Console Output
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ bash tests/run_pytests.sh -jax_f2py_unit_tests -include_generated -v --durations=15 --junitxml=/home/jenkins/workspace/clubb_branch_jax/output/tests/pytests/jax_f2py_unit_tests.xml
CLUBB JAX runtime:
Environment: /home/jenkins/workspace/clubb_branch_jax/.venv-jax (Python 3.12)
Accelerator: cpu
JAX: 0.11.0 (jaxlib 0.11.0)
Device: cpu:0
============================= test session starts ==============================
platform linux -- Python 3.12.3, pytest-9.1.1, pluggy-1.7.0 -- /home/jenkins/workspace/clubb_branch_jax/.venv-jax/bin/python
cachedir: .pytest_cache
rootdir: /home/jenkins/workspace/clubb_branch_jax
collecting ... collected 104 items
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_Nc_Ncn_eqns_vs_fortran.py::test_Ncnm_bit_to_bit_vs_f2py PASSED [ 0%]
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clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_advance_helper_extras_vs_fortran.py::test_compute_Cx_fnc_Richardson_f2py PASSED [ 5%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_advance_helper_extras_vs_fortran.py::test_calc_xpwp_f2py PASSED [ 6%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_advance_helper_extras_vs_fortran.py::test_stability_and_Ri_f2py PASSED [ 7%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_advance_helper_extras_vs_fortran.py::test_vertical_avg_integral_f2py PASSED [ 8%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_advance_helper_extras_vs_fortran.py::test_brunt_vaisala_f2py PASSED [ 9%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_advance_helper_extras_vs_fortran.py::test_calculate_thlp2_rad_f2py PASSED [ 10%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_advance_helper_extras_vs_fortran.py::test_Lscale_width_vert_avg_f2py PASSED [ 11%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_advance_helper_extras_vs_fortran.py::test_wp23_term_splat_lhs_f2py PASSED [ 12%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_advance_xp3_vs_fortran.py::test_f2py_oracle PASSED [ 13%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_binormal_moments_vs_fortran.py::test_f2py_oracle PASSED [ 14%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_calc_comp_corrs_binormal_vs_fortran.py::test_f2py_oracle PASSED [ 15%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_calc_comp_corrs_binormal_vs_fortran.py::test_smooth_corr_quotient_f2py PASSED [ 16%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_calc_ddzt_umvm_sqd_vs_fortran.py::test_f2py_oracle PASSED [ 17%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_calc_roots_vs_fortran.py::test_f2py_oracle PASSED [ 18%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_calc_wp3_on_wp2_vs_fortran.py::test_f2py_oracle PASSED [ 19%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_calculate_thvm_vs_fortran.py::test_f2py_oracle PASSED [ 20%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_calculate_w_responder_params_vs_fortran.py::test_f2py_oracle PASSED [ 21%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_calendar_vs_fortran.py::test_f2py_oracle PASSED [ 22%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_cholesky_corr_mtx_approx_vs_fortran.py::test_f2py_oracle PASSED [ 23%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_cholesky_factor_vs_fortran.py::test_f2py_oracle PASSED [ 24%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_clip_covar_vs_fortran.py::test_f2py_oracle PASSED [ 25%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_clip_covar_vs_fortran.py::test_clip_covars_denom_f2py PASSED [ 25%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_clip_skewness_vs_fortran.py::test_f2py_oracle PASSED [ 26%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_clip_variance_vs_fortran.py::test_f2py_oracle PASSED [ 27%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_clip_variance_vs_fortran.py::test_clip_rcm_f2py PASSED [ 28%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_close_luhar_pdf_vs_fortran.py::test_f2py_oracle PASSED [ 29%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_close_luhar_pdf_vs_fortran.py::test_ADG1_w_closure_f2py PASSED [ 30%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_close_luhar_pdf_vs_fortran.py::test_ADG1_pdf_driver_f2py PASSED [ 31%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_cloud_drop_sed_vs_fortran.py::test_f2py_oracle PASSED [ 32%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_coefs_semiimpl_vs_fortran.py::test_f2py_oracle PASSED [ 33%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_coefs_semiimpl_vs_fortran.py::test_wpxp2_f2py PASSED [ 34%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_coefs_semiimpl_vs_fortran.py::test_wpxpyp_f2py PASSED [ 35%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_compute_gamma_skw_vs_fortran.py::test_f2py_oracle PASSED [ 36%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_compute_sigma_sqd_w_vs_fortran.py::test_f2py_oracle PASSED [ 37%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_config_flags_complete_vs_fortran.py::test_default_values_match_fortran PASSED [ 38%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_cos_solar_zen_vs_fortran.py::test_f2py_oracle PASSED [ 39%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_diagnose_correlations_vs_fortran.py::test_f2py_oracle PASSED [ 40%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_diagnose_upxp_vs_fortran.py::test_f2py_oracle PASSED [ 41%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_diagnose_xp3_vs_fortran.py::test_f2py_oracle PASSED [ 42%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_diffusion_vs_fortran.py::test_f2py_oracle PASSED [ 43%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_fill_holes_mean_vs_fortran.py::test_fill_holes_vertical_f2py PASSED [ 44%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_fill_holes_mean_vs_fortran.py::test_fill_holes_wp2_from_horz_tke_f2py PASSED [ 45%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_grid_operators_vs_fortran.py::test_f2py_oracle PASSED [ 46%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_grid_operators_vs_fortran.py::test_stretched_grid_operators PASSED [ 47%]
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clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_interpolation_vs_fortran.py::test_plinterp_f2py PASSED [ 52%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_limits_f_x_responder_vs_fortran.py::test_f2py_oracle PASSED [ 53%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_luhar_3d_driver_vs_fortran.py::test_f2py_oracle PASSED [ 54%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_luhar_params_vs_fortran.py::test_f2py_oracle PASSED [ 55%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_ly93_pdf_vs_fortran.py::test_f2py_oracle PASSED [ 56%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_ly93_pdf_vs_fortran.py::test_driver_f2py PASSED [ 57%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mean_adv_vs_fortran.py::test_f2py_oracle PASSED [ 58%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mirror_lower_triangular_vs_fortran.py::test_f2py_oracle PASSED [ 59%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py::test_set_Lscale_max_f2py PASSED [ 60%]
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clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mono_flux_limiter_vs_fortran.py::test_full_limiter_f2py PASSED [ 63%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mono_flux_limiter_vs_fortran.py::test_calc_turb_adv_range_f2py PASSED [ 64%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_new_hybrid_pdf_main_vs_fortran.py::test_f2py_oracle PASSED [ 65%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_new_pdf_main_vs_fortran.py::test_driver_f2py PASSED [ 66%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_new_pdf_vs_fortran.py::test_coef_wp4_f2py PASSED [ 67%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_new_pdf_vs_fortran.py::test_coef_wpxp2_f2py PASSED [ 68%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_new_pdf_vs_fortran.py::test_coef_wp2xp_f2py PASSED [ 69%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_new_pdf_vs_fortran.py::test_new_hybrid_aliases PASSED [ 70%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_new_tsdadg_pdf_vs_fortran.py::test_f2py_oracle PASSED [ 71%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_new_tsdadg_pdf_vs_fortran.py::test_setter_f2py PASSED [ 72%]
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clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_param_names_vs_fortran.py::test_param_names_match_f2py PASSED [ 74%]
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clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_param_names_vs_fortran.py::test_param_values_match_fortran PASSED [ 75%]
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clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_pdf_moment_integrals_vs_fortran.py::test_f2py_oracle PASSED [ 77%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_pdf_utilities_vs_fortran.py::test_mean_stdev_L2N_bit_to_bit PASSED [ 78%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_pdf_utilities_vs_fortran.py::test_corr_NN2NL_NN2LL_calc_corr_chi_x_bit_to_bit PASSED [ 79%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_pdf_utilities_vs_fortran.py::test_corr_chi_eta_rt_thl_roundtrip PASSED [ 80%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_pos_definite_vs_fortran.py::test_f2py_oracle PASSED [ 81%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_pvertinterp_vs_fortran.py::test_f2py_oracle PASSED [ 82%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_rcm_sat_adj_vs_fortran.py::test_f2py_oracle PASSED [ 83%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_remapping_module_vs_fortran.py::test_f2py_oracle PASSED [ 84%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_remapping_ppm_vs_fortran.py::test_f2py_same_grid_identity PASSED [ 85%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_responder_params_vs_fortran.py::test_f2py_oracle PASSED [ 86%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_saturation_vs_fortran.py::test_sat_mixrat_f2py PASSED [ 87%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_setter_var_params_vs_fortran.py::test_f2py_oracle PASSED [ 88%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_sfc_varnce_vs_fortran.py::test_f2py_oracle PASSED [ 89%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_skx_func_vs_fortran.py::test_f2py_oracle PASSED [ 90%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_skx_func_vs_fortran.py::test_LG_2005_ansatz_f2py PASSED [ 91%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_smooth_heaviside_vs_fortran.py::test_f2py_oracle PASSED [ 92%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_solver_vs_fortran.py::test_solver_f2py_oracle PASSED [ 93%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_sponge_damp_xp23_vs_fortran.py::test_f2py_oracle PASSED [ 94%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_sponge_damp_xp23_vs_fortran.py::test_sponge_damp_xm_f2py PASSED [ 95%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_spurious_source_vs_fortran.py::test_f2py_oracle PASSED [ 96%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_sunray_sw_vs_fortran.py::test_f2py_oracle PASSED [ 97%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_w_up_in_cloud_vs_fortran.py::test_f2py_oracle PASSED [ 98%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_xpyp_term_ta_godunov_vs_fortran.py::test_f2py_oracle PASSED [ 99%]
clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_xpyp_term_ta_pdf_vs_fortran.py::test_f2py_oracle PASSED [100%]
- generated xml file: /home/jenkins/workspace/clubb_branch_jax/output/tests/pytests/jax_f2py_unit_tests.xml -
============================= slowest 15 durations =============================
12.44s call clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py::test_calc_Lscale_directly_f2py
12.03s call clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_rcm_sat_adj_vs_fortran.py::test_f2py_oracle
8.56s call clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_cos_solar_zen_vs_fortran.py::test_f2py_oracle
7.55s call clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_interpolation_vs_fortran.py::test_plinterp_f2py
6.89s call clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_remapping_ppm_vs_fortran.py::test_f2py_same_grid_identity
6.03s call clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_remapping_module_vs_fortran.py::test_f2py_oracle
6.00s call clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_cholesky_corr_mtx_approx_vs_fortran.py::test_f2py_oracle
5.51s call clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_new_hybrid_pdf_main_vs_fortran.py::test_f2py_oracle
4.92s call clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_new_pdf_vs_fortran.py::test_new_hybrid_aliases
4.35s call clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_pdf_utilities_vs_fortran.py::test_corr_chi_eta_rt_thl_roundtrip
3.70s call clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_mixing_length_vs_fortran.py::test_diagnose_Lscale_from_tau_f2py
3.56s call clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_cholesky_factor_vs_fortran.py::test_f2py_oracle
2.98s call clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_interpolation_vs_fortran.py::test_f2py_oracle
2.96s call clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_Nc_Ncn_eqns_vs_fortran.py::test_Ncnm_bit_to_bit_vs_f2py
2.71s call clubb_jax/pytests/auto_llm_generated_pytests/f2py_unit_tests/test_diagnose_correlations_vs_fortran.py::test_f2py_oracle
======================= 104 passed in 129.04s (0:02:09) ========================
WARNING: New TSDADG PDF. The variance of w in the 1st PDF component is negative and is being clipped to 0.
sigma_w_1^2 (before clipping) = -89.978350249211630
WARNING: New TSDADG PDF. The variance of thl in the 1st PDF component is negative and is being clipped to 0.
sigma_thl_1^2 (before clipping) = -28.100062298269087
WARNING: New TSDADG PDF. The variance of thl in the 1st PDF component is negative and is being clipped to 0.
sigma_thl_1^2 (before clipping) = -2.3443699986332036
WARNING: New TSDADG PDF. The variance of thl in the 2nd PDF component is negative and is being clipped to 0.
sigma_thl_2^2 (before clipping) = -19.622495050054393
WARNING: New TSDADG PDF. The variance of thl in the 1st PDF component is negative and is being clipped to 0.
sigma_thl_1^2 (before clipping) = -31.067635201597646
