BRANCHorigin/mixing_length_fix_2Started by user agent_devagent_devagent_dev00006498906354690.98182398239129ba460711595cf96ca978a2f726cdb0e2010d15e9ba460711595cf96ca978a2f726cdb0e2010d15erefs/remotes/origin/jax_microphys9ba460711595cf96ca978a2f726cdb0e2010d15e9ba460711595cf96ca978a2f726cdb0e2010d15erefs/remotes/origin/jax_microphys33bd81f6f13451574e5b21cbd0a94d682e599b97b6bd81f6f13451574e5b21cbd0a94d682e599b97b6refs/remotes/origin/mixing_length_fix_2bd81f6f13451574e5b21cbd0a94d682e599b97b6bd81f6f13451574e5b21cbd0a94d682e599b97b6refs/remotes/origin/mixing_length_fix_27417f2207397395d5681d8322c590bbc0bc302a6e417f2207397395d5681d8322c590bbc0bc302a6erefs/remotes/origin/F90-fix-multicol+l_add_dycore_grid417f2207397395d5681d8322c590bbc0bc302a6e417f2207397395d5681d8322c590bbc0bc302a6erefs/remotes/origin/F90-fix-multicol+l_add_dycore_grid28d851b14641f3119dbce3e653cc5394d43a4d6b1ed851b14641f3119dbce3e653cc5394d43a4d6b1erefs/remotes/origin/clubb_case_runnerd851b14641f3119dbce3e653cc5394d43a4d6b1ed851b14641f3119dbce3e653cc5394d43a4d6b1erefs/remotes/origin/clubb_case_runner22d92c017452c2e58c3dee80d3a370a7771c98d62cd92c017452c2e58c3dee80d3a370a7771c98d62crefs/remotes/origin/huebleruwm/cachy-rocm-jaxd92c017452c2e58c3dee80d3a370a7771c98d62cd92c017452c2e58c3dee80d3a370a7771c98d62crefs/remotes/origin/huebleruwm/cachy-rocm-jax17996c5f98796bec7a14a0c5b47dcf17c07b1c452f996c5f98796bec7a14a0c5b47dcf17c07b1c452frefs/remotes/origin/script_arg_cleanup996c5f98796bec7a14a0c5b47dcf17c07b1c452f996c5f98796bec7a14a0c5b47dcf17c07b1c452frefs/remotes/origin/script_arg_cleanup1488f030077490c706dcbbeac4e9b662ad39834c6388f030077490c706dcbbeac4e9b662ad39834c63refs/remotes/origin/jenkins_test_cleanup88f030077490c706dcbbeac4e9b662ad39834c6388f030077490c706dcbbeac4e9b662ad39834c63refs/remotes/origin/jenkins_test_cleanup34ccaf683a6e835e4d761b5a448c41dc6ffe27fa14ccaf683a6e835e4d761b5a448c41dc6ffe27fa1refs/remotes/origin/jenkins_jax_vs_fortran4ccaf683a6e835e4d761b5a448c41dc6ffe27fa14ccaf683a6e835e4d761b5a448c41dc6ffe27fa1refs/remotes/origin/jenkins_jax_vs_fortran241ec893a487d32b4b93817d8438a6459dd0cc55c31ec893a487d32b4b93817d8438a6459dd0cc55c3refs/remotes/origin/jax_driver_lifecycle1ec893a487d32b4b93817d8438a6459dd0cc55c31ec893a487d32b4b93817d8438a6459dd0cc55c3refs/remotes/origin/jax_driver_lifecycle20648ab0080cab3b33ba9eb7525b598b9e882118e2648ab0080cab3b33ba9eb7525b598b9e882118e2refs/remotes/origin/jax_silhs648ab0080cab3b33ba9eb7525b598b9e882118e2648ab0080cab3b33ba9eb7525b598b9e882118e2refs/remotes/origin/jax_silhs25c0eebd264de06340a4243dadb271a1413940bdc0c0eebd264de06340a4243dadb271a1413940bdc0refs/remotes/origin/clubb_jax_debug_printsc0eebd264de06340a4243dadb271a1413940bdc0c0eebd264de06340a4243dadb271a1413940bdc0refs/remotes/origin/clubb_jax_debug_prints2153e40d747c3bbee9d067136b700534b58969059d53e40d747c3bbee9d067136b700534b58969059drefs/remotes/origin/pytest_cleanup53e40d747c3bbee9d067136b700534b58969059d53e40d747c3bbee9d067136b700534b58969059drefs/remotes/origin/pytest_cleanup5015ae8fae1260bf888d109b1c408ba7bdf424bcc015ae8fae1260bf888d109b1c408ba7bdf424bccrefs/remotes/origin/test_different_f90_vs_jax_flags015ae8fae1260bf888d109b1c408ba7bdf424bcc015ae8fae1260bf888d109b1c408ba7bdf424bccrefs/remotes/origin/test_different_f90_vs_jax_flags29219fcd5176efd825d82943c1dafb74cfb5e712e2219fcd5176efd825d82943c1dafb74cfb5e712e2refs/remotes/origin/jax_timing219fcd5176efd825d82943c1dafb74cfb5e712e2219fcd5176efd825d82943c1dafb74cfb5e712e2refs/remotes/origin/jax_timing32ec5e8070d3173282a6317b067f8673a657a1eb6fec5e8070d3173282a6317b067f8673a657a1eb6frefs/remotes/origin/masterec5e8070d3173282a6317b067f8673a657a1eb6fec5e8070d3173282a6317b067f8673a657a1eb6frefs/remotes/origin/masterbd81f6f13451574e5b21cbd0a94d682e599b97b6bd81f6f13451574e5b21cbd0a94d682e599b97b6refs/remotes/origin/mixing_length_fix_2https://github.com/larson-group/clubb.git00529testReportfalse#336498904231219clubb_branch_jax #3333false3311091ABORTED1792476444387https://carson.math.uwm.edu/jenkins/view/sam_branch_tests/job/clubb_branch_jax/33/src/generalized_grid_test.F90src/CLUBB_core/setup_clubb_pdf_params.F90clubb_python_api/clubb_f2py.pyfsrc/CLUBB_core/fill_holes.F90clubb_python_api/f2py_fortran_wrappers/precipitation_fraction_wrapper.F90clubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_precipitation_fraction.pysrc/G_unit_test_types/mu_sigma_hm_tests.F90clubb_python_api/clubb_python/CLUBB_core/precipitation_fraction.pysrc/Microphys/pdf_hydromet_microphys_wrapper.F90src/CLUBB_core/precipitation_fraction.F908369512fcc6487603491e12ac13376de2aec2a0b1792463005000https://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb params 1d to 2d fix (#1392) * Fix: clubb params is a shape (ngrdcol,nparams) that is passed into subroutines that expect a 1d array Also fixed dependent other places in code and changed the python api. This is BIT_CHANGING for multicol. If a 2d array is passed into a function that expects the arr to be 1d fortran just passes the first col of the arr. Therefore the changes dont affect single col runs. For multicol runs other indexing is needed * fill_holes_vertical_api expects the passed gr%dzt to have shape(ngrdcol,nz) but the code passes the whole gr%dzt array although each column is traversed one by one. So ngrdcol=1 is passed each time. No effect on single col, as with ngrdcol = 1, gr%dzt and gr%dzt(1:1,:) are the same. Affects multicol if l_hole_fill = .true. and the hydrometeor is a mixing ratio (name starts with r) and some value is actually negative Therefore BIT_CHANGING 2026-10-19 21:23:25 -05008369512fcc6487603491e12ac13376de2aec2a0bClubb params 1d to 2d fix (#1392)editclubb_python_api/clubb_python/CLUBB_core/precipitation_fraction.pyeditclubb_python_api/f2py_fortran_wrappers/precipitation_fraction_wrapper.F90editclubb_python_api/pytests/auto_llm_generated_pytests/test_call_tree_precipitation_fraction.pyeditsrc/CLUBB_core/setup_clubb_pdf_params.F90editclubb_python_api/clubb_f2py.pyfeditsrc/CLUBB_core/fill_holes.F90editsrc/Microphys/pdf_hydromet_microphys_wrapper.F90editsrc/generalized_grid_test.F90editsrc/G_unit_test_types/mu_sigma_hm_tests.F90editsrc/CLUBB_core/precipitation_fraction.F90clubb_jax/tests/run_jax_timestep_gradient_test.pyclubb_python_api/pytests/auto_llm_generated_pytests/test_python_port_api_coverage.pyclubb_jax/README.mddoc/coherence_mixing_length.mdbd81f6f13451574e5b21cbd0a94d682e599b97b61792476385000https://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduUse configured mixing length in driver derivative checks Remove method overrides from the general timestep autodiff check and keep run instructions out of the scientific method note. Exclude the native mixing-length routine's internal timers from Python API-export requirements. BOMEX and ATEX default-method gradient, JVP, finite-difference and eager/JIT checks pass. The focused cross-module API audit passes with its other expectations retained. 2026-10-20 01:06:25 -0500bd81f6f13451574e5b21cbd0a94d682e599b97b6Use configured mixing length in driver derivative checkseditclubb_python_api/pytests/auto_llm_generated_pytests/test_python_port_api_coverage.pyeditclubb_jax/README.mdeditclubb_jax/tests/run_jax_timestep_gradient_test.pyeditdoc/coherence_mixing_length.mdgithttps://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttps://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse34https://carson.math.uwm.edu/jenkins/view/sam_branch_tests/job/clubb_branch_jax/34/32https://carson.math.uwm.edu/jenkins/view/sam_branch_tests/job/clubb_branch_jax/32/