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Started by an SCM change Obtained jenkins_tests/cam_BFB_coarse_res_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Still waiting to schedule task Waiting for next available executor Running on malan in /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.30.2' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch Checking out Revision ab7c6f2d2591fed86c6eb2b4efc80e73af2be84b (refs/remotes/origin/clubb_silhs_devel) Commit message: "Autoupdated CLUBB_core Commit 7447595af2409f56faa42e4fa915078e13a2cbf1 Author: domkesteffen Date: Tue Dec 3 09:19:40 2024 -0600 Likely non-bit-changing housekeeping (#1213) Non-bit-changing housekeeping regarding wp2 clipping CLUBB ticket #1165" > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f ab7c6f2d2591fed86c6eb2b4efc80e73af2be84b # timeout=10 > git rev-list --no-walk c94bc13905bf56ce6e16ec6910e15bab08392572 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Update sys_admin Repo) [Pipeline] sh + git -C /home/pub/jenkins_BFB_test_configs/sys_admin pull hint: Pulling without specifying how to reconcile divergent branches is hint: discouraged. You can squelch this message by running one of the following hint: commands sometime before your next pull: hint: hint: git config pull.rebase false # merge (the default strategy) hint: git config pull.rebase true # rebase hint: git config pull.ff only # fast-forward only hint: hint: You can replace "git config" with "git config --global" to set a default hint: preference for all repositories. You can also pass --rebase, --no-rebase, hint: or --ff-only on the command line to override the configured default per hint: invocation. Already up to date. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop21-skylake_avx512/gcc-12.2.0/lmod-8.7.37-d6vyrvvncsuguygovgvimahv5kfyaunp/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop21-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop21-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop21-x86_64/Core + rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37 + ulimit -s 8388608 + python3 /home/pub/jenkins_BFB_test_configs/sys_admin/python_nightly_test_suite/run_test.py -c /home/pub/jenkins_BFB_test_configs/cam_BFB_coarse_res_gfortran_test_config ERROR: Unknown Job Queue specified use --force to set submit_jobs case.run Submit job case.run Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/cesm.log.241204-033454 ERROR: Unknown Job Queue specified use --force to set submit_jobs case.run Submit job case.run Exception from case_run: ERROR: RUN FAIL: Command 'mpirun -np 2 /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed See log file for details: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/cesm.log.241204-034107 =============================== Configuring Test =============================== Working directory set to: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Checking specified repo: /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test Using /home/jenkins/workspace/cam_BFB_coarse_res_gfortran_test with origin https://github.com/larson-group/cam.git Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': CheckRange = False: only comparing baseline to final commit. Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc Run commands: ['rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37', '\nrun_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 .', '\nrun_scripts/run_cesm_uwm_coarse_res.sh'] Diffing command: python3 run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: ab7c6f2d2591fed86c6eb2b4efc80e73af2be84b Checking Commit: ab7c6f2d2591fed86c6eb2b4efc80e73af2be84b Running: final commit to check, not labelled BIT_CHANGING Checking out ab7c6f2d2591fed86c6eb2b4efc80e73af2be84b Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 .' Running: 'run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: ab7c6f2d2591fed86c6eb2b4efc80e73af2be84b There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== Checking out 86df31ff4b0640c119437d4690e9556fa4ff36e5 Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: 'run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 .' Running: 'run_scripts/run_cesm_uwm_coarse_res.sh' ================== WARNING ================== Commit: 86df31ff4b0640c119437d4690e9556fa4ff36e5 There was a problem copying the output. Did the run complete? Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc The run will continue, and this commit will be considered unresolved. =========================================== ISSUE WITH COMMIT DETECTED: ab7c6f2d2591fed86c6eb2b4efc80e73af2be84b differs from 86df31ff4b0640c119437d4690e9556fa4ff36e5 =============================== Test Results =============================== Commit Range Checked = 86df31ff4b0640c119437d4690e9556fa4ff36e5...ab7c6f2d2591fed86c6eb2b4efc80e73af2be84b -- CheckRange was set to False, no intermediate commits checked No new Unresolved commits found. No fake BIT_CHANGING commits found. No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Ignoring ab7c6f2d2591fed86c6eb2b4efc80e73af2be84b since it failed to produce output. =============================== Cleanup =============================== Removing all generated output ================== Unresolved Commit Status ================== No remaining Unresolved Commits. ================== FAILED Commits ================== These are the commits which entirely failed to produce output: ab7c6f2d2591fed86c6eb2b4efc80e73af2be84b 86df31ff4b0640c119437d4690e9556fa4ff36e5 Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS