Console Output
+ export PATH=/home/jenkins/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin
+ PATH=/home/jenkins/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin
+ node --version
v22.23.3
+ bash tests/run_pytests.sh -dash -include_generated --junitxml=/home/jenkins/workspace/clubb_branch_dash/output/tests/pytests/dash.xml --durations=10
Installing uv 0.11.32 in /home/jenkins/workspace/clubb_branch_dash/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_branch_dash/.clubb-python-tools/bin
uv
uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_branch_dash/.venv-python
Downloading cpython-3.12.13-linux-x86_64-gnu (download) (32.6MiB)
Downloaded cpython-3.12.13-linux-x86_64-gnu (download)
Using CPython 3.12.13
Creating virtual environment at: .venv-python
Activate with: source .venv-python/bin/activate
Installing dash requirements into /home/jenkins/workspace/clubb_branch_dash/.venv-python
Using Python 3.12.13 environment at: .venv-python
Resolved 71 packages in 922ms
Downloading pygments (1.2MiB)
Downloading cftime (1.6MiB)
Downloading kiwisolver (1.4MiB)
Downloading plotly (9.5MiB)
Downloading matplotlib (8.4MiB)
Downloading fonttools (5.1MiB)
Downloading cryptography (4.5MiB)
Downloading pillow (6.6MiB)
Downloading pydantic-core (2.0MiB)
Downloading numpy (15.9MiB)
Downloading dash (7.6MiB)
Downloading netcdf4 (9.7MiB)
Downloading meson (1.1MiB)
Downloading scipy (33.7MiB)
Downloaded kiwisolver
Downloaded cftime
Downloaded pydantic-core
Downloaded meson
Downloaded pygments
Downloaded cryptography
Downloaded fonttools
Downloaded pillow
Downloaded dash
Downloaded matplotlib
Downloaded netcdf4
Downloaded numpy
Downloaded plotly
Downloaded scipy
Prepared 71 packages in 2.82s
Installed 71 packages in 94ms
+ annotated-types==0.8.0
+ anyio==4.15.1
+ attrs==26.1.0
+ blinker==1.9.0
+ certifi==2026.7.22
+ cffi==2.1.1
+ cftime==1.6.6
+ charset-normalizer==3.5.2
+ click==8.5.0
+ contourpy==1.4.0
+ cryptography==50.0.2
+ cycler==0.12.1
+ dash==3.4.0
+ dill==0.4.1
+ diskcache==5.6.3
+ flask==3.1.3
+ fonttools==4.66.1
+ h11==0.16.0
+ httpcore==1.0.9
+ httpx==0.28.1
+ httpx-sse==0.4.3
+ idna==3.20
+ importlib-metadata==9.0.1
+ iniconfig==2.3.0
+ itsdangerous==2.2.0
+ jinja2==3.1.6
+ jsonschema==4.26.0
+ jsonschema-specifications==2025.9.1
+ kiwisolver==1.5.1
+ markupsafe==3.0.4
+ matplotlib==3.10.9
+ mcp==1.30.0
+ meson==1.12.1
+ multiprocess==0.70.19
+ narwhals==2.26.0
+ nest-asyncio==1.6.0
+ netcdf4==1.7.4
+ ninja==1.13.2
+ numpy==2.5.3
+ packaging==26.3
+ pillow==12.3.0
+ plotly==6.9.0
+ pluggy==1.6.0
+ psutil==7.2.2
+ pycparser==3.0
+ pydantic==2.13.5
+ pydantic-core==2.46.5
+ pydantic-settings==2.15.0
+ pygments==2.21.0
+ pyjwt==2.15.1
+ pyparsing==3.3.3
+ pytest==9.1.1
+ python-dateutil==2.9.0.post0
+ python-dotenv==1.2.4
+ python-multipart==0.0.32
+ referencing==0.37.0
+ requests==2.34.2
+ retrying==1.4.2
+ rpds-py==2026.9.1
+ scipy==1.18.1
+ setuptools==84.0.0
+ six==1.17.0
+ sse-starlette==3.5.0
+ starlette==1.7.0
+ tabulate==0.10.0
+ typing-extensions==4.16.0
+ typing-inspection==0.4.4
+ urllib3==2.8.0
+ uvicorn==0.54.0
+ werkzeug==3.1.9
+ zipp==4.1.1
Ready: /home/jenkins/workspace/clubb_branch_dash/.venv-python/bin/python
============================= test session starts ==============================
platform linux -- Python 3.12.13, pytest-9.1.1, pluggy-1.6.0
rootdir: /home/jenkins/workspace/clubb_branch_dash
plugins: dash-3.4.0, anyio-4.15.1
collected 527 items
dash_app/pytests/test_activity.py ......... [ 1%]
dash_app/pytests/test_agent_integration.py .............. [ 4%]
dash_app/pytests/test_agent_plot_actions.py ........ [ 5%]
dash_app/pytests/test_agent_services.py ................................ [ 11%]
................. [ 15%]
dash_app/pytests/test_agent_tab_registry.py ...... [ 16%]
dash_app/pytests/test_agent_tuning.py ............ [ 18%]
dash_app/pytests/test_analysis.py ..... [ 19%]
dash_app/pytests/test_app_startup.py .......... [ 21%]
dash_app/pytests/test_atlas.py . [ 21%]
dash_app/pytests/test_bivariate_heatmap.py .. [ 22%]
dash_app/pytests/test_callbacks_runs.py ............ [ 24%]
dash_app/pytests/test_compile_tab_build_status.py ................. [ 27%]
dash_app/pytests/test_custom_plot.py ........ [ 29%]
dash_app/pytests/test_dashboard_activity_labels.py . [ 29%]
dash_app/pytests/test_dashboard_lifecycle.py ... [ 29%]
dash_app/pytests/test_dashboard_manager.py ...... [ 30%]
dash_app/pytests/test_equations.py ... [ 31%]
dash_app/pytests/test_fill_holes_viewer.py .... [ 32%]
dash_app/pytests/test_jax_device.py ............................ [ 37%]
dash_app/pytests/test_mcp_endpoint.py ... [ 38%]
dash_app/pytests/test_misc_tab.py ... [ 38%]
dash_app/pytests/test_netcdf.py ...... [ 39%]
dash_app/pytests/test_output_directory_picker.py ...... [ 40%]
dash_app/pytests/test_output_discovery.py ....... [ 42%]
dash_app/pytests/test_pane_resize.py ... [ 42%]
dash_app/pytests/test_param_disclosures.py ........ [ 44%]
dash_app/pytests/test_pdf_contour_plot.py ...................... [ 48%]
dash_app/pytests/test_performance_polling.py ....... [ 49%]
dash_app/pytests/test_persistence.py ... [ 50%]
dash_app/pytests/test_plot_case_cache.py .......... [ 52%]
dash_app/pytests/test_plot_extraction.py ............................... [ 58%]
[ 58%]
dash_app/pytests/test_plot_grid_updates.py ..... [ 59%]
dash_app/pytests/test_plot_help.py ... [ 59%]
dash_app/pytests/test_plot_tasks.py .......... [ 61%]
dash_app/pytests/test_plot_transitions.py ............. [ 64%]
dash_app/pytests/test_profile_tab.py .............................. [ 69%]
dash_app/pytests/test_profiles.py ...... [ 70%]
dash_app/pytests/test_pyplotgen_export.py ...... [ 72%]
dash_app/pytests/test_pyplotgen_output_handler.py . [ 72%]
dash_app/pytests/test_reports_tab.py ....... [ 73%]
dash_app/pytests/test_run_broker_simplification.py ..................... [ 77%]
[ 77%]
dash_app/pytests/test_run_callbacks_settings.py .............. [ 80%]
dash_app/pytests/test_run_runtime.py .......... [ 82%]
dash_app/pytests/test_runtime.py .. [ 82%]
dash_app/pytests/test_runtime_logging.py ..... [ 83%]
dash_app/pytests/test_runtime_loss_batches.py . [ 83%]
dash_app/pytests/test_sam_3d_reference.py . [ 83%]
dash_app/pytests/test_scm_override.py ...... [ 85%]
dash_app/pytests/test_selected_build.py ..................... [ 88%]
dash_app/pytests/test_state_persistence.py ............. [ 91%]
dash_app/pytests/test_taylor_window_display.py ..... [ 92%]
dash_app/pytests/test_tunable_config_save.py ............... [ 95%]
dash_app/pytests/test_tune_callbacks_settings.py ............. [ 97%]
dash_app/pytests/test_tutorial_tab.py .. [ 98%]
dash_app/pytests/test_two_gaussian_model.py ...... [ 99%]
dash_app/pytests/test_workspace_selection.py .... [100%]
=============================== warnings summary ===============================
dash_app/pytests/test_atlas.py: 49 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_atlas.py:39: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
w_variable[0, level] = w
dash_app/pytests/test_atlas.py: 49 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_atlas.py:40: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
rt_variable[0, level] = rt
dash_app/pytests/test_atlas.py: 49 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_atlas.py:41: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
rc_variable[0, level] = rc
dash_app/pytests/test_fill_holes_viewer.py::test_analysis_reads_direct_before_after_and_hardcoded_threshold
dash_app/pytests/test_fill_holes_viewer.py::test_profile_field_scale_defaults_to_log_and_can_be_linear
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_fill_holes_viewer.py:43: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
before[:] = np.array([[[2.0e-4], [8.0e-4], [1.0e-4]], [[8.0e-4], [1.2e-3], [1.6e-3]]])
dash_app/pytests/test_fill_holes_viewer.py::test_analysis_reads_direct_before_after_and_hardcoded_threshold
dash_app/pytests/test_fill_holes_viewer.py::test_profile_field_scale_defaults_to_log_and_can_be_linear
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_fill_holes_viewer.py:45: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
after[:] = np.array([[[5.0e-4], [8.0e-4], [2.0e-4]], [[8.0e-4], [1.2e-3], [1.6e-3]]])
dash_app/pytests/test_pdf_contour_plot.py: 470 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_pdf_contour_plot.py:87: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
variable[:] = np.full((time_count, height_count, 1), value)
dash_app/pytests/test_plot_case_cache.py::test_hydration_keeps_saved_view_and_scans_once
/home/jenkins/workspace/clubb_branch_dash/dash_app/plot_tab/case_definitions.py:35: DeprecationWarning: ast.Str is deprecated and will be removed in Python 3.14; use ast.Constant instead
legacy_str = getattr(ast, "Str", None)
dash_app/pytests/test_plot_case_cache.py: 4120 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/plot_tab/case_definitions.py:36: DeprecationWarning: ast.Str is deprecated and will be removed in Python 3.14; use ast.Constant instead
if legacy_str is not None and isinstance(node, legacy_str):
dash_app/pytests/test_plot_case_cache.py::test_hydration_keeps_saved_view_and_scans_once
/home/jenkins/workspace/clubb_branch_dash/dash_app/plot_tab/case_definitions.py:39: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead
legacy_num = getattr(ast, "Num", None)
dash_app/pytests/test_plot_case_cache.py: 4120 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/plot_tab/case_definitions.py:40: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead
if legacy_num is not None and isinstance(node, legacy_num):
dash_app/pytests/test_plot_extraction.py: 30 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_plot_extraction.py:35: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
field[:] = np.transpose(cube, [('time', 'zt', 'col').index(d) for d in dims])
dash_app/pytests/test_plot_extraction.py: 30 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_plot_extraction.py:39: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
ds.createVariable('lh_nl_w', 'f8', ('col', 'subcolumn', 'zt', 'time'))[:] = subcolumns.transpose(2, 3, 1, 0)
dash_app/pytests/test_plot_extraction.py: 30 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_plot_extraction.py:40: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
ds.createVariable('lwp', 'f8', ('col', 'time'))[:] = cube[:, 0, :].T
dash_app/pytests/test_plot_extraction.py::test_file_change_invalidates_cached_results[stats0]
dash_app/pytests/test_plot_extraction.py::test_file_change_invalidates_cached_results[stats1]
dash_app/pytests/test_plot_extraction.py::test_file_change_invalidates_cached_results[stats2]
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_plot_extraction.py:134: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
ds.variables['field'][:] = 42.0
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
- generated xml file: /home/jenkins/workspace/clubb_branch_dash/output/tests/pytests/dash.xml -
============================= slowest 10 durations =============================
1.52s call dash_app/pytests/test_plot_tasks.py::test_browser_updates_selection_immediately_and_ignores_stale_results
1.35s call dash_app/pytests/test_agent_services.py::test_mcp_stdio_discovery_and_structured_error_round_trip
1.22s call dash_app/pytests/test_agent_plot_actions.py::test_profile_png_renderer_writes_a_real_png
0.99s call dash_app/pytests/test_plot_case_cache.py::test_background_worker_snapshot_resolves_in_main_process
0.80s call dash_app/pytests/test_plot_tasks.py::test_real_worker_inspects_missing_directory_and_serializes_no_update
0.76s call dash_app/pytests/test_agent_services.py::test_mcp_exposes_closed_world_typed_tools_and_annotations
0.50s call dash_app/pytests/test_fill_holes_viewer.py::test_profile_field_scale_defaults_to_log_and_can_be_linear
0.49s call dash_app/pytests/test_netcdf.py::test_shared_netcdf_consumers_import_as_dashboard_packages
0.45s call dash_app/pytests/test_agent_services.py::test_same_case_submissions_get_distinct_durable_batch_roots
0.45s call dash_app/pytests/test_pdf_contour_plot.py::test_pdf_compare_mode_builds_shared_axis_directory_panels
===================== 527 passed, 8956 warnings in 27.62s ======================
