Started by an SCM change743655285cd4ce9d65cec1b44cf2e6e578f4d08fe73655285cd4ce9d65cec1b44cf2e6e578f4d08fe7origin/master3655285cd4ce9d65cec1b44cf2e6e578f4d08fe73655285cd4ce9d65cec1b44cf2e6e578f4d08fe7origin/master76d63a0f595d93dccafcc9e7917c00fe97fd034a35d63a0f595d93dccafcc9e7917c00fe97fd034a35origin/grid_fixesd63a0f595d93dccafcc9e7917c00fe97fd034a35d63a0f595d93dccafcc9e7917c00fe97fd034a35origin/grid_fixes67c5c01fc5da140dc13df06c2919c4f4f5a0318b5fc5c01fc5da140dc13df06c2919c4f4f5a0318b5forigin/changes_to_not_breakc5c01fc5da140dc13df06c2919c4f4f5a0318b5fc5c01fc5da140dc13df06c2919c4f4f5a0318b5forigin/changes_to_not_break601344f8a40d6116af1b567307eb389b4be1009fc41344f8a40d6116af1b567307eb389b4be1009fc4refs/remotes/origin/changes_to_not_break1344f8a40d6116af1b567307eb389b4be1009fc41344f8a40d6116af1b567307eb389b4be1009fc4refs/remotes/origin/changes_to_not_break731d226e398bae00fe10255274a70f3451b5cc7d9e1d226e398bae00fe10255274a70f3451b5cc7d9eorigin/wangara_updates1d226e398bae00fe10255274a70f3451b5cc7d9e1d226e398bae00fe10255274a70f3451b5cc7d9eorigin/wangara_updates118a0049d376a4dc2914b174a313546592d08e5e834a0049d376a4dc2914b174a313546592d08e5e834refs/remotes/origin/mastera0049d376a4dc2914b174a313546592d08e5e834a0049d376a4dc2914b174a313546592d08e5e834refs/remotes/origin/mastera0049d376a4dc2914b174a313546592d08e5e834a0049d376a4dc2914b174a313546592d08e5e834refs/remotes/origin/masterhttps://github.com/larson-group/sam_clubb.githttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/sam_micro_drizzle_intel_test/detail/sam_micro_drizzle_intel_test/118/artifactshttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/sam_micro_drizzle_intel_test/detail/sam_micro_drizzle_intel_test/118/changeshttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/sam_micro_drizzle_intel_test/detail/sam_micro_drizzle_intel_test/118/http://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/sam_micro_drizzle_intel_test/detail/sam_micro_drizzle_intel_test/118/testsfalseSetup LES_KK_microEdit Make FileEdit Default CaseCompileRun SAMfalse#11815797513073772sam_micro_drizzle_intel_test #118118false1189884SUCCESS1635321787038http://carson.math.uwm.edu/jenkins/view/all/job/sam_micro_drizzle_intel_test/118/diffusion.F9059c90454cd1a93522940f998c123795db4f23b171635271688000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comUncommenting diffusion.F90 k=1 lines again to fix Oracle uninit var test. I've updated the accompanying note to state clearly that the lines have no effect on model output, but I guess we need to keep the lines to avoid uninitialized variables. 2021-10-26 13:08:08 -050059c90454cd1a93522940f998c123795db4f23b17Uncommenting diffusion.F90 k=1 lines again to fix Oracle uninit var test. I've updated the accompanying note to state clearly that the lines have no effect on model output, but I guess we need to keep the lines to avoid uninitialized variables.editdiffusion.F90githttp://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephensfalseStarted by an SCM change743655285cd4ce9d65cec1b44cf2e6e578f4d08fe73655285cd4ce9d65cec1b44cf2e6e578f4d08fe7origin/master3655285cd4ce9d65cec1b44cf2e6e578f4d08fe73655285cd4ce9d65cec1b44cf2e6e578f4d08fe7origin/master76d63a0f595d93dccafcc9e7917c00fe97fd034a35d63a0f595d93dccafcc9e7917c00fe97fd034a35origin/grid_fixesd63a0f595d93dccafcc9e7917c00fe97fd034a35d63a0f595d93dccafcc9e7917c00fe97fd034a35origin/grid_fixes67c5c01fc5da140dc13df06c2919c4f4f5a0318b5fc5c01fc5da140dc13df06c2919c4f4f5a0318b5forigin/changes_to_not_breakc5c01fc5da140dc13df06c2919c4f4f5a0318b5fc5c01fc5da140dc13df06c2919c4f4f5a0318b5forigin/changes_to_not_break601344f8a40d6116af1b567307eb389b4be1009fc41344f8a40d6116af1b567307eb389b4be1009fc4refs/remotes/origin/changes_to_not_break1344f8a40d6116af1b567307eb389b4be1009fc41344f8a40d6116af1b567307eb389b4be1009fc4refs/remotes/origin/changes_to_not_break731d226e398bae00fe10255274a70f3451b5cc7d9e1d226e398bae00fe10255274a70f3451b5cc7d9eorigin/wangara_updates1d226e398bae00fe10255274a70f3451b5cc7d9e1d226e398bae00fe10255274a70f3451b5cc7d9eorigin/wangara_updates1195aa293576277d35cb406ce45fe485cfd2ab89ea55aa293576277d35cb406ce45fe485cfd2ab89ea5refs/remotes/origin/master5aa293576277d35cb406ce45fe485cfd2ab89ea55aa293576277d35cb406ce45fe485cfd2ab89ea5refs/remotes/origin/master5aa293576277d35cb406ce45fe485cfd2ab89ea55aa293576277d35cb406ce45fe485cfd2ab89ea5refs/remotes/origin/masterhttps://github.com/larson-group/sam_clubb.gitfalse#11916104643073772sam_micro_drizzle_intel_test #119119false1199954SUCCESS1635408188568http://carson.math.uwm.edu/jenkins/view/all/job/sam_micro_drizzle_intel_test/119/SRC/SGS_CLUBB/clubb_sgs.F900fac7162e55c6478ec570b1b4186d0eb51be59831635369322000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comUpdating for changes to CLUBB. See https://github.com/larson-group/clubb/pull/968. 2021-10-27 16:15:22 -05000fac7162e55c6478ec570b1b4186d0eb51be5983Updating for changes to CLUBB. See https://github.com/larson-group/clubb/pull/968.editSRC/SGS_CLUBB/clubb_sgs.F90advance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90bda6b42375dfc09907e7f9b37719b0d149f456711635369371000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding code wrapped in a flag (l_use_tke_in_K_dfsn) to use u_i'u_i' in the wp2 and wp3 eddy diffusion terms, instead of just wp2 or wp3. Relevant to CLUBB issue #920. Results are b4b when the flag is turned off, which it currently is. 2021-10-27 16:16:11 -0500bda6b42375dfc09907e7f9b37719b0d149f45671Adding code wrapped in a flag (l_use_tke_in_K_dfsn) to use u_i'u_i' in the wp2 and wp3 eddy diffusion terms, instead of just wp2 or wp3. Relevant to CLUBB issue #920.editadvance_wp2_wp3_module.F90editmodel_flags.F90editclubb_api_module.F90editadvance_clubb_core_module.F90configurable_model_flags.in12ac897f71f006b5a4d58ec4184ff58548edafd71635369371000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comAdding code wrapped in a flag (l_use_tke_in_K_dfsn) to use u_i'u_i' in the wp2 and wp3 eddy diffusion terms, instead of just wp2 or wp3. Relevant to CLUBB issue #920. Results are b4b when the flag is turned off, which it currently is. 2021-10-27 16:16:11 -050012ac897f71f006b5a4d58ec4184ff58548edafd7Adding code wrapped in a flag (l_use_tke_in_K_dfsn) to use u_i'u_i' in the wp2 and wp3 eddy diffusion terms, instead of just wp2 or wp3. Relevant to CLUBB issue #920.editconfigurable_model_flags.inadvance_wp2_wp3_module.F90advance_clubb_core_module.F90model_flags.F90clubb_api_module.F90fecf90bda798d6330f0c3982e5f24ef5dce274a31635369371000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUpdates as requested to the l_use_tke_in_K_dfsn code: - The name of the flag is changed to l_use_tke_in_wp2_wp3_K_dfsn - Comments are added to the main pieces of code in advance_wp2_wp3 - The flag is added to the "compatible_r8029" configurable flags file. See this comment https://github.com/larson-group/clubb/issues/920#issuecomment-931446401 and following for more information. 2021-10-27 16:16:11 -0500fecf90bda798d6330f0c3982e5f24ef5dce274a3Updates as requested to the l_use_tke_in_K_dfsn code:editadvance_clubb_core_module.F90editadvance_wp2_wp3_module.F90editclubb_api_module.F90editmodel_flags.F90configurable_model_flags.in6cc56f4656c364acfd417735166741345141a0491635369371000http://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens8259519056+bstephens82@users.noreply.github.comUpdates as requested to the l_use_tke_in_K_dfsn code: - The name of the flag is changed to l_use_tke_in_wp2_wp3_K_dfsn - Comments are added to the main pieces of code in advance_wp2_wp3 - The flag is added to the "compatible_r8029" configurable flags file. See this comment https://github.com/larson-group/clubb/issues/920#issuecomment-931446401 and following for more information. 2021-10-27 16:16:11 -05006cc56f4656c364acfd417735166741345141a049Updates as requested to the l_use_tke_in_K_dfsn code:editconfigurable_model_flags.ingithttp://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephenshttp://carson.math.uwm.edu/jenkins/user/59519056+bstephens8259519056+bstephens82false120http://carson.math.uwm.edu/jenkins/view/all/job/sam_micro_drizzle_intel_test/120/118http://carson.math.uwm.edu/jenkins/view/all/job/sam_micro_drizzle_intel_test/118/Started by an SCM change743655285cd4ce9d65cec1b44cf2e6e578f4d08fe73655285cd4ce9d65cec1b44cf2e6e578f4d08fe7origin/master3655285cd4ce9d65cec1b44cf2e6e578f4d08fe73655285cd4ce9d65cec1b44cf2e6e578f4d08fe7origin/master76d63a0f595d93dccafcc9e7917c00fe97fd034a35d63a0f595d93dccafcc9e7917c00fe97fd034a35origin/grid_fixesd63a0f595d93dccafcc9e7917c00fe97fd034a35d63a0f595d93dccafcc9e7917c00fe97fd034a35origin/grid_fixes67c5c01fc5da140dc13df06c2919c4f4f5a0318b5fc5c01fc5da140dc13df06c2919c4f4f5a0318b5forigin/changes_to_not_breakc5c01fc5da140dc13df06c2919c4f4f5a0318b5fc5c01fc5da140dc13df06c2919c4f4f5a0318b5forigin/changes_to_not_break601344f8a40d6116af1b567307eb389b4be1009fc41344f8a40d6116af1b567307eb389b4be1009fc4refs/remotes/origin/changes_to_not_break1344f8a40d6116af1b567307eb389b4be1009fc41344f8a40d6116af1b567307eb389b4be1009fc4refs/remotes/origin/changes_to_not_break731d226e398bae00fe10255274a70f3451b5cc7d9e1d226e398bae00fe10255274a70f3451b5cc7d9eorigin/wangara_updates1d226e398bae00fe10255274a70f3451b5cc7d9e1d226e398bae00fe10255274a70f3451b5cc7d9eorigin/wangara_updates117605e7d8c7db6f94adb67988f3aca7c09ee0bbfcd605e7d8c7db6f94adb67988f3aca7c09ee0bbfcdrefs/remotes/origin/master605e7d8c7db6f94adb67988f3aca7c09ee0bbfcd605e7d8c7db6f94adb67988f3aca7c09ee0bbfcdrefs/remotes/origin/master605e7d8c7db6f94adb67988f3aca7c09ee0bbfcd605e7d8c7db6f94adb67988f3aca7c09ee0bbfcdrefs/remotes/origin/masterhttps://github.com/larson-group/sam_clubb.gitfalse#11717609753073772sam_micro_drizzle_intel_test #117117false1179814SUCCESS1634976191208http://carson.math.uwm.edu/jenkins/view/all/job/sam_micro_drizzle_intel_test/117/mixing_length.F90advance_wp2_wp3_module.F90advance_xp2_xpyp_module.F90diffusion.F90model_flags.F90advance_xm_wpxp_module.F90advance_windm_edsclrm_module.F902ee6d2a1e31e43bca3e03a406917c4454cb71e671634935501000http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensbenjamin.andrew.stephens@gmail.comThese updates incorporate some of Shixuan Zhang's changes, including: (1) upwind scheme for the eddy diffusion code, which Shixuan says does not make a huge difference; and (2) l_smooth_heaviside_tau_wpxp flag in the mixing_length.F90 code, which is intended to give smoother results. Both of the flags for these changes are turned off, but these updates are BIT_CHANGING because of some minor changes to the way that factors of rho_ds_* and invrs_rho_ds_* are handled going into the diffusion.F90 subroutines. Most cases look identical in pyplotgen, but sensitive cases like arm_97 and rico look slightly different. These changes were originally in pull request #962, but because of conflicts with the master branch code base that developed, they could not be rebased and merged, so I incorporated them into this new commit. 2021-10-22 15:45:01 -05002ee6d2a1e31e43bca3e03a406917c4454cb71e67These updates incorporate some of Shixuan Zhang's changes, including:editmodel_flags.F90editadvance_xp2_xpyp_module.F90editmixing_length.F90editadvance_windm_edsclrm_module.F90editadvance_wp2_wp3_module.F90editdiffusion.F90editadvance_xm_wpxp_module.F90githttp://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephensbenjamin.andrew.stephensfalse118http://carson.math.uwm.edu/jenkins/view/all/job/sam_micro_drizzle_intel_test/118/116http://carson.math.uwm.edu/jenkins/view/all/job/sam_micro_drizzle_intel_test/116/