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- Added tunable parameter bv_efold
- Removed extraneous use statement in src/CLUBB_core/advance_xm_wpxp_module.F90
- Removed obsolete flag l_update_pressure from input/tunable_parameters_Lscale/configurable_model_flags.in
- Changed tmp_calc_min -&gt; tmp_calc in src/CLUBB_core/advance_helper_module.F90
</comment><date>2023-06-27 18:37:17 -0500</date><id>20ca5caead8ec3ad50ac7b996339efbcc48a6412</id><msg>CLUBB ticket #1069: (#1092)</msg><path><editType>edit</editType><file>parameter_indices.F90</file></path><path><editType>edit</editType><file>clubb_api_module.F90</file></path><path><editType>edit</editType><file>advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>advance_xm_wpxp_module.F90</file></path><path><editType>edit</editType><file>parameters_tunable.F90</file></path><path><editType>edit</editType><file>advance_helper_module.F90</file></path><path><editType>edit</editType><file>mixing_length.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>tunable_parameters.in</affectedPath><commitId>e35cb4b162ef470d738d15bda20b2067721ac0b8</commitId><timestamp>1687909037000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>CLUBB ticket #1069: (#1092)

- Added tunable parameter bv_efold
- Removed extraneous use statement in src/CLUBB_core/advance_xm_wpxp_module.F90
- Removed obsolete flag l_update_pressure from input/tunable_parameters_Lscale/configurable_model_flags.in
- Changed tmp_calc_min -&gt; tmp_calc in src/CLUBB_core/advance_helper_module.F90
</comment><date>2023-06-27 18:37:17 -0500</date><id>e35cb4b162ef470d738d15bda20b2067721ac0b8</id><msg>CLUBB ticket #1069: (#1092)</msg><path><editType>edit</editType><file>tunable_parameters.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>SRC/SGS_CLUBB/clubb_sgs.F90</affectedPath><commitId>919d552ce1c42bb871387acfa843579b984b81da</commitId><timestamp>1688069190000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@users.noreply.github.com</authorEmail><comment>Added bv_efold changes for CLUBB API calls
</comment><date>2023-06-29 15:06:30 -0500</date><id>919d552ce1c42bb871387acfa843579b984b81da</id><msg>Added bv_efold changes for CLUBB API calls</msg><path><editType>edit</editType><file>SRC/SGS_CLUBB/clubb_sgs.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>advance_clubb_core_module.F90</affectedPath><commitId>42253d9234a3c885d4c8017fa21efee44b8d3f80</commitId><timestamp>1688584676000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens</absoluteUrl><fullName>benjamin.andrew.stephens</fullName></author><authorEmail>benjamin.andrew.stephens@gmail.com</authorEmail><comment>Changing "Fnc" to "fnc" for consistency and easy search.
</comment><date>2023-07-05 14:17:56 -0500</date><id>42253d9234a3c885d4c8017fa21efee44b8d3f80</id><msg>Changing "Fnc" to "fnc" for consistency and easy search.</msg><path><editType>edit</editType><file>advance_clubb_core_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>mixing_length.F90</affectedPath><affectedPath>advance_xp2_xpyp_module.F90</affectedPath><affectedPath>advance_clubb_core_module.F90</affectedPath><affectedPath>clip_explicit.F90</affectedPath><affectedPath>advance_xm_wpxp_module.F90</affectedPath><affectedPath>pdf_closure_module.F90</affectedPath><affectedPath>advance_windm_edsclrm_module.F90</affectedPath><commitId>a10584a92f2734f4671151e039920a780f1ae1c1</commitId><timestamp>1688611277000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Memory usage optimizations (#1091)

* Fixing merge conflict

* Fixing a bug.

* Restoring correct default flag value

* Undoing changes that push stats variables into pdf_closure. That change may be included in a small future refactoring.

* Making same sclr_dim changes to hydromet_dim
</comment><date>2023-07-05 21:41:17 -0500</date><id>a10584a92f2734f4671151e039920a780f1ae1c1</id><msg>Memory usage optimizations (#1091)</msg><path><editType>edit</editType><file>clip_explicit.F90</file></path><path><editType>edit</editType><file>pdf_closure_module.F90</file></path><path><editType>edit</editType><file>advance_windm_edsclrm_module.F90</file></path><path><editType>edit</editType><file>advance_xp2_xpyp_module.F90</file></path><path><editType>edit</editType><file>advance_xm_wpxp_module.F90</file></path><path><editType>edit</editType><file>advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>mixing_length.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>SRC/SGS_CLUBB/clubb_sgs.F90</affectedPath><commitId>4fc849e5411ca3918dfb306c5d93d6c5a82b1b15</commitId><timestamp>1689031950000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Making compatible with latest clubb changes.
</comment><date>2023-07-10 18:32:30 -0500</date><id>4fc849e5411ca3918dfb306c5d93d6c5a82b1b15</id><msg>Making compatible with latest clubb changes.</msg><path><editType>edit</editType><file>SRC/SGS_CLUBB/clubb_sgs.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>diffusion.F90</affectedPath><affectedPath>clubb_api_module.F90</affectedPath><affectedPath>clip_explicit.F90</affectedPath><affectedPath>advance_xm_wpxp_module.F90</affectedPath><affectedPath>grid_class.F90</affectedPath><affectedPath>turbulent_adv_pdf.F90</affectedPath><affectedPath>advance_windm_edsclrm_module.F90</affectedPath><affectedPath>advance_helper_module.F90</affectedPath><affectedPath>mono_flux_limiter.F90</affectedPath><affectedPath>mixing_length.F90</affectedPath><affectedPath>advance_wp2_wp3_module.F90</affectedPath><affectedPath>advance_xp2_xpyp_module.F90</affectedPath><affectedPath>advance_clubb_core_module.F90</affectedPath><affectedPath>mean_adv.F90</affectedPath><affectedPath>fill_holes.F90</affectedPath><affectedPath>adg1_adg2_3d_luhar_pdf.F90</affectedPath><affectedPath>sigma_sqd_w_module.F90</affectedPath><affectedPath>interpolation.F90</affectedPath><affectedPath>matrix_solver_wrapper.F90</affectedPath><affectedPath>sfc_varnce_module.F90</affectedPath><commitId>08cf4c792a67a0b4866c749b34a4ac7a987a3198</commitId><timestamp>1689032527000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Openacc tweaks and cleanup (#1097)

* Chaning acc declare statements to acc enter data statement

* Making acc statements more consistent

* Making lapack useable while using openacc. Lapack is still run on the CPU

* Updating setup_clubb_core to now accept clubb_config_flags as an input, and adding warning in case clubb is running with lapack but was compiled with openacc.
</comment><date>2023-07-10 18:42:07 -0500</date><id>08cf4c792a67a0b4866c749b34a4ac7a987a3198</id><msg>Openacc tweaks and cleanup (#1097)</msg><path><editType>edit</editType><file>mixing_length.F90</file></path><path><editType>edit</editType><file>advance_wp2_wp3_module.F90</file></path><path><editType>edit</editType><file>sfc_varnce_module.F90</file></path><path><editType>edit</editType><file>turbulent_adv_pdf.F90</file></path><path><editType>edit</editType><file>advance_windm_edsclrm_module.F90</file></path><path><editType>edit</editType><file>interpolation.F90</file></path><path><editType>edit</editType><file>advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>grid_class.F90</file></path><path><editType>edit</editType><file>clubb_api_module.F90</file></path><path><editType>edit</editType><file>clip_explicit.F90</file></path><path><editType>edit</editType><file>matrix_solver_wrapper.F90</file></path><path><editType>edit</editType><file>advance_helper_module.F90</file></path><path><editType>edit</editType><file>mean_adv.F90</file></path><path><editType>edit</editType><file>adg1_adg2_3d_luhar_pdf.F90</file></path><path><editType>edit</editType><file>fill_holes.F90</file></path><path><editType>edit</editType><file>advance_xp2_xpyp_module.F90</file></path><path><editType>edit</editType><file>mono_flux_limiter.F90</file></path><path><editType>edit</editType><file>advance_xm_wpxp_module.F90</file></path><path><editType>edit</editType><file>sigma_sqd_w_module.F90</file></path><path><editType>edit</editType><file>diffusion.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>mean_adv.F90</affectedPath><commitId>40e8eb850e5cc930b2f734acf3504fb8d9e340a5</commitId><timestamp>1689430804000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Loop to `nz-1` instead of `nz` because upper boundary condition

is set in the lines immediately below.
</comment><date>2023-07-15 09:20:04 -0500</date><id>40e8eb850e5cc930b2f734acf3504fb8d9e340a5</id><msg>Loop to `nz-1` instead of `nz` because upper boundary condition</msg><path><editType>edit</editType><file>mean_adv.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>diffusion.F90</affectedPath><affectedPath>clip_semi_implicit.F90</affectedPath><affectedPath>advance_xm_wpxp_module.F90</affectedPath><affectedPath>clip_explicit.F90</affectedPath><affectedPath>clubb_api_module.F90</affectedPath><affectedPath>numerical_check.F90</affectedPath><affectedPath>grid_class.F90</affectedPath><affectedPath>calc_roots.F90</affectedPath><affectedPath>penta_lu_solver.F90</affectedPath><affectedPath>advance_windm_edsclrm_module.F90</affectedPath><affectedPath>turbulent_adv_pdf.F90</affectedPath><affectedPath>mono_flux_limiter.F90</affectedPath><affectedPath>advance_helper_module.F90</affectedPath><affectedPath>advance_wp2_wp3_module.F90</affectedPath><affectedPath>advance_xp2_xpyp_module.F90</affectedPath><affectedPath>advance_clubb_core_module.F90</affectedPath><affectedPath>advance_xp3_module.F90</affectedPath><affectedPath>tridiag_lu_solver.F90</affectedPath><affectedPath>mean_adv.F90</affectedPath><affectedPath>fill_holes.F90</affectedPath><affectedPath>adg1_adg2_3d_luhar_pdf.F90</affectedPath><affectedPath>corr_varnce_module.F90</affectedPath><commitId>1238826836d00367458527d254d2b3c9d7f87e93</commitId><timestamp>1689730027000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Openacc tweaks and cleanup 2 (#1099)

* Making all end parallel directives specify end loop

* Replacing last acc declare in a procedure with acc enter/exit data commands

* Removing pure declarations, turns out they dont really improve performance and openmp isn't allowed within them.

* Adding explicit directives to penta_lu and tridiag_lu, as opposed to the previously used kernels directive. Also splitting up a loop to improve GPU performance.

* Splitting up a couple loops for performance reasons.

* Missed one somehow
</comment><date>2023-07-18 20:27:07 -0500</date><id>1238826836d00367458527d254d2b3c9d7f87e93</id><msg>Openacc tweaks and cleanup 2 (#1099)</msg><path><editType>edit</editType><file>tridiag_lu_solver.F90</file></path><path><editType>edit</editType><file>advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>advance_windm_edsclrm_module.F90</file></path><path><editType>edit</editType><file>mean_adv.F90</file></path><path><editType>edit</editType><file>grid_class.F90</file></path><path><editType>edit</editType><file>fill_holes.F90</file></path><path><editType>edit</editType><file>advance_xm_wpxp_module.F90</file></path><path><editType>edit</editType><file>mono_flux_limiter.F90</file></path><path><editType>edit</editType><file>advance_helper_module.F90</file></path><path><editType>edit</editType><file>calc_roots.F90</file></path><path><editType>edit</editType><file>numerical_check.F90</file></path><path><editType>edit</editType><file>advance_xp3_module.F90</file></path><path><editType>edit</editType><file>clip_explicit.F90</file></path><path><editType>edit</editType><file>diffusion.F90</file></path><path><editType>edit</editType><file>corr_varnce_module.F90</file></path><path><editType>edit</editType><file>turbulent_adv_pdf.F90</file></path><path><editType>edit</editType><file>clip_semi_implicit.F90</file></path><path><editType>edit</editType><file>adg1_adg2_3d_luhar_pdf.F90</file></path><path><editType>edit</editType><file>advance_xp2_xpyp_module.F90</file></path><path><editType>edit</editType><file>advance_wp2_wp3_module.F90</file></path><path><editType>edit</editType><file>penta_lu_solver.F90</file></path><path><editType>edit</editType><file>clubb_api_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>Skx_module.F90</affectedPath><affectedPath>advance_xp2_xpyp_module.F90</affectedPath><affectedPath>mean_adv.F90</affectedPath><commitId>e9ae50fd67886661f7d03ab3549044e5c2c9517a</commitId><timestamp>1690323761000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Bit changing changes (#1104)

* Moving functions called inside loops to their own 2D subroutines. This is for performance, but is also BIT_CHANGING.

* Correct range of values to calculate for term_dp1_lhs

* Comments and cleanup

* Slight change to Skx_func, this is mathematically equivalent but BIT_CHANGING. This is faster on GPUs, and doesn't seem to have a signficiant impact on CPU performance.

* Introducing wp_coef and wp_coef_zt to reduce needed computations. This changes order of operations, so it is BIT_CHANGING.
</comment><date>2023-07-25 17:22:41 -0500</date><id>e9ae50fd67886661f7d03ab3549044e5c2c9517a</id><msg>Bit changing changes (#1104)</msg><path><editType>edit</editType><file>Skx_module.F90</file></path><path><editType>edit</editType><file>advance_xp2_xpyp_module.F90</file></path><path><editType>edit</editType><file>mean_adv.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>advance_xp2_xpyp_module.F90</affectedPath><commitId>6fa34ce2d5ff0c26b7dcf4fed129a8d32ce7dc69</commitId><timestamp>1690679815000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Adding wp_coef and wp_coef_zt to acc data statements.
</comment><date>2023-07-29 20:16:55 -0500</date><id>6fa34ce2d5ff0c26b7dcf4fed129a8d32ce7dc69</id><msg>Adding wp_coef and wp_coef_zt to acc data statements.</msg><path><editType>edit</editType><file>advance_xp2_xpyp_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>mixing_length.F90</affectedPath><affectedPath>advance_clubb_core_module.F90</affectedPath><affectedPath>advance_helper_module.F90</affectedPath><affectedPath>stats_zt_module.F90</affectedPath><commitId>c0fdc2b307c5f63608c72f08ab493fce4516a741</commitId><timestamp>1690921282000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Bv efold bit changing (#1095)

BIT_CHANGING! Added e-folding code for mixed Brunt Vaisala frequency - CLUBB ticket #1069
- Included usage for bv_efold in src/CLUBB_core/advance_helper_module.F90
- Added intent(out) for correction_stability in subroutine calc_correction_stability
- Removed brunt_vaisala_freq_sqd_plus
- Idiot proofed interaction between l_diag_Lscale_from_tau and l_use_invrs_tau_N2_iso
- Moved stat_update_var(invrs_tau_wp3_zm) out of if ( l_diag_Lscale_from_tau )
- Fixed some typos in src/CLUBB_core/stats_zt_module.F90
- Added comment about to input_misc/tuner/README about t_variables adn input/stats/tuning_stats.in
</comment><date>2023-08-01 15:21:22 -0500</date><id>c0fdc2b307c5f63608c72f08ab493fce4516a741</id><msg>Bv efold bit changing (#1095)</msg><path><editType>edit</editType><file>advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>advance_helper_module.F90</file></path><path><editType>edit</editType><file>stats_zt_module.F90</file></path><path><editType>edit</editType><file>mixing_length.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>advance_clubb_core_module.F90</affectedPath><affectedPath>advance_helper_module.F90</affectedPath><commitId>4ebc70252b6ce52cfdb7883770217c34fd2e2107</commitId><timestamp>1693937947000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Fixed some oversights for the bv_efold commits and increased string length for tuning field names for invrs_tau variables - CLUBB ticket #1069 (#1106)

This commit is NOT bit changing
- Removed remaining mentions of brunt_vaisala_freq_sqd_plus
- Added assignment for invrs_tau_wp3_zm in Lscale mode in advance_clubb_core
- Increased length of string variables hoc_v, les_v, and t_variables in src/error.F90 to accomodate tuning for invrs_tau fields
</comment><date>2023-09-05 13:19:07 -0500</date><id>4ebc70252b6ce52cfdb7883770217c34fd2e2107</id><msg>Fixed some oversights for the bv_efold commits and increased string length for tuning field names for invrs_tau variables - CLUBB ticket #1069 (#1106)</msg><path><editType>edit</editType><file>advance_helper_module.F90</file></path><path><editType>edit</editType><file>advance_clubb_core_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>mixing_length.F90</affectedPath><commitId>395023c230e9f1ddaa7411d592718b573ab65d15</commitId><timestamp>1693950812000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>BIT_CHANGING! brunt_vaisala_freq_sqd_mixed now replaces brunt_vaisala_freq_sqd for later calculations - CLUBB ticket #1102

Changes in src/CLUBB_core/mixing_length.F90:
- brunt_vaisala_freq_sqd_mixed is now used to calculate brunt_vaisala_freq_sqd_smth and brunt_vaisala_freq_sqd_clipped instead of brunt_vaisala_freq_sqd
- Removed 0.1 factor for bkgnd term in calculation of invrs_tau_xp2_zm
- Commented out clipping of invrs_tau_xp2_zm to 0.003 and lower out of cloud
</comment><date>2023-09-05 16:53:32 -0500</date><id>395023c230e9f1ddaa7411d592718b573ab65d15</id><msg>BIT_CHANGING! brunt_vaisala_freq_sqd_mixed now replaces brunt_vaisala_freq_sqd for later calculations - CLUBB ticket #1102</msg><path><editType>edit</editType><file>mixing_length.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>model_flags.F90</affectedPath><commitId>7afb2bd7070e5e83204950c8b94a12b73b8f88fd</commitId><timestamp>1694635856000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>BIT_CHANGING for lscale setup. Updated configurable_model_flags.in and model_flags.F90 - CLUBB ticket #1102 (#1108)

- Added new flags to inut/tunable_parameters_Lscale/configurable_model_flags.in
- Changed default setting for l_use_tke_in_wp3_pr_turb_term in model_flags.F90 from false to true
</comment><date>2023-09-13 15:10:56 -0500</date><id>7afb2bd7070e5e83204950c8b94a12b73b8f88fd</id><msg>BIT_CHANGING for lscale setup. Updated configurable_model_flags.in and model_flags.F90 - CLUBB ticket #1102 (#1108)</msg><path><editType>edit</editType><file>model_flags.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>stats_variables.F90</affectedPath><affectedPath>advance_clubb_core_module.F90</affectedPath><affectedPath>stats_zm_module.F90</affectedPath><commitId>5256cf04633fd71551f6bd29ee0632494b611a93</commitId><timestamp>1695154187000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Likely BIT_CHANGING because of added output fields. Added code outputting C6_term and different Brunt Vaisala frequencies to disk - CLUBB ticket #1102 (#1109)

- Added C6_term and bv_freq fields to all_stats.F90 and standard_stats.F90
- Added new fields to VariableGroupTaus.py in pyplotgen
- Added calls to stat_update_var to advance_clubb_core_module.F90
- Modified stats_variables.F90 and stats_zm_module.F90 accordingly
</comment><date>2023-09-19 15:09:47 -0500</date><id>5256cf04633fd71551f6bd29ee0632494b611a93</id><msg>Likely BIT_CHANGING because of added output fields. Added code outputting C6_term and different Brunt Vaisala frequencies to disk - CLUBB ticket #1102 (#1109)</msg><path><editType>edit</editType><file>stats_variables.F90</file></path><path><editType>edit</editType><file>advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>stats_zm_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>mixing_length.F90</affectedPath><affectedPath>stats_zm_module.F90</affectedPath><affectedPath>advance_clubb_core_module.F90</affectedPath><affectedPath>stats_variables.F90</affectedPath><commitId>0735b8dca68da8eec17c24fca269223d8756e97a</commitId><timestamp>1695421268000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Changed sqrt_Ri_zm to Ri_zm in preparation of changing the exponent for calculation of invrs_tau_wpxp_zm in mixing_length.F90 - CLUBB ticket #1102 (#1110)

BIT_CHANGING! Changed sqrt_Ri_zm to Ri_zm in preparation of changing the exponent for calculation of invrs_tau_wpxp_zm in mixing_length.F90 - CLUBB ticket #1102
Changes in input/stats/all_stats.in, src/CLUBB_core/advance_clubb_core_module.F90, src/CLUBB_core/mixing_length.F90, src/CLUBB_core/stats_variables.F90, and src/CLUBB_core/stats_zm_module.F90
Ri_zm was added to input/stats/standard_stats.in
</comment><date>2023-09-22 17:21:08 -0500</date><id>0735b8dca68da8eec17c24fca269223d8756e97a</id><msg>Changed sqrt_Ri_zm to Ri_zm in preparation of changing the exponent for calculation of invrs_tau_wpxp_zm in mixing_length.F90 - CLUBB ticket #1102 (#1110)</msg><path><editType>edit</editType><file>stats_zm_module.F90</file></path><path><editType>edit</editType><file>mixing_length.F90</file></path><path><editType>edit</editType><file>advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>stats_variables.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>stats_variables.F90</affectedPath><affectedPath>stats_zm_module.F90</affectedPath><affectedPath>advance_helper_module.F90</affectedPath><commitId>62e535382820e1ebdd77dbb79de655e217e552d9</commitId><timestamp>1695428333000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>BIT_CHANGING! Removed Richardson_num and all corresponding code - CLUBB ticket #1102 (#1111)

This commit is BIT_CHANGING because:
1. the output field Richardson_num was removed.
2. Since the flag l_use_shear_turb_freq_sqd was removed, the variable shear_sqd is now always written to disk. That means previously, the outputted field shear_sqd was 0 everywhere whereas now it is not anymore. The calculation of shear_sqd within CLUBB did not change!
- Removed mentions in input/stats/all_stats.in and standards_stats.in
- Removed mentions in src/CLUBB_core/stats_variables.F90 and stats_zm_module.F90
- In src/CLUBB_core/advance_helper_module.F90 removed mentions to [i]Richardson_num[_clipped], as well as l_use_shear_turb_freq_sqd, l_Richardson_vert_avg, and turb_freq_sqd sinc those are only used for calculation of Richardson_num.
</comment><date>2023-09-22 19:18:53 -0500</date><id>62e535382820e1ebdd77dbb79de655e217e552d9</id><msg>BIT_CHANGING! Removed Richardson_num and all corresponding code - CLUBB ticket #1102 (#1111)</msg><path><editType>edit</editType><file>stats_variables.F90</file></path><path><editType>edit</editType><file>advance_helper_module.F90</file></path><path><editType>edit</editType><file>stats_zm_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>mixing_length.F90</affectedPath><affectedPath>parameters_tunable.F90</affectedPath><affectedPath>parameter_indices.F90</affectedPath><affectedPath>clubb_api_module.F90</affectedPath><commitId>4263da9f7ae792444654c9d5acefb27ba5db0e06</commitId><timestamp>1697137474000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Tunable Richardson number exponent - CLUBB ticket #1102 (#1114)

BIT_CHANGING! Added the exponent to the Richardson number in the calculation of the invrs_tau_wpxp threshold term in src/CLUBB_core/mixing_length.F90  to the list of tunable parameters.
This is bit changing due to the difference in Fortran between taking the sqrt and the .5th power.
</comment><date>2023-10-12 14:04:34 -0500</date><id>4263da9f7ae792444654c9d5acefb27ba5db0e06</id><msg>Tunable Richardson number exponent - CLUBB ticket #1102 (#1114)</msg><path><editType>edit</editType><file>clubb_api_module.F90</file></path><path><editType>edit</editType><file>parameter_indices.F90</file></path><path><editType>edit</editType><file>parameters_tunable.F90</file></path><path><editType>edit</editType><file>mixing_length.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>tunable_parameters.in</affectedPath><commitId>e59f7732ad64c2330f9a51fe673a2c471c1d85f3</commitId><timestamp>1697137474000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Tunable Richardson number exponent - CLUBB ticket #1102 (#1114)

BIT_CHANGING! Added the exponent to the Richardson number in the calculation of the invrs_tau_wpxp threshold term in src/CLUBB_core/mixing_length.F90  to the list of tunable parameters.
This is bit changing due to the difference in Fortran between taking the sqrt and the .5th power.
</comment><date>2023-10-12 14:04:34 -0500</date><id>e59f7732ad64c2330f9a51fe673a2c471c1d85f3</id><msg>Tunable Richardson number exponent - CLUBB ticket #1102 (#1114)</msg><path><editType>edit</editType><file>tunable_parameters.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>SRC/CLUBB/advance_clubb_core_module.F90</affectedPath><affectedPath>SRC/CLUBB/clubb_api_module.F90</affectedPath><affectedPath>SRC/CLUBB/mixing_length.F90</affectedPath><affectedPath>SRC/CLUBB/model_flags.F90</affectedPath><affectedPath>SRC/CLUBB/advance_helper_module.F90</affectedPath><affectedPath>SRC/CLUBB/parameter_indices.F90</affectedPath><affectedPath>SRC/CLUBB/parameters_tunable.F90</affectedPath><affectedPath>SRC/CLUBB/stats_variables.F90</affectedPath><affectedPath>SRC/CLUBB/stats_zm_module.F90</affectedPath><commitId>da7fedcbd01590aea425d6cffe7f60be0e1f1ca6</commitId><timestamp>1697206669000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/root</absoluteUrl><fullName>root</fullName></author><authorEmail>root@carson.localdomain</authorEmail><comment>Raw-copy updating SRC/CLUBB
</comment><date>2023-10-13 09:17:49 -0500</date><id>da7fedcbd01590aea425d6cffe7f60be0e1f1ca6</id><msg>Raw-copy updating SRC/CLUBB</msg><path><editType>edit</editType><file>SRC/CLUBB/mixing_length.F90</file></path><path><editType>edit</editType><file>SRC/CLUBB/stats_zm_module.F90</file></path><path><editType>edit</editType><file>SRC/CLUBB/clubb_api_module.F90</file></path><path><editType>edit</editType><file>SRC/CLUBB/parameter_indices.F90</file></path><path><editType>edit</editType><file>SRC/CLUBB/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>SRC/CLUBB/model_flags.F90</file></path><path><editType>edit</editType><file>SRC/CLUBB/parameters_tunable.F90</file></path><path><editType>edit</editType><file>SRC/CLUBB/advance_helper_module.F90</file></path><path><editType>edit</editType><file>SRC/CLUBB/stats_variables.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>CLUBB_PARAMETERS/tunable_parameters.in</affectedPath><commitId>a94a7af5f49efba3664f7c4ef423b0ebcf573ddd</commitId><timestamp>1697206705000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/root</absoluteUrl><fullName>root</fullName></author><authorEmail>root@carson.localdomain</authorEmail><comment>Raw-copy updating CLUBB_PARAMETERS
</comment><date>2023-10-13 09:18:25 -0500</date><id>a94a7af5f49efba3664f7c4ef423b0ebcf573ddd</id><msg>Raw-copy updating CLUBB_PARAMETERS</msg><path><editType>edit</editType><file>CLUBB_PARAMETERS/tunable_parameters.in</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>advance_clubb_core_module.F90</affectedPath><commitId>1a7e15ee602ebadad150327e1e40ac59800ea1dc</commitId><timestamp>1697555413000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Deletes svn id tag, will trigger host-model nightly tests.
</comment><date>2023-10-17 10:10:13 -0500</date><id>1a7e15ee602ebadad150327e1e40ac59800ea1dc</id><msg>Deletes svn id tag, will trigger host-model nightly tests.</msg><path><editType>edit</editType><file>advance_clubb_core_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>SRC/CLUBB/advance_clubb_core_module.F90</affectedPath><commitId>949f506868633f80741815c702d389d1eaf2c643</commitId><timestamp>1697555534000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/larsongroupsysadmin</absoluteUrl><fullName>LarsonGroupSysAdmin</fullName></author><authorEmail>larsongroupgithub@gmail.com</authorEmail><comment>Raw-copy updating SRC/CLUBB
</comment><date>2023-10-17 10:12:14 -0500</date><id>949f506868633f80741815c702d389d1eaf2c643</id><msg>Raw-copy updating SRC/CLUBB</msg><path><editType>edit</editType><file>SRC/CLUBB/advance_clubb_core_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>SRC/SGS_CLUBB/clubb_sgs.F90</affectedPath><commitId>833289feb7ac2157c4ccf7e74b32313947cc17c5</commitId><timestamp>1697570284000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen</absoluteUrl><fullName>42725900+domkesteffen</fullName></author><authorEmail>42725900+domkesteffen@users.noreply.github.com</authorEmail><comment>Update clubb_sgs.F90

Added CLUBB parameter wpxp_Ri_exp
</comment><date>2023-10-17 14:18:04 -0500</date><id>833289feb7ac2157c4ccf7e74b32313947cc17c5</id><msg>Update clubb_sgs.F90</msg><path><editType>edit</editType><file>SRC/SGS_CLUBB/clubb_sgs.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>SRC/TIMING/t_stop.c</affectedPath><affectedPath>SRC/cstuff.c</affectedPath><commitId>d95570b09d8b83aa95560e42e4fd66b7e2899c32</commitId><timestamp>1697663766000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Add library calls to allow SAM to compile with new icx intel compiler (#154)

</comment><date>2023-10-18 16:16:06 -0500</date><id>d95570b09d8b83aa95560e42e4fd66b7e2899c32</id><msg>Add library calls to allow SAM to compile with new icx intel compiler (#154)</msg><path><editType>edit</editType><file>SRC/cstuff.c</file></path><path><editType>edit</editType><file>SRC/TIMING/t_stop.c</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>advance_helper_module.F90</affectedPath><commitId>8be88d0f94ca7883638a1e87415cb48dc0d03ca0</commitId><timestamp>1697723854000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Remove svn id tag in order to trigger nightly tests.
</comment><date>2023-10-19 08:57:34 -0500</date><id>8be88d0f94ca7883638a1e87415cb48dc0d03ca0</id><msg>Remove svn id tag in order to trigger nightly tests.</msg><path><editType>edit</editType><file>advance_helper_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>advance_windm_edsclrm_module.F90</affectedPath><commitId>ffdd91c97979046cdbe2f9502cb3047a482c6da7</commitId><timestamp>1697732821000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Removed 3rd svn id tag in order to trigger nightly tests
</comment><date>2023-10-19 11:27:01 -0500</date><id>ffdd91c97979046cdbe2f9502cb3047a482c6da7</id><msg>Removed 3rd svn id tag in order to trigger nightly tests</msg><path><editType>edit</editType><file>advance_windm_edsclrm_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>stats_clubb_utilities.F90</affectedPath><affectedPath>stats_variables.F90</affectedPath><affectedPath>clubb_api_module.F90</affectedPath><commitId>9ca3f47f2c7361719136ed64975e29e55f893626</commitId><timestamp>1698188257000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Finally removing scratch variables. (#1116)

* Finally removing scratch variables.

* Zeroing out below ground levels to prevent NaN in stats.
</comment><date>2023-10-24 17:57:37 -0500</date><id>9ca3f47f2c7361719136ed64975e29e55f893626</id><msg>Finally removing scratch variables. (#1116)</msg><path><editType>edit</editType><file>stats_clubb_utilities.F90</file></path><path><editType>edit</editType><file>clubb_api_module.F90</file></path><path><editType>edit</editType><file>stats_variables.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>mixing_length.F90</affectedPath><commitId>22872a5139682034753065f97d05099ddf2e3a47</commitId><timestamp>1698787332000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Latest batch of non-bit changing code changes - CLUBB ticket #1115 (#1119)

- Added new folder input/tunable_parameters_tauMatchLscale/ for latest taus code setup reproducing the master Lscale output.
- Changes in src/CLUBB_core_mixing_length.F90:
   - Renamed ddzt_umvm -&gt; ddzt_umvm_sqd
             ddzt_umvm_clipped -&gt; ddzt_umvm_sqd_clipped
             sqrt_ddzt_umvm -&gt; norm_ddzt_umvm
             smooth_sqrt_ddzt_umvm -&gt; smooth_norm_ddzt_umvm
             Ri_zm_clipped -&gt; Ri_zm_smooth in some places
   - Made some variable replacements for consistency's sake
- Fixed path of log files in run_scripts/run_bindiff_all.py
</comment><date>2023-10-31 16:22:12 -0500</date><id>22872a5139682034753065f97d05099ddf2e3a47</id><msg>Latest batch of non-bit changing code changes - CLUBB ticket #1115 (#1119)</msg><path><editType>edit</editType><file>mixing_length.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>advance_clubb_core_module.F90</affectedPath><affectedPath>mixing_length.F90</affectedPath><commitId>337f2b0a17376a45c2c1ac2250b6cff75f15d6ad</commitId><timestamp>1698795774000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>BIT_CHANGING! Fixed some issues with wpxp_Ri_exp, changed z_displace value - CLUBB ticket #1115 (#1120)

- Removed commented lines from tunable_parameters.in file in input/tunable_parameters_tauMatchLscale
- Increased z_displace value from 10 to 25. This value was chosen so that the taus code with the parameter and flag settings in input/tunable_parameters_tauMatchLscale match the master Lscale output below clouds
- Fixed some issues with the new parameter wpxp_Ri_exp:
   - Moved new exponentiation to a place so that it emulates the previous version with sqrt(Ri_zm)
   - Adjusted code for l_smooth_min_max=true to match the default version
</comment><date>2023-10-31 18:42:54 -0500</date><id>337f2b0a17376a45c2c1ac2250b6cff75f15d6ad</id><msg>BIT_CHANGING! Fixed some issues with wpxp_Ri_exp, changed z_displace value - CLUBB ticket #1115 (#1120)</msg><path><editType>edit</editType><file>advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>mixing_length.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/larsongroupsysadmin</absoluteUrl><fullName>LarsonGroupSysAdmin</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/benjamin.andrew.stephens</absoluteUrl><fullName>benjamin.andrew.stephens</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/root</absoluteUrl><fullName>root</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/42725900+domkesteffen</absoluteUrl><fullName>42725900+domkesteffen</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>14</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/sam_clubb_copy_test/14/</url></nextBuild><previousBuild><number>12</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/sam_clubb_copy_test/12/</url></previousBuild></workflowRun>