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(cherry picked from commit 47106db56945d6d0c1f962cc77d205db99d60f4f)
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(cherry picked from commit f5c3b99d56499acc2a706cf024dd802f73030dd2)
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e/new_hybrid_pdf_main.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_numerical_check.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/ly93_pdf.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/new_tsdadg_pdf.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/stats_netcdf.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_argument_contract_audit.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_mixing_length.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/radiation.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/remapping_module.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/calc_pressure.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/sfc_varnce_module.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/pdf_parameter_module.py</file></path></item><item 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Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>advance_clubb_core.py cleanup and removing strange compat_kwargs usages that seem like artifacts of laziness

(cherry picked from commit 9056400901e270333b80ee8f66af055d395b8020)
</comment><date>2026-06-25 23:05:35 -0500</date><id>e73f5d17f344ccfbf4741d978a7e0dd60a06fb25</id><msg>advance_clubb_core.py cleanup and removing strange compat_kwargs usages that seem like artifacts of laziness</msg><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/diffusion.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/pdf_closure.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_ly93.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_stats.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_new_pdf.py</file></path><path><editType>edit</editType><file>clubb_python_driver/advance_clubb_to_end.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/new_pdf.py</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/new_hybrid_pdf_main_wrapper.F90</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_mono_flux.py</file></path><path><editType>edit</editType><file>clubb_python_driver/advance_clubb_core.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/sponge_layer_damping.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_new_tsdadg.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/prescribe_forcings.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/remapping_module.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_new_hybrid_pdf.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_mixing_length.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_xp2_xpyp.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/new_tsdadg_pdf.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/clubb_api.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_core.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_init_pressure.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_remap.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf.py</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90</file></path><path><editType>edit</editType><file>clubb_jax/clubb_case_initalization.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_advance_core_subs.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_stats_accumulate.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/err_info_type_module.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/advance_helper.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/radiation.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/skx_module.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_udt_return_contract.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/ly93_pdf.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_skx.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_wp2_wp3.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_transport.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_sponge.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_windm_edsclrm.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_precipitation_fraction.py</file></path><path><editType>edit</editType><file>clubb_python_driver/clubb_case_initalization.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/adg1_adg2_3d_luhar_pdf.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/stats_netcdf.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_xm_wpxp.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/argument_list_en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Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Improving audit script even more, fixing issues it found. Also making advance_clubb_core.py nice and making an LLM shortcut for how to repeat the process

(cherry picked from commit 25b41435d7bfbbe03f2736440bdcbf4330f863ab)
</comment><date>2026-06-25 23:49:56 -0500</date><id>1fa8fdebc019e2807e0031f7233ef85243f80ad6</id><msg>Improving audit script even more, fixing issues it found. Also making advance_clubb_core.py nice and making an LLM shortcut for how to repeat the process</msg><path><editType>edit</editType><file>clubb_jax/advance_clubb_to_end.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/mixing_length.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_new_pdf.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_mixing_length.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_f2py.pyf</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_wp2_wp3.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.py</file></path><path><editType>edit</editType><file>clubb_jax/advance_clubb_core.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_windm_edsclrm.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/pdf_closure.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/error_code.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_xp2_xpyp.py</file></path><path><editType>edit</editType><file>LLM_prompts/SHORTCUTS.md</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/remapping_module.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_luhar.py</file></path><path><editType>edit</editType><file>clubb_python_driver/advance_clubb_to_end.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/sponge_layer_damping.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_matrix_solver_wrapper.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/pdf_parameter_module.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_xm_wpxp.py</file></path><path><editType>add</editType><file>LLM_prompts/port_underlying_fortran_to_other_languages.md</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/diffusion.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/clubb_api.py</file></path><path><editType>edit</editType><file>clubb_python_driver/clubb_case_initalization.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_stats_accumulate.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/stats_netcdf.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/loss_driver.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_stats.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/new_pdf_main.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/mono_flux_limiter.py</file></path><path><editType>edit</editType><file>clubb_python_api/f2py_fortran_wrappers/clubb_loss_driver_wrapper.F90</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_argument_contract_audit.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_advance_xp3.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_mono_flux.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_pdf_closure_driver.py</file></path><path><editType>edit</editType><file>clubb_python_driver/advance_clubb_core.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_call_tree_precipitation_fraction.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/parameters_tunable.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/adg1_adg2_3d_luhar_pdf.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/test_advance_core_subs.py</file></path><path><editType>edit</editType><file>clubb_python_api/tests/argument_list_enforcer/argument_contract_audit.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/prescribe_forcings.py</file></path><path><editType>edit</editType><file>clubb_jax/clubb_case_initalization.py</file></path><path><editType>edit</editType><file>clubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf_main.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/README</affectedPath><affectedPath>run_scripts/run_bindiff_all.py</affectedPath><affectedPath>tests/README</affectedPath><affectedPath>tests/run_bindiff_w_flags.py</affectedPath><commitId>7c083496c42caa1b7d18c781134f0cc18ae94748</commitId><timestamp>1782494071000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Building varying flags bindiff into run_bindiff_all.py, this just makes sense and helps fix the varying flags BFB test
</comment><date>2026-06-26 12:14:31 -0500</date><id>7c083496c42caa1b7d18c781134f0cc18ae94748</id><msg>Building varying flags bindiff into run_bindiff_all.py, this just makes sense and helps fix the varying flags BFB test</msg><path><editType>edit</editType><file>run_scripts/run_bindiff_all.py</file></path><path><editType>edit</editType><file>run_scripts/README</file></path><path><editType>edit</editType><file>tests/README</file></path><path><editType>edit</editType><file>tests/run_bindiff_w_flags.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><previousBuild><number>547</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_timestep_gfortran_tests/547/</url></previousBuild></workflowRun>