+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37
+ ulimit -s 8388608
+ python3 /home/jenkins/cam_bit_diff_test_workspace/sys_admin/python_nightly_test_suite/run_test.py -c /home/jenkins/cam_bit_diff_test_workspace/bit_diff_cam_config
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False
mach larson-group
resubmit_num 0
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False
mach larson-group
resubmit_num 0
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False
mach larson-group
resubmit_num 0
ERROR: Unknown Job Queue specified use --force to set
submit_jobs case.run
Submit job case.run
No timing file found in run directory
check for resubmit
dout_s False
mach larson-group
resubmit_num 0
=============================== Configuring Test ===============================
Working directory set to: /home/jenkins/cam_bit_diff_test_workspace
Trying to clone repo...
Cloned repo location: /home/jenkins/cam_bit_diff_test_workspace/repo
Output Save Mode: none
Using branch: clubb_silhs_devel
Making list from 'UnresolvedCommits':
Run Output Path: /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_f10_f10_mg37_larson-group_gnu.cam.rh0.0001-01-02-00000.nc
Run commands: ['rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37', '\nrepo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo', '\nrepo/run_scripts/run_cesm_uwm_coarse_res.sh']
Diffing command: python3 repo/run_scripts/netcdf_3D_vars_diff.py
=============================== Running Test ===============================
Parsing message from commit: 047ebbfcf32e597686453e21e51ec18f3dc256ae
Parsing message from commit: 151588e72d1a3ae9978649953cce44215c4b57a4
Parsing message from commit: a9cbe307c5d265f0b893ea01a871c98fe19289a4
Checking Commit: 047ebbfcf32e597686453e21e51ec18f3dc256ae
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: 151588e72d1a3ae9978649953cce44215c4b57a4
Skipping: not final commit and not labelled BIT_CHANGING
Checking Commit: a9cbe307c5d265f0b893ea01a871c98fe19289a4
Running: final commit to check, not labelled BIT_CHANGING
Checking out a9cbe307c5d265f0b893ea01a871c98fe19289a4
Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37'
Running: '
repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo'
Running: '
repo/run_scripts/run_cesm_uwm_coarse_res.sh'
================== WARNING ==================
Commit: a9cbe307c5d265f0b893ea01a871c98fe19289a4
There was a problem copying the output.
Did the run complete?
Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_f10_f10_mg37_larson-group_gnu.cam.rh0.0001-01-02-00000.nc
The run will continue, and this commit will be
considered unresolved.
===========================================
Checking out 1d86f1d2b130402eb89bf690b5adbb73b6d65466
Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37'
Running: '
repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo'
Running: '
repo/run_scripts/run_cesm_uwm_coarse_res.sh'
================== WARNING ==================
Commit: 1d86f1d2b130402eb89bf690b5adbb73b6d65466
There was a problem copying the output.
Did the run complete?
Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_f10_f10_mg37_larson-group_gnu.cam.rh0.0001-01-02-00000.nc
The run will continue, and this commit will be
considered unresolved.
===========================================
ISSUE WITH COMMIT DETECTED: a9cbe307c5d265f0b893ea01a871c98fe19289a4 differs from 1d86f1d2b130402eb89bf690b5adbb73b6d65466
Finding all BIT_CHANGING commits in range: 1d86f1d2b130402eb89bf690b5adbb73b6d65466...a9cbe307c5d265f0b893ea01a871c98fe19289a4
Checking out 047ebbfcf32e597686453e21e51ec18f3dc256ae
Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37'
Running: '
repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo'
Running: '
repo/run_scripts/run_cesm_uwm_coarse_res.sh'
================== WARNING ==================
Commit: 047ebbfcf32e597686453e21e51ec18f3dc256ae
There was a problem copying the output.
Did the run complete?
Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_f10_f10_mg37_larson-group_gnu.cam.rh0.0001-01-02-00000.nc
The run will continue, and this commit will be
considered unresolved.
===========================================
Commit 1d86f1d2b130402eb89bf690b5adbb73b6d65466 already failed. Will not run again
Checking out 151588e72d1a3ae9978649953cce44215c4b57a4
Running: 'rm -rf /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37'
Running: '
repo/run_scripts/set_up_repo.py --caseroot /home/$USER/cam_output/caseroot/$CASE --reuse_build --silhs 4 repo'
Running: '
repo/run_scripts/run_cesm_uwm_coarse_res.sh'
================== WARNING ==================
Commit: 151588e72d1a3ae9978649953cce44215c4b57a4
There was a problem copying the output.
Did the run complete?
Is the output path correct? /home/jenkins/cam_output/scratch/subcol_SILHS_UWM_debug_f10_f10_mg37_larson-group_gnu/run/subcol_SILHS_UWM_debug_f10_f10_mg37_larson-group_gnu.cam.rh0.0001-01-02-00000.nc
The run will continue, and this commit will be
considered unresolved.
===========================================
Commit 047ebbfcf32e597686453e21e51ec18f3dc256ae already failed. Will not run again
Commit a9cbe307c5d265f0b893ea01a871c98fe19289a4 already failed. Will not run again
Commit 151588e72d1a3ae9978649953cce44215c4b57a4 already failed. Will not run again
Found:
047ebbfcf32e597686453e21e51ec18f3dc256ae
151588e72d1a3ae9978649953cce44215c4b57a4
a9cbe307c5d265f0b893ea01a871c98fe19289a4
=============================== Test Results ===============================
Commit Range Checked = 1d86f1d2b130402eb89bf690b5adbb73b6d65466...a9cbe307c5d265f0b893ea01a871c98fe19289a4
New Unresolved Commits:
047ebbfcf32e597686453e21e51ec18f3dc256ae
151588e72d1a3ae9978649953cce44215c4b57a4
a9cbe307c5d265f0b893ea01a871c98fe19289a4
No fake BIT_CHANGING commits found.
Remaining Unresolved Commits (oldest commit is listed first):
047ebbfcf32e597686453e21e51ec18f3dc256ae
151588e72d1a3ae9978649953cce44215c4b57a4
a9cbe307c5d265f0b893ea01a871c98fe19289a4
=============================== Updating Config File ===============================
Saving into UnresolvedCommits: 047ebbfcf32e597686453e21e51ec18f3dc256ae
151588e72d1a3ae9978649953cce44215c4b57a4
a9cbe307c5d265f0b893ea01a871c98fe19289a4
Ignoring a9cbe307c5d265f0b893ea01a871c98fe19289a4 since it failed to produce output.
Ignoring 151588e72d1a3ae9978649953cce44215c4b57a4 since it failed to produce output.
Ignoring 047ebbfcf32e597686453e21e51ec18f3dc256ae since it failed to produce output.
=============================== Cleanup ===============================
Removed repo.
Removing all generated output
================== Unresolved Commit Status ==================
Remaining Unresolved Commits (oldest commit is listed first):
047ebbfcf32e597686453e21e51ec18f3dc256ae
151588e72d1a3ae9978649953cce44215c4b57a4
a9cbe307c5d265f0b893ea01a871c98fe19289a4
================== FAILED Commits ==================
These are the commits which entirely failed to produce output:
a9cbe307c5d265f0b893ea01a871c98fe19289a4
1d86f1d2b130402eb89bf690b5adbb73b6d65466
047ebbfcf32e597686453e21e51ec18f3dc256ae
151588e72d1a3ae9978649953cce44215c4b57a4
Exiting with code: 1
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