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up run_scripts (#1320) * Cleaning up run_scripts by removing old bash files, also moving many scripts into a new tests/ directory, since those are tests. Fixing a small bug in clubb_driver as well, just needed to move a print statement, otherwise it tries writing to a closed file. * A little cleanup and better READMEs for run_scripts and tests 2026-06-25 21:06:57 -0500e04956358685c2869358db8b6d46d16cf9744b03Cleaning up run_scripts (#1320)deleterun_scripts/run_scm_all.bashdeleterun_scripts/run_thread_test.pydeleterun_scripts/ensemble_run/input/.gitignoreeditjenkins_tests/clubb_monoflux_CPU_vs_GPU_diff/Jenkinsfiledeleterun_scripts/run_timestep_tests.bashdeleterun_scripts/check_mirrored_multi_col_output.pyaddrun_scripts/run_clubb_and_pyplotgen.pyeditrun_scripts/run_scm_loss.pyeditrun_scripts/READMEaddtests/READMEeditjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfiledeleterun_scripts/run_scm_collect.basheditpostprocessing/pyplotgen/pyplotgen.pyeditsrc/error.F90deleterun_scripts/run_timestep_tests.pyeditsrc/clubb_driver.F90addtests/test_fatal_error_handling.pydeleterun_scripts/test_fatal_error_handling.bashaddtests/run_silhs_test.pydeleterun_scripts/run_scm_debug.basheditjenkins_tests/clubb_python_test/Jenkinsfileeditrun_scripts/run_clubb_w_varying_flags.pydeleterun_scripts/check_budget_balance.pyeditpostprocessing/latin_hypercube_plotting/variance_analysis_scripts/rms_vs_sample_points/silhs_varying_sp_output.shdeleterun_scripts/ensemble_run/ensembles/.gitignoredeleterun_scripts/run_bindiff_w_flags_requirements.txtdeleterun_scripts/run_python_vs_fortran_cases.pydeleterun_scripts/fire_tuner.pydeleterun_scripts/run_G_unit_tests.bashdeletejenkins_tests/clubb_uninit_var_oracle_test/Jenkinsfileaddtests/test_fire_tuner.pydeleterun_scripts/run_bindiff_w_flags_config_core_flags.jsondeleterun_scripts/generate_seed.bashaddutilities/create_case_namelist.pyeditjenkins_tests/clubb_G_unit_gfortran_tests/Jenkinsfileeditjenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfileaddtests/check_mirrored_multi_col_output.pyaddtests/run_loss_output_consistency.pyeditREADMEeditjenkins_tests/clubb_openmp_gfortran_test/Jenkinsfiledeleterun_scripts/ensemble_run/create_output.basheditrun_scripts/run_scm.pyaddtests/run_python_vs_fortran_cases.pyaddtests/run_bindiff_w_flags.pydeleterun_scripts/run_clubb_and_pyplotgen.bashdeleterun_scripts/run_stats_output_consistency.pyeditjenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfiledeleterun_scripts/run_scm_collect_suite.bashaddtests/run_thread_test.pyaddtests/run_jax_vs_fortran_cases.pydeleterun_scripts/run_bindiff_w_flags_config_host_flags.jsondeleterun_scripts/time_scm_all.bashaddtests/run_timestep_tests.pyaddtests/check_budget_balance.pyeditrun_scripts/run_bindiff_all.pydeleterun_scripts/run_jax_vs_fortran_cases.pydeleterun_scripts/test_monoflux_limiter_GPU.pyeditjenkins_tests/clubb_stats_output_consistency_gfortran_test/Jenkinsfiledeleterun_scripts/test_fatal_error_handling.pydeleterun_scripts/ensemble_run/READMEeditjenkins_tests/clubb_restart_silhs_gfortran_test/Jenkinsfiledeleterun_scripts/check_multi_col_error.pyaddinput/flag_sets/run_bindiff_w_flags_config_core_flags.jsonaddtests/run_clubb_conv_test.pyeditclubb_python_driver/README.mddeleterun_scripts/fill_holes.pyeditjenkins_tests/clubb_silhs_convergence_gfortran/Jenkinsfiledeleterun_scripts/ensemble_run/ensemble_run.bashedittuner/tuning_worker.pyaddinput/flag_sets/run_bindiff_w_flags_config_host_flags.jsoneditsrc/CMakeLists.txtaddtests/run_benchmark_converter_test.pyeditjenkins_tests/clubb_check_budget_balance_gfortran/Jenkinsfileeditjenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfileaddtests/run_stats_output_consistency.pydeletejenkins_tests/clubb_cmake_output_matching/Jenkinsfiledeleterun_scripts/ensemble_run/submission/.gitignoredeleterun_scripts/run_silhs_test.bashaddtests/run_restart_test.pyeditjenkins_tests/clubb_timestep_convergence_gfortran_test/Jenkinsfiledeleterun_scripts/ensemble_run/output/.gitignoredeleterun_scripts/run_tuner.bashdeleterun_scripts/run_thread_test.bashaddutilities/create_multi_col_params.pyaddinput/flag_sets/run_bindiff_w_flags_config_example.jsoneditclubb_jax/README.mddeleterun_scripts/run_bindiff_varying_flags_output.pydeleterun_scripts/run_loss_output_consistency.pydeleterun_scripts/run_bindiff_w_flags_config_example.jsondeleterun_scripts/run_bindiff_w_flags.pyeditpostprocessing/timestep_convergence_test.bashdeleterun_scripts/run_silhs_test.pyeditjenkins_tests/clubb_restart_gfortran_test/Jenkinsfiledeleterun_scripts/diff_netcdf_outputs.pyadddash_app/fill_holes.pyedittuner/test_tuning_strategy.pyedittuner/README.mddeleterun_scripts/create_case_namelist.pyeditclubb_jax/JAX_CONVERSION_PLAN.mdeditjenkins_tests/clubb_timestep_gfortran_tests/Jenkinsfileeditjenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfileeditjenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfiledeleterun_scripts/RUN_CASESdeleterun_scripts/run_bindiff_all.bashaddtests/run_G_unit_tests.pyeditjenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfiledeleterun_scripts/create_multi_col_params.pyeditsrc/generalized_grid_test.F90editjenkins_tests/clubb_fire_tuning_gfortran_test/Jenkinsfiledeleterun_scripts/run_restart_test.pydeleterun_scripts/run_clubb_conv_test.pydeleterun_scripts/run_scm.basheditLLM_prompts/update_python_api_and_drivers.mddeletesrc/int2txt.F90deleterun_scripts/run_clubb_conv_test.bashdeleterun_scripts/run_benchmark_converter_test.pyedittuner/paths.pydeleterun_scripts/run_G_unit_tests.pyeditrun_scripts/run_tuner.pydeleterun_scripts/ensemble_run/ensemble_setup.bashaddtests/test_monoflux_limiter_GPU.pysrc/CMakeLists.txtrun_scripts/READMEsrc/jacobian.F90READMEinput_misc/jacobian.inrun_scripts/run_jacobian.bash5512bff0caa1b179b2a03a5512fc3de2c866b0cb1782441296000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving jacobian code - it has not worked in a long time 2026-06-25 21:34:56 -05005512bff0caa1b179b2a03a5512fc3de2c866b0cbRemoving jacobian code - it has not worked in a long timeeditsrc/CMakeLists.txteditREADMEdeletesrc/jacobian.F90deleteinput_misc/jacobian.indeleterun_scripts/run_jacobian.basheditrun_scripts/READMEsrc/Input_fields/recl.ince1ca53920f7095d09c5dde5b9502f4056c481b481782441838000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving recl.inc, just dead code for an outdated issue 2026-06-25 21:43:58 -0500e1ca53920f7095d09c5dde5b9502f4056c481b48Removing recl.inc, just dead code for an outdated issuedeletesrc/Input_fields/recl.incsrc/CLUBB_core/lapack_wrap.F900ed15803474cd7d3d8228a642e9e2599a840707d1782442179000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving ifdefs that are only for E3SM and only on a specific machine 2026-06-25 21:49:39 -05000ed15803474cd7d3d8228a642e9e2599a840707dRemoving ifdefs that are only for E3SM and only on a specific machineeditsrc/CLUBB_core/lapack_wrap.F90src/CLUBB_core/advance_clubb_core_module.F90src/generalized_grid_test.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/mixing_length.F9086f7a6081cc525e6d953cebc42d4e5962d7e24f21782443428000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving the CLUBBND_CAM option, not sure what it was for, it's not defined in this repo or any of our host model repos 2026-06-25 22:10:28 -050086f7a6081cc525e6d953cebc42d4e5962d7e24f2Removing the CLUBBND_CAM option, not sure what it was for, it's not defined in this repo or any of our host model 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Hueblerhuebler@uwm.eduRemoving unused variables 2026-06-25 22:46:25 -0500955aa780e3a47b6accf7af68d85f76ad53baff39Removing unused variableseditclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyeditsrc/generalized_grid_test.F90editclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pyeditclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyeditsrc/Input_fields/input_fields.F90editclubb_python_api/f2py_fortran_wrappers/advance_windm_edsclrm_module_wrapper.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/pdf_closure_module.F90editclubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90editclubb_python_api/tests/test_call_tree_pdf_closure_driver.pyeditclubb_python_driver/advance_clubb_core.pyeditsrc/clubb_driver.F90editsrc/Microphys/pdf_hydromet_microphys_wrapper.F90editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editclubb_python_api/clubb_f2py.pyfgithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther 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Hueblerhuebler@uwm.eduUpdating python contract audit to better detect API arg list discrepancies from the underlying fortran arg lists. Also adding a temporary handoff file and improving the python api fix shortcut (cherry picked from commit 47106db56945d6d0c1f962cc77d205db99d60f4f) 2026-06-25 23:02:29 -05001ba1f81f6b41e649dfe497947dc4c22c69f38f6cUpdating python contract audit to better detect API arg list discrepancies from the underlying fortran arg lists. Also adding a temporary handoff file and improving the python api fix shortcuteditclubb_python_driver/advance_clubb_to_end.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyeditclubb_python_api/clubb_f2py.pyfeditclubb_python_api/tests/test_call_tree_advance_xp3.pyaddLLM_prompts/python_api_audit_handoff.mdeditclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyeditLLM_prompts/update_python_api_and_drivers.mdeditclubb_jax/clubb_case_initalization.pyeditclubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyeditclubb_python_api/tests/test_argument_contract_audit.pyeditclubb_jax/advance_clubb_to_end.pyeditclubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90editclubb_python_api/f2py_fortran_wrappers/advance_xp3_module_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.pyeditclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyeditclubb_python_driver/clubb_case_initalization.pyeditclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyeditclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyeditclubb_python_api/tests/test_call_tree_stats_accumulate.pyeditclubb_jax/advance_clubb_core.pyeditclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyeditclubb_python_api/tests/test_call_tree_advance_core.pyeditclubb_python_driver/advance_clubb_core.pyeditclubb_python_api/clubb_python/CLUBB_core/numerical_check.pyeditclubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/sigma_sqd_w_module.pyclubb_python_api/tests/test_call_tree_corr_varnce_module.pyclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyclubb_python_api/tests/test_call_tree_mixing_length.pyclubb_python_api/clubb_python/CLUBB_core/mixing_length.pyclubb_python_api/f2py_fortran_wrappers/ly93_pdf_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/adg1_adg2_3d_luhar_pdf.pyclubb_python_api/clubb_python/CLUBB_core/penta_bicgstab_solver.pyclubb_python_api/clubb_python/CLUBB_core/new_tsdadg_pdf.pyclubb_python_api/clubb_python/CLUBB_core/grid_class.pyclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf_main.pyclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyclubb_python_driver/radiation.pyclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pyclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyclubb_python_api/clubb_python/CLUBB_core/saturation.pyclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyclubb_python_api/f2py_fortran_wrappers/radiation_module_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.pyclubb_python_api/f2py_fortran_wrappers/adg1_adg2_3d_luhar_pdf_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/remapping_module.pyclubb_python_api/clubb_python/CLUBB_core/diffusion.pyclubb_python_api/tests/test_advance_core_subs.pyclubb_python_api/clubb_python/CLUBB_core/err_info_type_module.pyclubb_python_api/tests/test_call_tree_numerical_check.pyclubb_python_api/clubb_python/CLUBB_core/pos_definite_module.pyclubb_python_api/clubb_f2py.pyfclubb_python_api/clubb_python/CLUBB_core/turbulent_adv_pdf.pyclubb_python_api/clubb_python/CLUBB_core/calc_pressure.pyclubb_python_api/f2py_fortran_wrappers/new_tsdadg_pdf_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf.pyclubb_python_api/clubb_python/CLUBB_core/clip_explicit.pyclubb_python_api/clubb_python/CLUBB_core/sponge_layer_damping.pyclubb_python_api/tests/test_call_tree_splat.pyclubb_python_api/clubb_python/prescribe_forcings.pyclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyclubb_python_api/clubb_python/CLUBB_core/sfc_varnce_module.pyclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyclubb_python_api/clubb_python/CLUBB_core/parameters_tunable.pyclubb_python_api/clubb_python/CLUBB_core/numerical_check.pyclubb_python_api/clubb_python/CLUBB_core/pdf_parameter_module.pyclubb_python_api/clubb_python/CLUBB_core/advance_helper.pyLLM_prompts/python_api_audit_handoff.mdclubb_python_api/tests/test_argument_contract_audit.pyclubb_python_api/clubb_python/CLUBB_core/corr_varnce_module.pyclubb_python_api/clubb_python/CLUBB_core/new_pdf.pyclubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.pyclubb_python_api/f2py_fortran_wrappers/new_hybrid_pdf_wrapper.F90clubb_python_api/f2py_fortran_wrappers/new_pdf_wrapper.F90clubb_python_api/tests/test_call_tree_turbulent_adv_pdf.pyclubb_python_api/clubb_python/radiation.pyclubb_python_api/clubb_python/CLUBB_core/ly93_pdf.pyclubb_python_api/clubb_python/CLUBB_core/mono_flux_limiter.pyclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyclubb_python_api/f2py_fortran_wrappers/sponge_layer_damping_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/new_pdf_main.pyclubb_python_api/clubb_python/CLUBB_core/skx_module.pyclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.py0da14a07a2ef02d9517c80c18d0a3a285dc08d041782446642000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduOur argument_contract_audit.py script checks if the python_api matches the underlying fortran - this makes it more strict, and fixes many of the inconsistencies it found. (cherry picked from commit f5c3b99d56499acc2a706cf024dd802f73030dd2) 2026-06-25 23:04:02 -05000da14a07a2ef02d9517c80c18d0a3a285dc08d04Our argument_contract_audit.py script checks if the python_api matches the underlying fortran - this makes it more strict, and fixes many of the inconsistencies it found.editclubb_python_api/clubb_python/CLUBB_core/err_info_type_module.pyeditclubb_python_api/clubb_python/prescribe_forcings.pyeditclubb_python_api/clubb_python/CLUBB_core/pos_definite_module.pyeditclubb_python_api/f2py_fortran_wrappers/new_tsdadg_pdf_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pyeditclubb_python_api/clubb_python/CLUBB_core/turbulent_adv_pdf.pyeditclubb_python_api/clubb_python/CLUBB_core/sigma_sqd_w_module.pyeditclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyeditclubb_python_api/clubb_f2py.pyfeditclubb_python_api/tests/test_advance_core_subs.pyeditclubb_python_api/clubb_python/CLUBB_core/mixing_length.pyeditclubb_python_api/f2py_fortran_wrappers/adg1_adg2_3d_luhar_pdf_wrapper.F90editclubb_python_api/tests/test_call_tree_turbulent_adv_pdf.pyeditclubb_python_api/clubb_python/CLUBB_core/sponge_layer_damping.pyeditclubb_python_api/clubb_python/CLUBB_core/numerical_check.pyeditclubb_python_api/clubb_python/CLUBB_core/clip_explicit.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyeditclubb_python_api/clubb_python/CLUBB_core/mono_flux_limiter.pyeditclubb_python_api/f2py_fortran_wrappers/new_hybrid_pdf_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/parameters_tunable.pyeditclubb_python_api/f2py_fortran_wrappers/radiation_module_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/new_pdf_main.pyeditclubb_python_api/tests/test_call_tree_splat.pyeditclubb_python_api/f2py_fortran_wrappers/sponge_layer_damping_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/adg1_adg2_3d_luhar_pdf.pyeditclubb_python_api/clubb_python/CLUBB_core/new_pdf.pyeditclubb_python_api/clubb_python/CLUBB_core/diffusion.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyeditclubb_python_api/clubb_python/CLUBB_core/skx_module.pyeditclubb_python_api/clubb_python/CLUBB_core/grid_class.pyeditclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyeditclubb_python_api/tests/test_call_tree_corr_varnce_module.pyeditclubb_python_api/clubb_python/CLUBB_core/penta_bicgstab_solver.pyeditclubb_python_api/clubb_python/CLUBB_core/saturation.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_helper.pyeditclubb_python_api/f2py_fortran_wrappers/new_pdf_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyeditclubb_python_api/clubb_python/CLUBB_core/corr_varnce_module.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyeditclubb_python_driver/radiation.pyeditclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.pyeditclubb_python_api/f2py_fortran_wrappers/ly93_pdf_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf.pydeleteLLM_prompts/python_api_audit_handoff.mdeditclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf_main.pyeditclubb_python_api/tests/test_call_tree_numerical_check.pyeditclubb_python_api/clubb_python/CLUBB_core/ly93_pdf.pyeditclubb_python_api/clubb_python/CLUBB_core/new_tsdadg_pdf.pyeditclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyeditclubb_python_api/tests/test_argument_contract_audit.pyeditclubb_python_api/tests/test_call_tree_mixing_length.pyeditclubb_python_api/clubb_python/radiation.pyeditclubb_python_api/clubb_python/CLUBB_core/remapping_module.pyeditclubb_python_api/clubb_python/CLUBB_core/calc_pressure.pyeditclubb_python_api/clubb_python/CLUBB_core/sfc_varnce_module.pyeditclubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.pyeditclubb_python_api/clubb_python/CLUBB_core/pdf_parameter_module.pyclubb_python_api/clubb_python/clubb_api.pyclubb_python_api/tests/test_call_tree_mixing_length.pyclubb_python_api/clubb_python/CLUBB_core/mixing_length.pyclubb_python_api/clubb_python/CLUBB_core/adg1_adg2_3d_luhar_pdf.pyclubb_python_api/clubb_python/CLUBB_core/new_tsdadg_pdf.pyclubb_python_api/tests/test_call_tree_transport.pyclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf_main.pyclubb_python_driver/advance_clubb_core.pyclubb_python_api/f2py_fortran_wrappers/mixing_length_wrapper.F90clubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyclubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90clubb_python_api/tests/test_init_pressure.pyclubb_python_api/tests/test_udt_return_contract.pyclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyclubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.pyclubb_python_api/clubb_python/CLUBB_core/remapping_module.pyclubb_python_api/clubb_python/CLUBB_core/diffusion.pyclubb_python_driver/clubb_case_initalization.pyclubb_python_api/tests/test_advance_core_subs.pyclubb_python_api/tests/test_call_tree_stats_accumulate.pyclubb_python_api/clubb_python/CLUBB_core/err_info_type_module.pyclubb_python_api/tests/test_stats.pyclubb_python_api/tests/test_call_tree_precipitation_fraction.pyclubb_python_api/clubb_f2py.pyfclubb_python_api/clubb_python/CLUBB_core/calc_pressure.pyclubb_python_api/tests/test_call_tree_ly93.pyclubb_python_api/tests/test_call_tree_sponge.pyclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf.pyclubb_python_api/clubb_python/CLUBB_core/sponge_layer_damping.pyclubb_python_api/tests/test_call_tree_luhar.pyclubb_python_api/clubb_python/prescribe_forcings.pyclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyclubb_python_api/clubb_python/CLUBB_core/pdf_parameter_module.pyclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/advance_helper.pyclubb_python_api/clubb_python/CLUBB_core/new_pdf.pyclubb_python_api/tests/test_call_tree_new_pdf.pyclubb_python_api/tests/test_call_tree_skx.pyclubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.pyclubb_jax/clubb_case_initalization.pyclubb_python_api/tests/test_call_tree_new_hybrid_pdf.pyclubb_python_api/tests/test_call_tree_mono_flux.pyclubb_python_api/tests/test_call_tree_advance_xp3.pyclubb_python_driver/advance_clubb_to_end.pyclubb_python_api/clubb_python/radiation.pyclubb_python_api/clubb_python/CLUBB_core/ly93_pdf.pyclubb_python_api/f2py_fortran_wrappers/new_hybrid_pdf_main_wrapper.F90clubb_python_api/tests/test_call_tree_new_tsdadg.pyclubb_python_api/tests/test_call_tree_advance_core.pyclubb_python_api/tests/test_call_tree_remap.pyclubb_python_api/clubb_python/CLUBB_core/skx_module.pyclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pye73f5d17f344ccfbf4741d978a7e0dd60a06fb251782446735000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduadvance_clubb_core.py cleanup and removing strange compat_kwargs usages that seem like artifacts of laziness (cherry picked from commit 9056400901e270333b80ee8f66af055d395b8020) 2026-06-25 23:05:35 -0500e73f5d17f344ccfbf4741d978a7e0dd60a06fb25advance_clubb_core.py cleanup and removing strange compat_kwargs usages that seem like artifacts of lazinesseditclubb_python_api/clubb_python/CLUBB_core/diffusion.pyeditclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyeditclubb_python_api/tests/test_call_tree_ly93.pyeditclubb_python_api/tests/test_stats.pyeditclubb_python_api/tests/test_call_tree_new_pdf.pyeditclubb_python_driver/advance_clubb_to_end.pyeditclubb_python_api/clubb_python/CLUBB_core/new_pdf.pyeditclubb_python_api/f2py_fortran_wrappers/new_hybrid_pdf_main_wrapper.F90editclubb_python_api/tests/test_call_tree_mono_flux.pyeditclubb_python_driver/advance_clubb_core.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyeditclubb_python_api/clubb_python/CLUBB_core/sponge_layer_damping.pyeditclubb_python_api/tests/test_call_tree_new_tsdadg.pyeditclubb_python_api/clubb_python/prescribe_forcings.pyeditclubb_python_api/clubb_python/CLUBB_core/remapping_module.pyeditclubb_python_api/tests/test_call_tree_new_hybrid_pdf.pyeditclubb_python_api/tests/test_call_tree_mixing_length.pyeditclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyeditclubb_python_api/clubb_python/CLUBB_core/new_tsdadg_pdf.pyeditclubb_python_api/clubb_python/clubb_api.pyeditclubb_python_api/tests/test_call_tree_advance_core.pyeditclubb_python_api/tests/test_init_pressure.pyeditclubb_python_api/tests/test_call_tree_remap.pyeditclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf.pyeditclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90editclubb_jax/clubb_case_initalization.pyeditclubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.pyeditclubb_python_api/tests/test_advance_core_subs.pyeditclubb_python_api/tests/test_call_tree_stats_accumulate.pyeditclubb_python_api/clubb_python/CLUBB_core/err_info_type_module.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_helper.pyeditclubb_python_api/clubb_python/radiation.pyeditclubb_python_api/clubb_python/CLUBB_core/skx_module.pyeditclubb_python_api/tests/test_udt_return_contract.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyeditclubb_python_api/clubb_python/CLUBB_core/ly93_pdf.pyeditclubb_python_api/tests/test_call_tree_skx.pyeditclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyeditclubb_python_api/tests/test_call_tree_transport.pyeditclubb_python_api/tests/test_call_tree_sponge.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.pyeditclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyeditclubb_python_api/tests/test_call_tree_precipitation_fraction.pyeditclubb_python_driver/clubb_case_initalization.pyeditclubb_python_api/clubb_python/CLUBB_core/adg1_adg2_3d_luhar_pdf.pyeditclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyeditclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyeditclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyeditclubb_python_api/clubb_python/CLUBB_core/mixing_length.pyeditclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf_main.pyeditclubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90editclubb_python_api/tests/test_call_tree_luhar.pyeditclubb_python_api/clubb_f2py.pyfeditclubb_python_api/clubb_python/CLUBB_core/calc_pressure.pyeditclubb_python_api/tests/test_call_tree_advance_xp3.pyeditclubb_python_api/clubb_python/CLUBB_core/pdf_parameter_module.pyeditclubb_python_api/f2py_fortran_wrappers/mixing_length_wrapper.F90clubb_jax/advance_clubb_core.pyclubb_python_api/clubb_python/CLUBB_core/error_code.pyclubb_jax/advance_clubb_to_end.pyclubb_python_api/clubb_python/clubb_api.pyclubb_python_api/tests/test_call_tree_luhar.pyclubb_python_api/clubb_python/CLUBB_core/sponge_layer_damping.pyclubb_python_api/tests/test_call_tree_mixing_length.pyclubb_python_api/clubb_python/prescribe_forcings.pyclubb_python_api/clubb_python/CLUBB_core/mixing_length.pyclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyclubb_python_api/clubb_python/CLUBB_core/parameters_tunable.pyclubb_python_api/clubb_python/CLUBB_core/adg1_adg2_3d_luhar_pdf.pyclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyclubb_python_api/clubb_python/CLUBB_core/pdf_parameter_module.pyLLM_prompts/port_underlying_fortran_to_other_languages.mdclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf_main.pyclubb_python_driver/advance_clubb_core.pyclubb_python_api/tests/test_argument_contract_audit.pyclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyclubb_python_api/tests/test_call_tree_new_pdf.pyclubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.pyLLM_prompts/SHORTCUTS.mdclubb_python_api/clubb_python/CLUBB_core/loss_driver.pyclubb_jax/clubb_case_initalization.pyclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyclubb_python_api/f2py_fortran_wrappers/clubb_loss_driver_wrapper.F90clubb_python_api/tests/test_call_tree_pdf_closure_driver.pyclubb_python_api/tests/test_call_tree_mono_flux.pyclubb_python_api/t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Hueblerhuebler@uwm.eduImproving audit script even more, fixing issues it found. Also making advance_clubb_core.py nice and making an LLM shortcut for how to repeat the process (cherry picked from commit 25b41435d7bfbbe03f2736440bdcbf4330f863ab) 2026-06-25 23:49:56 -05001fa8fdebc019e2807e0031f7233ef85243f80ad6Improving audit script even more, fixing issues it found. Also making advance_clubb_core.py nice and making an LLM shortcut for how to repeat the processeditclubb_jax/advance_clubb_to_end.pyeditclubb_python_api/clubb_python/CLUBB_core/mixing_length.pyeditclubb_python_api/tests/test_call_tree_new_pdf.pyeditclubb_python_api/tests/test_call_tree_mixing_length.pyeditclubb_python_api/clubb_f2py.pyfeditclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyeditclubb_jax/advance_clubb_core.pyeditclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyeditclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyeditclubb_python_api/clubb_python/CLUBB_core/error_code.pyeditclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyeditLLM_prompts/SHORTCUTS.mdeditclubb_python_api/clubb_python/CLUBB_core/remapping_module.pyeditclubb_python_api/tests/test_call_tree_luhar.pyeditclubb_python_driver/advance_clubb_to_end.pyeditclubb_python_api/clubb_python/CLUBB_core/sponge_layer_damping.pyeditclubb_python_api/tests/test_call_tree_matrix_solver_wrapper.pyeditclubb_python_api/clubb_python/CLUBB_core/pdf_parameter_module.pyeditclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyaddLLM_prompts/port_underlying_fortran_to_other_languages.mdeditclubb_python_api/clubb_python/CLUBB_core/diffusion.pyeditclubb_python_api/clubb_python/clubb_api.pyeditclubb_python_driver/clubb_case_initalization.pyeditclubb_python_api/tests/test_call_tree_stats_accumulate.pyeditclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyeditclubb_python_api/clubb_python/CLUBB_core/loss_driver.pyeditclubb_python_api/tests/test_stats.pyeditclubb_python_api/clubb_python/CLUBB_core/new_pdf_main.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_clubb_core.pyeditclubb_python_api/clubb_python/CLUBB_core/mono_flux_limiter.pyeditclubb_python_api/f2py_fortran_wrappers/clubb_loss_driver_wrapper.F90editclubb_python_api/tests/test_argument_contract_audit.pyeditclubb_python_api/clubb_python/CLUBB_core/matrix_solver_wrapper.pyeditclubb_python_api/tests/test_call_tree_advance_xp3.pyeditclubb_python_api/tests/test_call_tree_mono_flux.pyeditclubb_python_api/tests/test_call_tree_pdf_closure_driver.pyeditclubb_python_driver/advance_clubb_core.pyeditclubb_python_api/tests/test_call_tree_precipitation_fraction.pyeditclubb_python_api/clubb_python/CLUBB_core/parameters_tunable.pyeditclubb_python_api/clubb_python/CLUBB_core/adg1_adg2_3d_luhar_pdf.pyeditclubb_python_api/tests/test_advance_core_subs.pyeditclubb_python_api/tests/argument_list_enforcer/argument_contract_audit.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyeditclubb_python_api/clubb_python/prescribe_forcings.pyeditclubb_jax/clubb_case_initalization.pyeditclubb_python_api/clubb_python/CLUBB_core/new_hybrid_pdf_main.pyrun_scripts/READMErun_scripts/run_bindiff_all.pytests/READMEtests/run_bindiff_w_flags.py7c083496c42caa1b7d18c781134f0cc18ae947481782494071000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBuilding varying flags bindiff into run_bindiff_all.py, this just makes sense and helps fix the varying flags BFB test 2026-06-26 12:14:31 -05007c083496c42caa1b7d18c781134f0cc18ae94748Building varying flags bindiff into run_bindiff_all.py, this just makes sense and helps fix the varying flags BFB testeditrun_scripts/run_bindiff_all.pyeditrun_scripts/READMEedittests/READMEedittests/run_bindiff_w_flags.pygithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse547http://carson.math.uwm.edu/jenkins/view/all/job/clubb_timestep_gfortran_tests/547/Started by an SCM change5462ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fb2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fbrefs/remotes/origin/master2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fb2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fbrefs/remotes/origin/master2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fb2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fbrefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#546613838605049clubb_timestep_gfortran_tests #546546false5465144SUCCESS1782288790386http://carson.math.uwm.edu/jenkins/view/all/job/clubb_timestep_gfortran_tests/546/README2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fb1782247864000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRecently clubb_BFB_varying_flags_gfortran_test failed due to a script bug, dispite it being BFB. RESOLVED:2a334f87922dfaceb7d3a37b1924d374f1b986d5 2026-06-23 15:51:04 -05002ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fbRecently clubb_BFB_varying_flags_gfortran_test failed due to a script bug, dispite it being BFB. RESOLVED:2a334f87922dfaceb7d3a37b1924d374f1b986d5editREADMEgithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse547http://carson.math.uwm.edu/jenkins/view/all/job/clubb_timestep_gfortran_tests/547/545http://carson.math.uwm.edu/jenkins/view/all/job/clubb_timestep_gfortran_tests/545/