Started by an SCM change
Obtained jenkins_tests/sam_clubb_build/Jenkinsfile from git https://github.com/larson-group/sam_clubb.git
Running in Durability level: MAX_SURVIVABILITY
[Pipeline] Start of Pipeline
[Pipeline] node
Running on Jenkins in /home/jenkins/workspace/sam_clubb_pgi_build
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Declarative: Checkout SCM)
[Pipeline] checkout
The recommended git tool is: git
Cloning the remote Git repository
Cloning repository https://github.com/larson-group/sam_clubb.git
 > git init /home/jenkins/workspace/sam_clubb_pgi_build # timeout=10
Fetching upstream changes from https://github.com/larson-group/sam_clubb.git
 > git --version # timeout=10
 > git --version # 'git version 1.8.3.1'
using GIT_ASKPASS to set credentials THe key used by the system for the tests
 > git fetch --tags --progress https://github.com/larson-group/sam_clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/larson-group/sam_clubb.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision e8ce6a9ebefe81d0a044e546be30e4f63d21ab36 (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f e8ce6a9ebefe81d0a044e546be30e4f63d21ab36 # timeout=10
Commit message: "Removing l_lh_importance_sampling flag from the DYCOMS_RF02 "prm" file and setting things up so that flag is always read from configurable_model_flags.in.  The flag has the same setting either way so this is just cleaner."
 > git rev-list --no-walk 6d5826834e3fe08eb910ee8e71028426ef8c3049 # timeout=10
[Pipeline] }
[Pipeline] // stage
[Pipeline] withEnv
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Edit Makefile)
[Pipeline] sh
+ sed -i 's/FFLAGS += -I.*/FFLAGS += -I${INC_MPI} -I${INC_NETCDF} -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART/g' Makefile
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Edit Default Case)
[Pipeline] sh
+ sed -i 's/nstop.*/nstop   = 6,/g' DYCOMS_RF02/prm
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Compile)
[Pipeline] sh
+ ./Build
if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_2D ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_2D
mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_2D
if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_3D ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_3D
mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_3D
if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOMENTS ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOMENTS
mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOMENTS
if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_STAT ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_STAT
mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_STAT
if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOVIES ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOVIES
mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOVIES
if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/RESTART ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/RESTART
mkdir /home/jenkins/workspace/sam_clubb_pgi_build/RESTART
if ! ( -d /home/jenkins/workspace/sam_clubb_pgi_build/OBJ ) mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OBJ
mkdir /home/jenkins/workspace/sam_clubb_pgi_build/OBJ
if ! ( -d OUT_2D ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_2D OUT_2D
if ! ( -d OUT_3D ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_3D OUT_3D
if ! ( -d OUT_MOMENTS ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOMENTS OUT_MOMENTS
if ! ( -d OUT_STAT ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_STAT OUT_STAT
if ! ( -d OUT_MOVIES ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OUT_MOVIES OUT_MOVIES
if ! ( -d RESTART ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/RESTART RESTART
if ! ( -d OBJ ) ln -s /home/jenkins/workspace/sam_clubb_pgi_build/OBJ OBJ
cat
if ( -e /home/jenkins/workspace/sam_clubb_pgi_build/OBJ/MICRO_RAD_OPTIONS ) then
mv -f MICRO_RAD_OPTIONS.new /home/jenkins/workspace/sam_clubb_pgi_build/OBJ/MICRO_RAD_OPTIONS
cd /home/jenkins/workspace/sam_clubb_pgi_build/OBJ
if ( ! ( -e Filepath ) ) then
cat
endif
gmake -j4 -f /home/jenkins/workspace/sam_clubb_pgi_build/Makefile
cat: Srcfiles: No such file or directory
/home/jenkins/workspace/sam_clubb_pgi_build/SRC/SCRIPT/mkSrcfiles > Srcfiles
/home/jenkins/workspace/sam_clubb_pgi_build/SRC/SCRIPT/mkDepends Filepath Srcfiles > Depends
/opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/bin/mpif90 -c -Mfreeform  -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/include -I/usr/local/NETCDF-Fortran-4.4.5-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/sam_clubb_pgi_build/SRC/CLUBB/model_flags.F90;
/opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/bin/mpif90 -c -Mfreeform  -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/include -I/usr/local/NETCDF-Fortran-4.4.5-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/sam_clubb_pgi_build/SRC/CLUBB/error_code.F90;
/opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/bin/mpif90 -c -Mfreeform  -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/include -I/usr/local/NETCDF-Fortran-4.4.5-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART  /home/jenkins/workspace/sam_clubb_pgi_build/SRC/CLUBB/clubb_precision.F90;
/bin/sh: /opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/bin/mpif90: No such file or directory
/opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/bin/mpif90 -c -Mfixed  -g -C -O1 -Kieee -Mcache_align -Ktrap=fp -Mstandard -traceback -I/opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/include -I/usr/local/NETCDF-Fortran-4.4.5-pgi/include -DCLUBB -DCLUBB_REAL_TYPE=8 -DNETCDF -DUWM_STATS -DUWM_MISC -DUWM_MICRO_CHANGES -DMICRO_RESTART /home/jenkins/workspace/sam_clubb_pgi_build/SRC/SIMULATORS/MISR_simulator.f
gmake: /opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/bin/mpif90: Command not found
/bin/sh: /opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/bin/mpif90: No such file or directory
gmake: *** [/home/jenkins/workspace/sam_clubb_pgi_build/Makefile:696: model_flags.o] Error 127
gmake: *** Waiting for unfinished jobs....
gmake: *** [/home/jenkins/workspace/sam_clubb_pgi_build/Makefile:696: error_code.o] Error 127
gmake: *** [/home/jenkins/workspace/sam_clubb_pgi_build/Makefile:698: MISR_simulator.o] Error 127
/bin/sh: /opt/pgi/linux86-64/2019/mpi/openmpi-3.1.3/bin/mpif90: No such file or directory
gmake: *** [/home/jenkins/workspace/sam_clubb_pgi_build/Makefile:696: clubb_precision.o] Error 127
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Run SAM)
Stage "Run SAM" skipped due to earlier failure(s)
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Declarative: Post Actions)
[Pipeline] cleanWs
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] done
[Pipeline] emailext
Sending email to: messnermet@uwm.edu
[Pipeline] }
[Pipeline] // stage
[Pipeline] }
[Pipeline] // withEnv
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
ERROR: script returned exit code 2
Finished: FAILURE