Started by an SCM change Obtained jenkins_tests/cam_BFB_coarse_res_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' using GIT_ASKPASS to set credentials larsongroupsysadmin github token > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 # timeout=10 Commit message: "Merge pull request #218 from larson-group/cam6_4_183_clubb_silhs_merge" > git rev-list --no-walk 692f0d3e4af08e9083d2c1fd9a3cd440949f9d89 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37 + ulimit -s 8388608 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_gfortran_test_config Build script /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/libraries/FTorch/buildlib for component FTorch not found. submit_jobs case.run Submit job case.run check for resubmit dout_s False mach larson-group resubmit_num 0 Cmd('git') failed due to: exit code(1) cmdline: git checkout ccs_config_cesm1.0.0 stderr: 'error: Your local changes to the following files would be overwritten by checkout: machines/Depends.nvhpc machines/config_machines.xml Please commit your changes or stash them before you switch branches. Aborting' ERROR: Command: '/usr/bin/xmllint --xinclude --noout --schema /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/CIME/data/config/xml_schemas/config_machines_version3.xsd /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/larson-group/config_machines.xml' failed with error '/home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/larson-group/config_machines.xml:20: element GPU_TYPE: Schemas validity error : Element 'GPU_TYPE': This element is not expected. Expected is one of ( MPI_GPU_WRAPPER_SCRIPT, COSTPES_PER_NODE, PROJECT_REQUIRED, TORCH_DIR, mpirun ). /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/ccs_config/machines/larson-group/config_machines.xml fails to validate' from dir '/home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test/cime/scripts' =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Using /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test with origin https://github.com/larson-group/cam.git Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': CheckRange = False: only comparing baseline to final commit. Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc Run commands: ['rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37', '\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_f10_f10_mg37 --reuse_build --silhs 4 .', '\nrun_scripts/run_cesm_uwm_coarse_res.sh'] Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 Checking Commit: 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 Running: final commit to check, not labelled BIT_CHANGING Checking out 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_f10_f10_mg37 --reuse_build --silhs 4 .' Running: 'run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Checking out 692f0d3e4af08e9083d2c1fd9a3cd440949f9d89 Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/subcol_SILHS_UWM_debug_f10_f10_mg37 --reuse_build --silhs 4 .' Running: 'run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: 692f0d3e4af08e9083d2c1fd9a3cd440949f9d89 There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== ISSUE WITH COMMIT DETECTED: 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 differs from 692f0d3e4af08e9083d2c1fd9a3cd440949f9d89 =============================== Test Results =============================== Commit Range Checked = 692f0d3e4af08e9083d2c1fd9a3cd440949f9d89...8e7ddbdcdd022b2a08ec537f4bde139f940f0209 -- CheckRange was set to False, no intermediate commits checked New Unresolved Commits: 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 No fake BIT_CHANGING commits found. Remaining Unresolved Commits (oldest commit is listed first): 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 =============================== Updating Config File =============================== Saving into UnresolvedCommits: 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 Ignoring 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 since it failed to produce output. =============================== Cleanup =============================== Removing all generated output ================== Unresolved Commit Status ================== Remaining Unresolved Commits (oldest commit is listed first): 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 ================== FAILED Commits ================== These are the commits which entirely failed to produce output: 8e7ddbdcdd022b2a08ec537f4bde139f940f0209 692f0d3e4af08e9083d2c1fd9a3cd440949f9d89 Exiting with code: 1 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] } [Pipeline] // script [Pipeline] script [Pipeline] { [Pipeline] emailext Sending email to: messnermet@uwm.edu [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline ERROR: script returned exit code 1 Finished: FAILURE