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Started by an SCM change Obtained jenkins_tests/cam_coarse_res_bin_diff_regression_gfortran_test/Jenkinsfile from git https://github.com/larson-group/cam.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/cam_coarse_res_bin_diff_regression_gfortran_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git Cloning the remote Git repository Cloning repository https://github.com/larson-group/cam.git > git init /home/jenkins/workspace/cam_coarse_res_bin_diff_regression_gfortran_test # timeout=10 Fetching upstream changes from https://github.com/larson-group/cam.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/cam.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/larson-group/cam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/clubb_silhs_devel^{commit} # timeout=10 Checking out Revision dabbf904b1ae020619366b1720c2ae531de0370c (refs/remotes/origin/clubb_silhs_devel) > git config core.sparsecheckout # timeout=10 > git checkout -f dabbf904b1ae020619366b1720c2ae531de0370c # timeout=10 Commit message: "Autoupdated CLUBB_core Commit 411597c76553f0baeb2bf38a8624c56adf4678da Author: Gunther Huebler Date: Thu Oct 3 16:15:08 2024 -0500 Fixing bug. This loop has a vertical dependency prevent the use of collapse(2). See https://github.com/larson-group/cam/issues/175\#issuecomment-2261283301" > git rev-list --no-walk a9cbe307c5d265f0b893ea01a871c98fe19289a4 # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Clone SysAdmin to tmp) [Pipeline] sh + rm -rf /home/jenkins/cam_bit_diff_test_workspace/sys_admin + git clone https://github.com/larson-group/sys_admin.git /home/jenkins/cam_bit_diff_test_workspace/sys_admin Cloning into '/home/jenkins/cam_bit_diff_test_workspace/sys_admin'... [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Run Python Test) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37 + ulimit -s 8388608 + python3 /home/jenkins/cam_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/cam_bit_diff_test_workspace/bit_diff_cam_config ERROR: Unknown Job Queue specified use --force to set submit_jobs case.run Submit job case.run No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 ERROR: Unknown Job Queue specified use --force to set submit_jobs case.run Submit job case.run No timing file found in run directory check for resubmit dout_s False mach larson-group resubmit_num 0 PASS: All 3D output vars are zero. =============================== Configuring Test =============================== Working directory set to: /home/jenkins/cam_bit_diff_test_workspace Trying to clone repo... Cloned repo location: /home/jenkins/cam_bit_diff_test_workspace/repo Output Save Mode: none Using branch: clubb_silhs_devel Making list from 'UnresolvedCommits': Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37/run/subcol_SILHS_UWM_debug_f10_f10_mg37.cam.rh0.0001-01-02-00000.nc Run commands: ['rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37', '\nrepo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo', '\nrepo/run_scripts/run_cesm_uwm_coarse_res.sh'] Diffing command: python3 repo/run_scripts/netcdf_3D_vars_diff.py =============================== Running Test =============================== Parsing message from commit: dabbf904b1ae020619366b1720c2ae531de0370c Checking Commit: dabbf904b1ae020619366b1720c2ae531de0370c Running: final commit to check, not labelled BIT_CHANGING Checking out dabbf904b1ae020619366b1720c2ae531de0370c Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: ' repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo' Running: ' repo/run_scripts/run_cesm_uwm_coarse_res.sh' Checking out a9cbe307c5d265f0b893ea01a871c98fe19289a4 Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37' Running: ' repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo' Running: ' repo/run_scripts/run_cesm_uwm_coarse_res.sh' Diffing: 'python3 repo/run_scripts/netcdf_3D_vars_diff.py dabbf904b1ae020619366b1720c2ae531de0370c a9cbe307c5d265f0b893ea01a871c98fe19289a4' =============================== Test Results =============================== Commit Range Checked = a9cbe307c5d265f0b893ea01a871c98fe19289a4...dabbf904b1ae020619366b1720c2ae531de0370c No new Unresolved commits found. No fake BIT_CHANGING commits found. No remaining Unresolved Commits. =============================== Updating Config File =============================== Saving into UnresolvedCommits: Saving into BaselineCommit: dabbf904b1ae020619366b1720c2ae531de0370c =============================== Cleanup =============================== Removed repo. Removing all generated output REMOVING: a9cbe307c5d265f0b893ea01a871c98fe19289a4 REMOVING: dabbf904b1ae020619366b1720c2ae531de0370c ================== Unresolved Commit Status ================== No remaining Unresolved Commits. Exiting with code: 0 [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Declarative: Post Actions) [Pipeline] script [Pipeline] { [Pipeline] cleanWs [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] done [Pipeline] sh + chmod -R 755 /home/jenkins/cam_output [Pipeline] } [Pipeline] // script [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS