Recursively checking out submodules of cdeps share up to date. parallelio up to date. cice up to date. Recursively checking out submodules of cice clm up to date. Recursively checking out submodules of clm fms up to date. Recursively checking out submodules of fms tools/CUPiD up to date. Recursively checking out submodules of tools/CUPiD tuv-x up to date. Recursively checking out submodules of HEMCO Recursively checking out submodules of src Recursively checking out submodules of fates Copying ccs_config files Restricting NVHPC OpenACC rules to CLUBB Applying CAM-SIMA Filepath workaround Removing old code directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu in 10 seconds. To abort, press ctrl-c ----- Case Setup ----- Compset longname is HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV Compset specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_compsets.xml Automatically adding SESP to compset Compset forcing is Historic transient ATM component is CAM cam7 physics:CAM low top model LND component is clm6.0:Satellite phenology: ICE component is Sea ICE (cice) model version 6 :prescribed cice OCN component is DOCN prescribed ocean mode ROF component is MOSART: MOdel for Scale Adaptive River Transport GLC component is Stub glacier (land ice) component WAV component is Stub wave component ESP component is Stub external system processing (ESP) component Pes specification file is /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/config_pes.xml Compset specific settings: name is RUN_STARTDATE and value is 1979-01-01 Compset specific settings: name is LND_SETS_DUST_EMIS_DRV_FLDS and value is FALSE Machine is larson-group Pes setting: grid match is a%ne3np4 Pes setting: grid is a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Pes setting: compset is HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Pes setting: tasks is {'NTASKS_ATM': 24, 'NTASKS_LND': 24, 'NTASKS_ROF': 24, 'NTASKS_ICE': 24, 'NTASKS_OCN': 24, 'NTASKS_GLC': 24, 'NTASKS_WAV': 24, 'NTASKS_CPL': 24} Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1} Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': 0, 'ROOTPE_OCN': 0, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0} Pes setting: pstrid is {} Pes setting: excl_stride is {} Pes other settings: {} Pes other settings append: {} Pes comments: none setting additional fields from config_pes: {}, append {} Compset is: HIST_CAM70%LT_CLM60%SP_CICE%PRES_DOCN%DOM_MOSART_SGLC_SWAV_SESP Grid is: a%ne3np4.pg3_l%ne3np4.pg3_oi%ne3np4.pg3_r%r05_g%null_w%null_z%null_m%gx3v7 Components in compset are: ['cam', 'clm', 'cice', 'docn', 'mosart', 'sglc', 'swav', 'sesp'] Using project from config_machines.xml: none No charge_account info available, using value from PROJECT cesm model version found: cam_4ncar_20240605_2f3c896-3202-g6fda8e144 Batch_system_type is none Creating Case directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu Creating batch scripts Writing case.run script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.case.run Creating file .case.run Writing case.st_archive script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.st_archive Creating file case.st_archive Writing case.cupid script from input template /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/template.cupid Creating file case.cupid Creating user_nl_xxx files for components and cpl Running cam.case_setup.py If an old case build already exists, might want to run 'case.build --clean' before building You can now run './preview_run' to get more info on how your case will be run ----- Compile Configuration ----- ----- Compile ----- Building case in directory /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu sharedlib_only is False model_only is False Generating component namelists as part of build 2026-10-14 05:02:14 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml ...calling cam buildcpp to set build time options CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-14 05:02:15 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-14 05:02:15 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-14 05:02:15 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-14 05:02:15 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-14 05:02:15 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-14 05:02:15 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-14 05:02:15 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-14 05:02:15 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] libs from case_support_libraries ['gptl', 'pio', 'csm_share', 'FTorch', 'CDEPS'] Building gptl with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/gptl.bldlog.261014-050214 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.gptl Building pio with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/pio.bldlog.261014-050214 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/build_scripts/buildlib.pio Building csm_share with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/csm_share.bldlog.261014-050214 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/share/buildlib.csm_share Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found. Building CDEPS with output to file /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/CDEPS.bldlog.261014-050214 Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/cime_config/buildlib - Building clm library Building lnd with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/lnd.bldlog.261014-050214 clm built in 1.375556 seconds - Building atm Library Building atm with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/atm.bldlog.261014-050214 - Building ice Library Building ice with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ice.bldlog.261014-050214 - Building ocn Library Building ocn with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/ocn.bldlog.261014-050214 - Building rof Library Building rof with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/rof.bldlog.261014-050214 docn built in 1.054854 seconds cice built in 1.168794 seconds mosart built in 1.228184 seconds cam built in 7.637807 seconds Building cesm from /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildexe with output to /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.bldlog.261014-050214 Component cesm exe build complete with 11 warnings Total build time: 30.088406 seconds MODEL BUILD HAS FINISHED SUCCESSFULLY ----- Run configuration ----- Wrote 321 stats entries to /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/clubb_stats_entries_user_nl.in ----- Run Submission ----- 2026-10-14 05:02:50 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-14 05:02:50 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-14 05:02:51 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-14 05:02:51 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-14 05:02:51 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-14 05:02:51 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-14 05:02:51 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-14 05:02:51 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-14 05:02:51 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] Checking that inputdata is available as part of case submission Loading input file list: 'Buildconf/ctsm.input_data_list' Loading input file list: 'Buildconf/docn.input_data_list' Loading input file list: 'Buildconf/mosart.input_data_list' Loading input file list: 'Buildconf/cam.input_data_list' Loading input file list: 'Buildconf/cpl.input_data_list' Loading input file list: 'Buildconf/cice.input_data_list' Check case OK submit_jobs case.run Submit job case.run Starting job script case.run Generating namelists for /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu 2026-10-14 05:02:53 atm Create namelist for component cam Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime_config/buildnml CAM namelist copy: file1 /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/Buildconf/camconf/atm_in file2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/atm_in 2026-10-14 05:02:54 lnd Create namelist for component clm Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/clm//cime_config/buildnml 2026-10-14 05:02:54 ice Create namelist for component cice Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice//cime_config/buildnml RUN: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cice/bld/generate_cice_decomp.pl -ccsmroot /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test -res ne3np4.pg3 -nx 486 -ny 1 -nproc 4 -thrds 1 -output all FROM: /home/jenkins/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu output: 486 1 81 1 2 roundrobin square-ice 2026-10-14 05:02:55 ocn Create namelist for component docn Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cdeps/docn/cime_config/buildnml docn_mode is prescribed 2026-10-14 05:02:55 rof Create namelist for component mosart Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/mosart//cime_config/buildnml 2026-10-14 05:02:55 glc Create namelist for component sglc Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sglc/cime_config/buildnml 2026-10-14 05:02:55 wav Create namelist for component swav Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/swav/cime_config/buildnml 2026-10-14 05:02:55 esp Create namelist for component sesp Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/non_py/src/components/stub_comps_nuopc/sesp/cime_config/buildnml 2026-10-14 05:02:55 cpl Create namelist for component drv Calling /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/components/cmeps/cime_config/buildnml Writing nuopc_runconfig for components ['CPL', 'ATM', 'LND', 'ICE', 'OCN', 'ROF'] ------------------------------------------------------------------------- - Prestage required restarts into /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run - Case input data directory (DIN_LOC_ROOT) is /home/pub/cam_inputdata - Checking for required input datasets in DIN_LOC_ROOT ------------------------------------------------------------------------- run command is mpirun -np 4 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 4 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/cesm.log.261014-050253 Submitted job case.run with id None Success! =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Using /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test with origin https://github.com/larson-group/cam.git Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': CheckRange = False: only comparing baseline to final commit. Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc Run commands: ['rm -f /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc &&\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 . &&\nsed -i -e \'s/^CASE=.*/CASE="subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37"/\' -e \'s/^COMPSET=.*/COMPSET="FHISTC_LTso"/\' run_scripts/run_cesm_uwm_coarse_res.sh &&\nrun_scripts/run_cesm_uwm_coarse_res.sh'] Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: 1eca30798f2886be7d8594c8826320737b7a76cd Found: BIT_CHANGING Checking Commit: 1eca30798f2886be7d8594c8826320737b7a76cd Checking out 1eca30798f2886be7d8594c8826320737b7a76cd Running: 'rm -f /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc && run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 . && sed -i -e 's/^CASE=.*/CASE="subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37"/' -e 's/^COMPSET=.*/COMPSET="FHISTC_LTso"/' run_scripts/run_cesm_uwm_coarse_res.sh && run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: 1eca30798f2886be7d8594c8826320737b7a76cd There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Checking out 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 Running: 'rm -f /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc && run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 . && sed -i -e 's/^CASE=.*/CASE="subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37"/' -e 's/^COMPSET=.*/COMPSET="FHISTC_LTso"/' run_scripts/run_cesm_uwm_coarse_res.sh && run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_LTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Commit '1eca30798f2886be7d8594c8826320737b7a76cd' is BIT_CHANGING and properly labelled as such. =============================== Test Results =============================== Commit Range Checked = 6fda8e14438857fdf16e8afb5b32a52302cfd2e9...1eca30798f2886be7d8594c8826320737b7a76cd -- CheckRange was set to False, no intermediate commits checked New Unresolved Commits: 1eca30798f2886be7d8594c8826320737b7a76cd No fake BIT_CHANGING commits found. Resolved: 1eca30798f2886be7d8594c8826320737b7a76cd No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Ignoring 1eca30798f2886be7d8594c8826320737b7a76cd since it failed to produce output. =============================== Cleanup =============================== Removing all generated output ================== Unresolved Commit Status ================== No remaining Unresolved Commits. ================== FAILED Commits ================== These are the commits which entirely failed to produce output: 1eca30798f2886be7d8594c8826320737b7a76cd 6fda8e14438857fdf16e8afb5b32a52302cfd2e9 Exiting with code: 0 [Pipeline] } [Pipeline] // catchError [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS