Console Output
+ NODE_VERSION=22.23.3
+ case "$(uname -m)" in
++ uname -m
+ NODE_ARCH=x64
+ NODE_ARCHIVE=node-v22.23.3-linux-x64.tar.xz
+ mkdir -p .clubb-node-tools
+ cd .clubb-node-tools
+ curl --fail --silent --show-error --location https://nodejs.org/dist/v22.23.3/node-v22.23.3-linux-x64.tar.xz -o node-v22.23.3-linux-x64.tar.xz
+ curl --fail --silent --show-error --location https://nodejs.org/dist/v22.23.3/SHASUMS256.txt -o SHASUMS256.txt
+ grep -F ' node-v22.23.3-linux-x64.tar.xz' SHASUMS256.txt
+ sha256sum --check
node-v22.23.3-linux-x64.tar.xz: OK
+ tar --extract --xz --file=node-v22.23.3-linux-x64.tar.xz --strip-components=1
+ cd /home/jenkins/workspace/clubb_branch_dash
+ export PATH=/home/jenkins/workspace/clubb_branch_dash/.clubb-node-tools/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+ PATH=/home/jenkins/workspace/clubb_branch_dash/.clubb-node-tools/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+ node --version
v22.23.3
+ bash tests/run_pytests.sh -dash -include_generated --junitxml=/home/jenkins/workspace/clubb_branch_dash/output/tests/pytests/dash.xml --durations=10
Installing uv 0.11.32 in /home/jenkins/workspace/clubb_branch_dash/.clubb-python-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_branch_dash/.clubb-python-tools/bin
uv
uvx
everything's installed!
Creating CLUBB virtualenv: /home/jenkins/workspace/clubb_branch_dash/.venv-python
Using CPython 3.12.3 interpreter at: /usr/bin/python3.12
Creating virtual environment at: .venv-python
Activate with: source .venv-python/bin/activate
Installing dash requirements into /home/jenkins/workspace/clubb_branch_dash/.venv-python
Using Python 3.12.3 environment at: .venv-python
Resolved 71 packages in 719ms
Downloading scipy (33.7MiB)
Downloading pydantic-core (2.0MiB)
Downloading dash (7.6MiB)
Downloading netcdf4 (9.7MiB)
Downloading cryptography (4.5MiB)
Downloading fonttools (5.1MiB)
Downloading matplotlib (8.4MiB)
Downloading cftime (1.6MiB)
Downloading plotly (9.5MiB)
Downloading pygments (1.2MiB)
Downloading meson (1.1MiB)
Downloading kiwisolver (1.4MiB)
Downloading numpy (15.9MiB)
Downloading pillow (6.6MiB)
Downloaded kiwisolver
Downloaded cftime
Downloaded pydantic-core
Downloaded meson
Downloaded pygments
Downloaded cryptography
Downloaded fonttools
Downloaded pillow
Downloaded dash
Downloaded netcdf4
Downloaded matplotlib
Downloaded numpy
Downloaded plotly
Downloaded scipy
Prepared 71 packages in 1.80s
Installed 71 packages in 51ms
+ annotated-types==0.8.0
+ anyio==4.15.1
+ attrs==26.1.0
+ blinker==1.9.0
+ certifi==2026.7.22
+ cffi==2.1.1
+ cftime==1.6.6
+ charset-normalizer==3.5.2
+ click==8.5.0
+ contourpy==1.4.0
+ cryptography==50.0.2
+ cycler==0.12.1
+ dash==3.4.0
+ dill==0.4.1
+ diskcache==5.6.3
+ flask==3.1.3
+ fonttools==4.66.1
+ h11==0.16.0
+ httpcore==1.0.9
+ httpx==0.28.1
+ httpx-sse==0.4.3
+ idna==3.20
+ importlib-metadata==9.0.1
+ iniconfig==2.3.0
+ itsdangerous==2.2.0
+ jinja2==3.1.6
+ jsonschema==4.26.0
+ jsonschema-specifications==2025.9.1
+ kiwisolver==1.5.1
+ markupsafe==3.0.4
+ matplotlib==3.10.9
+ mcp==1.30.0
+ meson==1.12.1
+ multiprocess==0.70.19
+ narwhals==2.26.0
+ nest-asyncio==1.6.0
+ netcdf4==1.7.4
+ ninja==1.13.2
+ numpy==2.5.3
+ packaging==26.3
+ pillow==12.3.0
+ plotly==6.9.0
+ pluggy==1.6.0
+ psutil==7.2.2
+ pycparser==3.0
+ pydantic==2.13.5
+ pydantic-core==2.46.5
+ pydantic-settings==2.15.0
+ pygments==2.21.0
+ pyjwt==2.15.1
+ pyparsing==3.3.3
+ pytest==9.1.1
+ python-dateutil==2.9.0.post0
+ python-dotenv==1.2.4
+ python-multipart==0.0.32
+ referencing==0.37.0
+ requests==2.34.2
+ retrying==1.4.2
+ rpds-py==2026.9.1
+ scipy==1.18.1
+ setuptools==84.0.0
+ six==1.17.0
+ sse-starlette==3.5.0
+ starlette==1.7.0
+ tabulate==0.10.0
+ typing-extensions==4.16.0
+ typing-inspection==0.4.4
+ urllib3==2.8.0
+ uvicorn==0.54.0
+ werkzeug==3.1.9
+ zipp==4.1.1
Ready: /home/jenkins/workspace/clubb_branch_dash/.venv-python/bin/python
============================= test session starts ==============================
platform linux -- Python 3.12.3, pytest-9.1.1, pluggy-1.6.0
rootdir: /home/jenkins/workspace/clubb_branch_dash
configfile: pytest.ini
plugins: dash-3.4.0, anyio-4.15.1
collected 526 items
dash_app/pytests/test_activity.py ......... [ 1%]
dash_app/pytests/test_agent_integration.py .............. [ 4%]
dash_app/pytests/test_agent_plot_actions.py ........ [ 5%]
dash_app/pytests/test_agent_services.py ................................ [ 11%]
................ [ 15%]
dash_app/pytests/test_agent_tab_registry.py ...... [ 16%]
dash_app/pytests/test_agent_tuning.py ............ [ 18%]
dash_app/pytests/test_analysis.py ..... [ 19%]
dash_app/pytests/test_app_startup.py .......... [ 21%]
dash_app/pytests/test_atlas.py . [ 21%]
dash_app/pytests/test_bivariate_heatmap.py .. [ 21%]
dash_app/pytests/test_callbacks_runs.py ............ [ 24%]
dash_app/pytests/test_compile_tab_build_status.py ................. [ 27%]
dash_app/pytests/test_custom_plot.py ........ [ 28%]
dash_app/pytests/test_dashboard_activity_labels.py . [ 29%]
dash_app/pytests/test_dashboard_lifecycle.py ... [ 29%]
dash_app/pytests/test_dashboard_manager.py ...... [ 30%]
dash_app/pytests/test_equations.py ... [ 31%]
dash_app/pytests/test_fill_holes_viewer.py .... [ 32%]
dash_app/pytests/test_jax_device.py ............................ [ 37%]
dash_app/pytests/test_mcp_endpoint.py ... [ 38%]
dash_app/pytests/test_misc_tab.py ... [ 38%]
dash_app/pytests/test_netcdf.py ...... [ 39%]
dash_app/pytests/test_output_directory_picker.py ...... [ 40%]
dash_app/pytests/test_output_discovery.py ....... [ 42%]
dash_app/pytests/test_pane_resize.py ... [ 42%]
dash_app/pytests/test_param_disclosures.py ........ [ 44%]
dash_app/pytests/test_pdf_contour_plot.py ...................... [ 48%]
dash_app/pytests/test_performance_polling.py ....... [ 49%]
dash_app/pytests/test_persistence.py ... [ 50%]
dash_app/pytests/test_plot_case_cache.py .......... [ 52%]
dash_app/pytests/test_plot_extraction.py ............................... [ 58%]
[ 58%]
dash_app/pytests/test_plot_grid_updates.py ..... [ 59%]
dash_app/pytests/test_plot_help.py ... [ 59%]
dash_app/pytests/test_plot_tasks.py .......... [ 61%]
dash_app/pytests/test_plot_transitions.py ............. [ 64%]
dash_app/pytests/test_profile_tab.py .............................. [ 69%]
dash_app/pytests/test_profiles.py ...... [ 70%]
dash_app/pytests/test_pyplotgen_export.py ...... [ 72%]
dash_app/pytests/test_pyplotgen_output_handler.py . [ 72%]
dash_app/pytests/test_reports_tab.py ....... [ 73%]
dash_app/pytests/test_run_broker_simplification.py ..................... [ 77%]
[ 77%]
dash_app/pytests/test_run_callbacks_settings.py .............. [ 80%]
dash_app/pytests/test_run_runtime.py .......... [ 82%]
dash_app/pytests/test_runtime.py .. [ 82%]
dash_app/pytests/test_runtime_logging.py ..... [ 83%]
dash_app/pytests/test_runtime_loss_batches.py . [ 83%]
dash_app/pytests/test_sam_3d_reference.py . [ 83%]
dash_app/pytests/test_scm_override.py ...... [ 84%]
dash_app/pytests/test_selected_build.py ..................... [ 88%]
dash_app/pytests/test_state_persistence.py ............. [ 91%]
dash_app/pytests/test_taylor_window_display.py ..... [ 92%]
dash_app/pytests/test_tunable_config_save.py ............... [ 95%]
dash_app/pytests/test_tune_callbacks_settings.py ............. [ 97%]
dash_app/pytests/test_tutorial_tab.py .. [ 98%]
dash_app/pytests/test_two_gaussian_model.py ...... [ 99%]
dash_app/pytests/test_workspace_selection.py .... [100%]
=============================== warnings summary ===============================
dash_app/pytests/test_atlas.py: 49 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_atlas.py:39: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
w_variable[0, level] = w
dash_app/pytests/test_atlas.py: 49 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_atlas.py:40: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
rt_variable[0, level] = rt
dash_app/pytests/test_atlas.py: 49 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_atlas.py:41: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
rc_variable[0, level] = rc
dash_app/pytests/test_fill_holes_viewer.py::test_analysis_reads_direct_before_after_and_hardcoded_threshold
dash_app/pytests/test_fill_holes_viewer.py::test_profile_field_scale_defaults_to_log_and_can_be_linear
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_fill_holes_viewer.py:43: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
before[:] = np.array([[[2.0e-4], [8.0e-4], [1.0e-4]], [[8.0e-4], [1.2e-3], [1.6e-3]]])
dash_app/pytests/test_fill_holes_viewer.py::test_analysis_reads_direct_before_after_and_hardcoded_threshold
dash_app/pytests/test_fill_holes_viewer.py::test_profile_field_scale_defaults_to_log_and_can_be_linear
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_fill_holes_viewer.py:45: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
after[:] = np.array([[[5.0e-4], [8.0e-4], [2.0e-4]], [[8.0e-4], [1.2e-3], [1.6e-3]]])
dash_app/pytests/test_pdf_contour_plot.py: 470 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_pdf_contour_plot.py:87: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
variable[:] = np.full((time_count, height_count, 1), value)
dash_app/pytests/test_plot_case_cache.py::test_hydration_keeps_saved_view_and_scans_once
/home/jenkins/workspace/clubb_branch_dash/dash_app/plot_tab/case_definitions.py:35: DeprecationWarning: ast.Str is deprecated and will be removed in Python 3.14; use ast.Constant instead
legacy_str = getattr(ast, "Str", None)
dash_app/pytests/test_plot_case_cache.py: 4120 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/plot_tab/case_definitions.py:36: DeprecationWarning: ast.Str is deprecated and will be removed in Python 3.14; use ast.Constant instead
if legacy_str is not None and isinstance(node, legacy_str):
dash_app/pytests/test_plot_case_cache.py::test_hydration_keeps_saved_view_and_scans_once
/home/jenkins/workspace/clubb_branch_dash/dash_app/plot_tab/case_definitions.py:39: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead
legacy_num = getattr(ast, "Num", None)
dash_app/pytests/test_plot_case_cache.py: 4120 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/plot_tab/case_definitions.py:40: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead
if legacy_num is not None and isinstance(node, legacy_num):
dash_app/pytests/test_plot_extraction.py: 30 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_plot_extraction.py:35: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
field[:] = np.transpose(cube, [('time', 'zt', 'col').index(d) for d in dims])
dash_app/pytests/test_plot_extraction.py: 30 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_plot_extraction.py:39: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
ds.createVariable('lh_nl_w', 'f8', ('col', 'subcolumn', 'zt', 'time'))[:] = subcolumns.transpose(2, 3, 1, 0)
dash_app/pytests/test_plot_extraction.py: 30 warnings
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_plot_extraction.py:40: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
ds.createVariable('lwp', 'f8', ('col', 'time'))[:] = cube[:, 0, :].T
dash_app/pytests/test_plot_extraction.py::test_file_change_invalidates_cached_results[stats0]
dash_app/pytests/test_plot_extraction.py::test_file_change_invalidates_cached_results[stats1]
dash_app/pytests/test_plot_extraction.py::test_file_change_invalidates_cached_results[stats2]
/home/jenkins/workspace/clubb_branch_dash/dash_app/pytests/test_plot_extraction.py:134: DeprecationWarning: Setting the shape on a NumPy array has been deprecated in NumPy 2.5.
As an alternative, you can create a new view using np.reshape (with copy=False if needed).
ds.variables['field'][:] = 42.0
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
- generated xml file: /home/jenkins/workspace/clubb_branch_dash/output/tests/pytests/dash.xml -
============================= slowest 10 durations =============================
2.92s call dash_app/pytests/test_agent_plot_actions.py::test_profile_png_renderer_writes_a_real_png
1.53s call dash_app/pytests/test_plot_tasks.py::test_browser_updates_selection_immediately_and_ignores_stale_results
0.86s call dash_app/pytests/test_plot_case_cache.py::test_background_worker_snapshot_resolves_in_main_process
0.71s call dash_app/pytests/test_plot_tasks.py::test_real_worker_inspects_missing_directory_and_serializes_no_update
0.70s call dash_app/pytests/test_agent_services.py::test_mcp_exposes_closed_world_typed_tools_and_annotations
0.55s call dash_app/pytests/test_netcdf.py::test_shared_netcdf_consumers_import_as_dashboard_packages
0.45s call dash_app/pytests/test_fill_holes_viewer.py::test_profile_field_scale_defaults_to_log_and_can_be_linear
0.41s call dash_app/pytests/test_pdf_contour_plot.py::test_pdf_compare_mode_builds_shared_axis_directory_panels
0.33s call dash_app/pytests/test_run_broker_simplification.py::test_default_new_scenario_keeps_four_reservations_and_restarts_finished_case
0.32s call dash_app/pytests/test_pdf_contour_plot.py::test_three_gaussian_plot_detects_component_and_uses_absolute_weights
===================== 526 passed, 8956 warnings in 22.69s ======================
