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+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ . /opt/lmod//lmod/lmod/init/profile
+++ '[' -z '' ']'
+++ LMOD_ALLOW_ROOT_USE=yes
+++ '[' -n '' ']'
+++ '[' yes '!=' yes ']'
+++ '[' -z '' ']'
+++ export MODULEPATH_ROOT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles
+++ MODULEPATH_ROOT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles
+++ export USER=jenkins
+++ USER=jenkins
++++ uname
+++ export LMOD_sys=Linux
+++ LMOD_sys=Linux
+++ '[' -z '' ']'
+++ '[' -f /etc/lmod/.modulespath ']'
+++ LMOD_MODULEPATH_INIT=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/.modulespath
+++ '[' -f /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/.modulespath ']'
++++ /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/libexec/addto --append MODULEPATH /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core
+++ export MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core
+++ MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core
++++ /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/libexec/addto --append MODULEPATH /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/modulefiles/Core
+++ export MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/modulefiles/Core
+++ MODULEPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Linux:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/modulefiles/Core:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/modulefiles/Core
+++ '[' -n '' ']'
+++ export BASH_ENV=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash
+++ BASH_ENV=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ export MANPATH=:
+++ MANPATH=:
++++ /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/libexec/addto MANPATH /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/share/man
+++ export MANPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/share/man:
+++ MANPATH=/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/share/man:
+++ findExec READLINK_CMD /usr/bin/readlink readlink
+++ Nm=READLINK_CMD
+++ confPath=/usr/bin/readlink
+++ execNm=readlink
+++ eval READLINK_CMD=/usr/bin/readlink
++++ READLINK_CMD=/usr/bin/readlink
+++ '[' '!' -x /usr/bin/readlink ']'
+++ unset Nm confPath execNm
+++ findExec PS_CMD /usr/bin/ps ps
+++ Nm=PS_CMD
+++ confPath=/usr/bin/ps
+++ execNm=ps
+++ eval PS_CMD=/usr/bin/ps
++++ PS_CMD=/usr/bin/ps
+++ '[' '!' -x /usr/bin/ps ']'
+++ unset Nm confPath execNm
+++ findExec EXPR_CMD /usr/bin/expr expr
+++ Nm=EXPR_CMD
+++ confPath=/usr/bin/expr
+++ execNm=expr
+++ eval EXPR_CMD=/usr/bin/expr
++++ EXPR_CMD=/usr/bin/expr
+++ '[' '!' -x /usr/bin/expr ']'
+++ unset Nm confPath execNm
+++ findExec BASENAME_CMD /usr/bin/basename basename
+++ Nm=BASENAME_CMD
+++ confPath=/usr/bin/basename
+++ execNm=basename
+++ eval BASENAME_CMD=/usr/bin/basename
++++ BASENAME_CMD=/usr/bin/basename
+++ '[' '!' -x /usr/bin/basename ']'
+++ unset Nm confPath execNm
+++ unset -f findExec
+++ '[' -f /proc/1332412/exe ']'
++++ /usr/bin/readlink /proc/1332412/exe
+++ my_shell=/usr/bin/bash
++++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)'
+++ my_shell=/usr/bin/bash
++++ /usr/bin/basename /usr/bin/bash
+++ my_shell=bash
+++ case ${my_shell} in
+++ '[' -f /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash ']'
+++ . /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash
++++ '[' -z '' ']'
++++ case "$-" in
++++ __lmod_vx=x
++++ '[' -n x ']'
++++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash)
Shell debugging restarted
++++ unset __lmod_vx
+++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7,
netcdf-c/4.9.2, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ python3 tests/run_bindiff_report_test.py
/home/jenkins/workspace/clubb_branch_python/tests/run_bindiff_report_test.py:51: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
  nc.createVariable("time_bnds", "f8", ("time", "bounds"))[:, :] = np.array(
/home/jenkins/workspace/clubb_branch_python/tests/run_bindiff_report_test.py:54: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
  nc.createVariable("signal", "f8", ("time", "column"))[:, :] = np.array(values)
Bindiff CLI exit-code and JSON diagnostic checks passed
+ python3 clubb_python_api/tests/argument_list_enforcer/argument_contract_audit.py
WARNING GENERIC_DISPATCH_WRAPPER::src/CLUBB_core/grid_class.F90::redirect_interpolated_azt_2d: clubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.py::advance_xp2_xpyp -> f2py_zm2zt_2d
  EXTRA:   ['sclr_dim', 'sclr_tol', 'sclr_idx', 'invrs_tau_xp2_zm', 'invrs_tau_c4_zm', 'invrs_tau_c14_zm', 'wm_zm', 'rtm', 'wprtp', 'thlm', 'wpthlp', 'wpthvp', 'um', 'vm', 'wp2', 'wp3', 'upwp', 'vpwp', 'sigma_sqd_w', 'wprtp2', 'wpthlp2', 'wprtpthlp', 'kh_zt', 'rtp2_forcing', 'thlp2_forcing', 'rtpthlp_forcing', 'rho_ds_zm', 'rho_ds_zt', 'invrs_rho_ds_zm', 'thv_ds_zm', 'cloud_frac', 'pdf_implicit_coefs_terms', 'dt', 'fcor_y', 'sclrm', 'wpsclrp', 'wpsclrp2', 'wpsclrprtp', 'wpsclrpthlp', 'lhs_splat_wp2', 'clubb_params', 'nu_vert_res_dep', 'iipdf_type', 'tridiag_solve_method', 'fill_holes_type', 'l_ho_nontrad_coriolis', 'l_min_xp2_from_corr_wx', 'l_c2_cloud_frac', 'l_upwind_xpyp_ta', 'l_godunov_upwind_xpyp_ta', 'l_lmm_stepping', 'l_implemented', 'rtp2', 'thlp2', 'rtpthlp', 'up2', 'vp2', 'sclrp2', 'sclrprtp', 'sclrpthlp', 'err_info']
  MISSING: ['azm']
WARNING GENERIC_DISPATCH_WRAPPER::src/CLUBB_core/matrix_solver_wrapper.F90::tridiag_solve_single_rhs_multiple_lhs: clubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.py::tridiag_solve -> f2py_tridiag_solve_single_rhs_multiple_lhs
  MISSING: ['l_implemented']
WARNING GENERIC_DISPATCH_WRAPPER::src/CLUBB_core/matrix_solver_wrapper.F90::tridiag_solve_multiple_rhs_lhs: clubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.py::tridiag_solve -> f2py_tridiag_solve_multiple_rhs
  MISSING: ['nrhs', 'l_implemented']
WARNING GENERIC_DISPATCH_WRAPPER::src/CLUBB_core/grid_class.F90::redirect_interpolated_azt_2d: clubb_python_api/clubb_python/CLUBB_core/mixing_length.py::diagnose_lscale_from_tau -> f2py_zm2zt_2d
  EXTRA:   ['upwp_sfc', 'vpwp_sfc', 'ddzt_umvm_sqd', 'ice_supersat_frac', 'em', 'ufmin', 'tau_const', 'sfc_elevation', 'lscale_max', 'clubb_params', 'l_e3sm_config', 'l_smooth_heaviside_tau_wpxp', 'brunt_vaisala_freq_sqd_smth', 'ri_zm', 'err_info']
  MISSING: ['azm']
WARNING GENERIC_DISPATCH_WRAPPER::src/CLUBB_core/penta_lu_solver.F90::penta_lu_solve_multiple_rhs_lhs: clubb_python_api/clubb_python/CLUBB_core/penta_lu_solver.py::penta_lu_solve -> f2py_penta_lu_solve_multiple_rhs_lhs
  MISSING: ['nrhs']
WARNING GENERIC_DISPATCH_WRAPPER::src/CLUBB_core/tridiag_lu_solver.F90::tridiag_lu_solve_single_rhs_multiple_lhs: clubb_python_api/clubb_python/CLUBB_core/tridiag_lu_solver.py::tridiag_lu_solve -> f2py_tridiag_lu_solve_single_rhs_multiple_lhs
  MISSING: ['ngrdcol']
WARNING GENERIC_DISPATCH_WRAPPER::src/CLUBB_core/tridiag_lu_solver.F90::tridiag_lu_solve_multiple_rhs_lhs: clubb_python_api/clubb_python/CLUBB_core/tridiag_lu_solver.py::tridiag_lu_solve -> f2py_tridiag_lu_solve_multiple_rhs_lhs
  MISSING: ['nrhs', 'ngrdcol']

Summary:
  GENERIC_DISPATCH_WRAPPER: 7