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JAX (#1351) * Testing new porting shortcut by creating a jax version of advance_xm_wpxp.py - it wen't well. Also updating the porting shortcut with more tips. * Small update to porting shortcut * Iterative improvements to porting shortcut * Using porting script to port advance_xp2_xpyp in one go - still some issues that seems to require rerunning to fix issues, which is sad but maybe the best we can do with such a simple method * Little bug fixes * Updates to make the ports create better jax in the sense that it is more jit-ready * Adding a more general plan to also use CLUBB-JAX and using it on advance_xm_wpxp * Cleanup * More properly jax-izing the current jax ports * More formatting of ported jax code * More formatting of ported jax code * Updates in pursuit of full jit-compatibility * Adding jit compile test * Fully jitting advance_xp2_xpyp * Copying parameter_indices from CLUBB-JAX but subtracting 1 to avoid -1 in code * Little update to port shortcut * Jitting and formatting CLUBB-JAX * Mostly formatting * Updating jax code * Improving stats outputting * Compile mono flux range loops with JAX * Improvement to jax mixing length port * Organizing stats code * Making jax work on GPU * Improvements to prescribe forcings code * Mainly prescribe forcings formatting work * Small improvements, getting rid of unneccesary weird jit statement * Radiation porting completed. Bugsrad and silhs radiation were intentionally left out for now. * Removing stale code and adding a proposal.md file detailing a potential future feature to make the python_api work with current jax code * Proper port of model flags and parameters and constants and such - those there were all kinda put into one file before * new jenkinsfile added * Tiny cleanup and adding back some stats outputs for microphysics that we need for some reason * limited to only one process. Find out built time * made jenkins jax tests faster by running them not so extensively * Mainly working on README, also some other tiny things: changing default test stats list to standard instead of all_stats, and renaming run_jax.sh to run_jax_wrapper.sh --------- Co-authored-by: Daniel Ebel <debel@uwm.edu> 2026-09-02 13:15:01 -050053920ce2095c4b721f59936d5933dd6da8bcb590Clubb JAX 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Hueblerhuebler@uwm.eduPushing loop into advance_microphys 2026-09-02 14:01:36 -050038218c69aee8dfef1cf07b290c7d755629659acbPushing loop into advance_microphyseditsrc/clubb_driver.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/CLUBB_core/fill_holes.F90editsrc/Microphys/advance_microphys_module.F90src/Microphys/pdf_hydromet_microphys_wrapper.F90src/Microphys/mixed_moment_PDF_integrals.F9005c19cc978cd858289e36946366c64b6e9bcbc741788460667000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduLittle more loop push 2026-09-03 13:37:47 -050005c19cc978cd858289e36946366c64b6e9bcbc74Little more loop pusheditsrc/Microphys/mixed_moment_PDF_integrals.F90editsrc/Microphys/pdf_hydromet_microphys_wrapper.F90src/Microphys/estimate_scm_microphys_module.F90src/Microphys/KK_microphys_module.F90src/SILHS/latin_hypercube_driver_module.F90src/Microphys/pdf_hydromet_microphys_wrapper.F90src/Microphys/advance_microphys_module.F90src/Microphys/lh_microphys_driver_module.F90src/SILHS/lh_microphys_var_covar_module.F90src/SILHS/est_kessler_microphys_module.F90src/Microphys/silhs_category_variance_module.F90src/CLUBB_core/stats_clubb_utilities.F90src/CLUBB_core/fill_holes.F90src/Microphys/microphys_driver.F90src/SILHS/math_utilities.F9014bd4616fdc2c657ef2b0b8d2e461557e5450dc91788469127000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMore basic loop pushing 2026-09-03 15:58:47 -050014bd4616fdc2c657ef2b0b8d2e461557e5450dc9More basic loop pushingeditsrc/Microphys/silhs_category_variance_module.F90editsrc/Microphys/KK_microphys_module.F90editsrc/SILHS/latin_hypercube_driver_module.F90editsrc/CLUBB_core/fill_holes.F90editsrc/SILHS/lh_microphys_var_covar_module.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editsrc/Microphys/pdf_hydromet_microphys_wrapper.F90editsrc/Microphys/microphys_driver.F90editsrc/SILHS/est_kessler_microphys_module.F90editsrc/SILHS/math_utilities.F90editsrc/Microphys/estimate_scm_microphys_module.F90editsrc/Microphys/advance_microphys_module.F90editsrc/Microphys/lh_microphys_driver_module.F90src/Microphys/lh_microphys_driver_module.F90src/Microphys/microphys_driver.F90src/SILHS/est_kessler_microphys_module.F90src/CLUBB_core/advance_xp2_xpyp_module.F90dbae7c57ce2e846851e8406647e2eaef5f8398291788473156000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduMore loop pushing, also found what seems to be a bug with additional columns, theres code that uses only the first one. Im leaving this in for now to maintain BFBness, but labeled the problem areas with TODOs 2026-09-03 17:05:56 -0500dbae7c57ce2e846851e8406647e2eaef5f839829More loop pushing, also found what seems to be a bug with additional columns, theres code that uses only the first one. Im leaving this in for now to maintain BFBness, but labeled the problem areas with TODOseditsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/Microphys/microphys_driver.F90editsrc/SILHS/est_kessler_microphys_module.F90editsrc/Microphys/lh_microphys_driver_module.F90src/SILHS/lh_microphys_var_covar_module.F90src/Microphys/estimate_scm_microphys_module.F90src/Microphys/silhs_category_variance_module.F90src/Microphys/KK_microphys_module.F90src/SILHS/latin_hypercube_driver_module.F90src/Microphys/microphys_driver.F90src/SILHS/math_utilities.F90src/Microphys/morrison_microphys_module.F90src/Microphys/gfdl_activation.F90src/Microphys/advance_microphys_module.F90550f018e55a5cdb6d556fe39b36f740e9ddc6a3f1788554299000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPotentially final batch of loop pushes 2026-09-04 15:38:19 -0500550f018e55a5cdb6d556fe39b36f740e9ddc6a3fPotentially final batch of loop pusheseditsrc/Microphys/silhs_category_variance_module.F90editsrc/Microphys/estimate_scm_microphys_module.F90editsrc/Microphys/morrison_microphys_module.F90editsrc/SILHS/latin_hypercube_driver_module.F90editsrc/Microphys/advance_microphys_module.F90editsrc/Microphys/microphys_driver.F90editsrc/Microphys/KK_microphys_module.F90editsrc/Microphys/gfdl_activation.F90editsrc/SILHS/math_utilities.F90editsrc/SILHS/lh_microphys_var_covar_module.F90githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse40http://carson.math.uwm.edu/jenkins/view/all/job/run_bindiff_w_varying_flags_against_master/40/38http://carson.math.uwm.edu/jenkins/view/all/job/run_bindiff_w_varying_flags_against_master/38/