Started by an SCM change Obtained jenkins_tests/cam_BFB_coarse_res_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on nelson in /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision d8aecdb15bc1aa14eb613f8841c6edea58a88750 (refs/remotes/origin/clubb_silhs_devel) Commit message: "Pumas fix test (#220)" > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f d8aecdb15bc1aa14eb613f8841c6edea58a88750 # timeout=10 > git rev-list --no-walk d0a7b41dce2ec8ab0dbd72951960f3ae7cc7f6bd # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + ulimit -s 8388608 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_gfortran_test_config nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online nelson is back online Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found. submit_jobs case.run Submit job case.run nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online nelson is back online nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online nelson is back online nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online nelson is back online nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online nelson is back online nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online nelson is back online nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online nelson is back online nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online nelson is back online nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online nelson is back online nelson seems to be removed or offline (java.lang.InterruptedException); will wait for 5 min 0 sec for it to come back online nelson is back online Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 4 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/cesm.log.260708-043125 Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found. submit_jobs case.run Submit job case.run check for resubmit dout_s False mach larson-group resubmit_num 0 -------- Variable Diff Summary -------- File 1: d8aecdb15bc1aa14eb613f8841c6edea58a88750 File 2: afd5bbb8c1bc8be6bc8e607ce70d7912ccfdf406 Variables discovered (union): 1724 Variables present in both files: 1724 Variables only in file 1: 0 Variables only in file 2: 0 Variables with differences (all dimensions): 2 Variables identical (all dimensions): 1722 Variables all-zero in file 1 (actual data): 131 Variables all-zero in file 2 (actual data): 131 Variables all-zero in both files (actual data): 131 3D variables tested (PASS/FAIL basis): 0 3D variables with differences: 0 3D variables identical: 0 3D variables all-zero in both files (actual data): 0 Variables skipped for PASS/FAIL (not 3D in either file): 1724 Variables with differences: - date_written | reason=data mismatch | file1: ndim=2, dims=('time', 'chars') | file2: ndim=2, dims=('time', 'chars') - time_written | reason=data mismatch | file1: ndim=2, dims=('time', 'chars') | file2: ndim=2, dims=('time', 'chars') PASS: No differences found in 3D variables. =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Using /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test with origin https://github.com/larson-group/cam.git Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': - d0a7b41dce2ec8ab0dbd72951960f3ae7cc7f6bd CheckRange = False: only comparing baseline to final commit. Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu.cam.rh0.1979-01-02-00000.nc Run commands: ['run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 .', '\nrun_scripts/run_cesm_uwm_coarse_res.sh'] Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: d8aecdb15bc1aa14eb613f8841c6edea58a88750 Found: BIT_CHANGING Found: RESOLVED:d0a7b41dce2ec8ab0dbd72951960f3ae7cc7f6bd Checking Commit: d8aecdb15bc1aa14eb613f8841c6edea58a88750 Checking out d8aecdb15bc1aa14eb613f8841c6edea58a88750 Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 .' Running: 'run_scripts/run_cesm_uwm_coarse_res.sh' Checking out afd5bbb8c1bc8be6bc8e607ce70d7912ccfdf406 Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_FHISTC_MTso_cam7_ne3pg3_ne3pg3_mg37_larson-group_gnu --reuse_build --silhs 4 .' Running: 'run_scripts/run_cesm_uwm_coarse_res.sh' Diffing: 'python3 run_scripts/netcdf_3D_vars_diff.py d8aecdb15bc1aa14eb613f8841c6edea58a88750 afd5bbb8c1bc8be6bc8e607ce70d7912ccfdf406' WARNING: commit 'd8aecdb15bc1aa14eb613f8841c6edea58a88750' was supposed to be BIT_CHANGING, but is not. =============================== Test Results =============================== Commit Range Checked = afd5bbb8c1bc8be6bc8e607ce70d7912ccfdf406...d8aecdb15bc1aa14eb613f8841c6edea58a88750 -- CheckRange was set to False, no intermediate commits checked No new Unresolved commits found. Fake BIT_CHANGING Commits: d8aecdb15bc1aa14eb613f8841c6edea58a88750 Resolved: d0a7b41dce2ec8ab0dbd72951960f3ae7cc7f6bd No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: d8aecdb15bc1aa14eb613f8841c6edea58a88750 =============================== Cleanup =============================== Removing all generated output REMOVING: afd5bbb8c1bc8be6bc8e607ce70d7912ccfdf406 REMOVING: d8aecdb15bc1aa14eb613f8841c6edea58a88750 ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS