Started by an SCM change5462ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fb2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fbrefs/remotes/origin/master2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fb2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fbrefs/remotes/origin/master2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fb2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fbrefs/remotes/origin/masterhttps://github.com/larson-group/clubb.githttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_timestep_gfortran_tests/detail/clubb_timestep_gfortran_tests/546/artifactshttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_timestep_gfortran_tests/detail/clubb_timestep_gfortran_tests/546/changeshttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_timestep_gfortran_tests/detail/clubb_timestep_gfortran_tests/546/http://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_timestep_gfortran_tests/detail/clubb_timestep_gfortran_tests/546/testsfalseCompileRun Timesteps Testfalse#546613838605049clubb_timestep_gfortran_tests #546546false5465144SUCCESS1782288790386http://carson.math.uwm.edu/jenkins/view/all/job/clubb_timestep_gfortran_tests/546/README2ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fb1782247864000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRecently clubb_BFB_varying_flags_gfortran_test failed due to a script bug, dispite it being BFB. RESOLVED:2a334f87922dfaceb7d3a37b1924d374f1b986d5 2026-06-23 15:51:04 -05002ca3ddc3ece9ae81f9b9acc08d3be93c4aab01fbRecently clubb_BFB_varying_flags_gfortran_test failed due to a script bug, dispite it being BFB. RESOLVED:2a334f87922dfaceb7d3a37b1924d374f1b986d5editREADMEgithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther HueblerhueblerfalseStarted by an SCM change547955aa780e3a47b6accf7af68d85f76ad53baff39955aa780e3a47b6accf7af68d85f76ad53baff39refs/remotes/origin/master955aa780e3a47b6accf7af68d85f76ad53baff39955aa780e3a47b6accf7af68d85f76ad53baff39refs/remotes/origin/master955aa780e3a47b6accf7af68d85f76ad53baff39955aa780e3a47b6accf7af68d85f76ad53baff39refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#547637442605049clubb_timestep_gfortran_tests 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up run_scripts (#1320) * Cleaning up run_scripts by removing old bash files, also moving many scripts into a new tests/ directory, since those are tests. Fixing a small bug in clubb_driver as well, just needed to move a print statement, otherwise it tries writing to a closed file. * A little cleanup and better READMEs for run_scripts and tests 2026-06-25 21:06:57 -0500e04956358685c2869358db8b6d46d16cf9744b03Cleaning up run_scripts (#1320)deleterun_scripts/run_scm_all.bashdeleterun_scripts/run_thread_test.pydeleterun_scripts/ensemble_run/input/.gitignoreeditjenkins_tests/clubb_monoflux_CPU_vs_GPU_diff/Jenkinsfiledeleterun_scripts/run_timestep_tests.bashdeleterun_scripts/check_mirrored_multi_col_output.pyaddrun_scripts/run_clubb_and_pyplotgen.pyeditrun_scripts/run_scm_loss.pyeditrun_scripts/READMEaddtests/READMEeditjenkins_tests/clubb_generalized_vertical_grid_test/Jenkinsfiledeleterun_scripts/run_scm_collect.basheditpostprocessing/pyplotgen/pyplotgen.pyeditsrc/error.F90deleterun_scripts/run_timestep_tests.pyeditsrc/clubb_driver.F90addtests/test_fatal_error_handling.pydeleterun_scripts/test_fatal_error_handling.bashaddtests/run_silhs_test.pydeleterun_scripts/run_scm_debug.basheditjenkins_tests/clubb_python_test/Jenkinsfileeditrun_scripts/run_clubb_w_varying_flags.pydeleterun_scripts/check_budget_balance.pyeditpostprocessing/latin_hypercube_plotting/variance_analysis_scripts/rms_vs_sample_points/silhs_varying_sp_output.shdeleterun_scripts/ensemble_run/ensembles/.gitignoredeleterun_scripts/run_bindiff_w_flags_requirements.txtdeleterun_scripts/run_python_vs_fortran_cases.pydeleterun_scripts/fire_tuner.pydeleterun_scripts/run_G_unit_tests.bashdeletejenkins_tests/clubb_uninit_var_oracle_test/Jenkinsfileaddtests/test_fire_tuner.pydeleterun_scripts/run_bindiff_w_flags_config_core_flags.jsondeleterun_scripts/generate_seed.bashaddutilities/create_case_namelist.pyeditjenkins_tests/clubb_G_unit_gfortran_tests/Jenkinsfileeditjenkins_tests/clubb_generalized_vert_grid_host_flags/Jenkinsfileaddtests/check_mirrored_multi_col_output.pyaddtests/run_loss_output_consistency.pyeditREADMEeditjenkins_tests/clubb_openmp_gfortran_test/Jenkinsfiledeleterun_scripts/ensemble_run/create_output.basheditrun_scripts/run_scm.pyaddtests/run_python_vs_fortran_cases.pyaddtests/run_bindiff_w_flags.pydeleterun_scripts/run_clubb_and_pyplotgen.bashdeleterun_scripts/run_stats_output_consistency.pyeditjenkins_tests/clubb_G_unit_reverse_dir_grid_test/Jenkinsfiledeleterun_scripts/run_scm_collect_suite.bashaddtests/run_thread_test.pyaddtests/run_jax_vs_fortran_cases.pydeleterun_scripts/run_bindiff_w_flags_config_host_flags.jsondeleterun_scripts/time_scm_all.bashaddtests/run_timestep_tests.pyaddtests/check_budget_balance.pyeditrun_scripts/run_bindiff_all.pydeleterun_scripts/run_jax_vs_fortran_cases.pydeleterun_scripts/test_monoflux_limiter_GPU.pyeditjenkins_tests/clubb_stats_output_consistency_gfortran_test/Jenkinsfiledeleterun_scripts/test_fatal_error_handling.pydeleterun_scripts/ensemble_run/READMEeditjenkins_tests/clubb_restart_silhs_gfortran_test/Jenkinsfiledeleterun_scripts/check_multi_col_error.pyaddinput/flag_sets/run_bindiff_w_flags_config_core_flags.jsonaddtests/run_clubb_conv_test.pyeditclubb_python_driver/README.mddeleterun_scripts/fill_holes.pyeditjenkins_tests/clubb_silhs_convergence_gfortran/Jenkinsfiledeleterun_scripts/ensemble_run/ensemble_run.bashedittuner/tuning_worker.pyaddinput/flag_sets/run_bindiff_w_flags_config_host_flags.jsoneditsrc/CMakeLists.txtaddtests/run_benchmark_converter_test.pyeditjenkins_tests/clubb_check_budget_balance_gfortran/Jenkinsfileeditjenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfileaddtests/run_stats_output_consistency.pydeletejenkins_tests/clubb_cmake_output_matching/Jenkinsfiledeleterun_scripts/ensemble_run/submission/.gitignoredeleterun_scripts/run_silhs_test.bashaddtests/run_restart_test.pyeditjenkins_tests/clubb_timestep_convergence_gfortran_test/Jenkinsfiledeleterun_scripts/ensemble_run/output/.gitignoredeleterun_scripts/run_tuner.bashdeleterun_scripts/run_thread_test.bashaddutilities/create_multi_col_params.pyaddinput/flag_sets/run_bindiff_w_flags_config_example.jsoneditclubb_jax/README.mddeleterun_scripts/run_bindiff_varying_flags_output.pydeleterun_scripts/run_loss_output_consistency.pydeleterun_scripts/run_bindiff_w_flags_config_example.jsondeleterun_scripts/run_bindiff_w_flags.pyeditpostprocessing/timestep_convergence_test.bashdeleterun_scripts/run_silhs_test.pyeditjenkins_tests/clubb_restart_gfortran_test/Jenkinsfiledeleterun_scripts/diff_netcdf_outputs.pyadddash_app/fill_holes.pyedittuner/test_tuning_strategy.pyedittuner/README.mddeleterun_scripts/create_case_namelist.pyeditclubb_jax/JAX_CONVERSION_PLAN.mdeditjenkins_tests/clubb_timestep_gfortran_tests/Jenkinsfileeditjenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfileeditjenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfiledeleterun_scripts/RUN_CASESdeleterun_scripts/run_bindiff_all.bashaddtests/run_G_unit_tests.pyeditjenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfiledeleterun_scripts/create_multi_col_params.pyeditsrc/generalized_grid_test.F90editjenkins_tests/clubb_fire_tuning_gfortran_test/Jenkinsfiledeleterun_scripts/run_restart_test.pydeleterun_scripts/run_clubb_conv_test.pydeleterun_scripts/run_scm.basheditLLM_prompts/update_python_api_and_drivers.mddeletesrc/int2txt.F90deleterun_scripts/run_clubb_conv_test.bashdeleterun_scripts/run_benchmark_converter_test.pyedittuner/paths.pydeleterun_scripts/run_G_unit_tests.pyeditrun_scripts/run_tuner.pydeleterun_scripts/ensemble_run/ensemble_setup.bashaddtests/test_monoflux_limiter_GPU.pysrc/CMakeLists.txtrun_scripts/READMEsrc/jacobian.F90READMEinput_misc/jacobian.inrun_scripts/run_jacobian.bash5512bff0caa1b179b2a03a5512fc3de2c866b0cb1782441296000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving jacobian code - it has not worked in a long time 2026-06-25 21:34:56 -05005512bff0caa1b179b2a03a5512fc3de2c866b0cbRemoving jacobian code - it has not worked in a long timeeditsrc/CMakeLists.txteditREADMEdeletesrc/jacobian.F90deleteinput_misc/jacobian.indeleterun_scripts/run_jacobian.basheditrun_scripts/READMEsrc/Input_fields/recl.ince1ca53920f7095d09c5dde5b9502f4056c481b481782441838000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving recl.inc, just dead code for an outdated issue 2026-06-25 21:43:58 -0500e1ca53920f7095d09c5dde5b9502f4056c481b48Removing recl.inc, just dead code for an outdated issuedeletesrc/Input_fields/recl.incsrc/CLUBB_core/lapack_wrap.F900ed15803474cd7d3d8228a642e9e2599a840707d1782442179000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving ifdefs that are only for E3SM and only on a specific machine 2026-06-25 21:49:39 -05000ed15803474cd7d3d8228a642e9e2599a840707dRemoving ifdefs that are only for E3SM and only on a specific machineeditsrc/CLUBB_core/lapack_wrap.F90src/CLUBB_core/advance_clubb_core_module.F90src/generalized_grid_test.F90src/CLUBB_core/clubb_api_module.F90src/CLUBB_core/mixing_length.F9086f7a6081cc525e6d953cebc42d4e5962d7e24f21782443428000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving the CLUBBND_CAM option, not sure what it was for, it's not defined in this repo or any of our host model repos 2026-06-25 22:10:28 -050086f7a6081cc525e6d953cebc42d4e5962d7e24f2Removing the CLUBBND_CAM option, not sure what it was for, it's not defined in this repo or any of our host model reposeditsrc/CLUBB_core/clubb_api_module.F90editsrc/generalized_grid_test.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/mixing_length.F90src/generalized_grid_test.F90src/CLUBB_core/pdf_closure_module.F90clubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90src/Input_fields/input_fields.F90clubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyclubb_python_api/tests/test_call_tree_pdf_closure_driver.pysrc/Microphys/pdf_hydromet_microphys_wrapper.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/clubb_driver.F90clubb_python_driver/advance_clubb_core.pyclubb_python_api/f2py_fortran_wrappers/advance_windm_edsclrm_module_wrapper.F90clubb_python_api/clubb_f2py.pyfclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.py955aa780e3a47b6accf7af68d85f76ad53baff391782445585000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving unused variables 2026-06-25 22:46:25 -0500955aa780e3a47b6accf7af68d85f76ad53baff39Removing unused variableseditclubb_python_api/clubb_python/CLUBB_core/pdf_closure.pyeditsrc/generalized_grid_test.F90editclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pyeditclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyeditsrc/Input_fields/input_fields.F90editclubb_python_api/f2py_fortran_wrappers/advance_windm_edsclrm_module_wrapper.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/pdf_closure_module.F90editclubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90editclubb_python_api/tests/test_call_tree_pdf_closure_driver.pyeditclubb_python_driver/advance_clubb_core.pyeditsrc/clubb_driver.F90editsrc/Microphys/pdf_hydromet_microphys_wrapper.F90editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editclubb_python_api/clubb_f2py.pyfgithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther 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loss driver (#1303) * First set of commits for the new loss driver. * Improvements * Batching capabilities * Lot's of cleanup, simplifications, and consolidation * More testing * Python interfaces for the loss driver * Interface for tuner and tuner with modes. * Nice updates * Missed file * Little updates to fix inconsistencies in the plots and averaging ranges * Adding a script that converts sam and coamps netcdf files to a clubb named version, including things that need to be calculated. This fixes a bug where fields were being averaged before being calculated, see https://github.com/larson-group/clubb/issues/1284, but is currently only wired up in the new tuner and the dash app plotter * Making some things public for nvhpc * Organization and consistency test fix * Adding taylor diagram to tune tab, this needs taylor metrics to be computed so the loss driver needed to output this info. * Adding more fancy loss functions based on Taylor metrics and a way to switch how the loss is computed in the dash tuner * Making NaN in code not an issue * Mostly dash app improvements to plotting, also made subwindows for tuning * Tuner tracking by case * Removing stats time-variance code * Simplifying loss driver output - now loss metrics are output explicitly rather than as packaged taylor_metrics and having different versions for subwindows and such * Mainly ui updates and small simplifications * Improving comments and cleaning things up a bit * Removing strictness on stats window vs output interval, and adding a stats consistency test to tests for issues with batch size and output frequency and the windowing mode * Fixing openmp bug and making incomplete stats intervals not output, as it was before * Making jenkins test use standard stats, and fixing tiny bug that caused error running with debug+no rcp2 stats * Adding gate around bindiff, there's an edge case where a cosmetic diff can trigger a full-diff even in a failed case, which should otherwise be considered BFB and skipped. * Adding some README entries for the dash app and a python requirements file * Adding comments and little bug fix to dash app * Update to loss consistency test, making it simpler since stats consistency test covers most things. Also adding it to the stats consistency jenkins test since it is still similar * Cleanup and code consolidation, new jenkins test for tuner * Adding comments * Fixing little bugs * Slight improvement to stats_api * Small bug fix * Consolidating stats time setting 2026-06-17 23:16:26 -05002a334f87922dfaceb7d3a37b1924d374f1b986d5Clubb loss driver (#1303)adddash_app/plot_tab/profile_loss.pyaddrun_scripts/create_case_namelist.pyaddutilities/loss_metrics.pyaddrun_scripts/run_loss_output_consistency.pyeditdash_app/assets/12_tab_plots_theme.cssadddash_app/requirements.txteditdash_app/plot_tab/layout.pyeditdash_app/plot_tab/state.pyeditdash_app/plot_tab/plot_types/shared.pyeditclubb_python_api/clubb_python/clubb_api.pyeditsrc/SILHS/latin_hypercube_driver_module.F90editREADMEaddtuner/taylor_metrics.pyeditdash_app/plot_tab/plot_types/timeheight_plot.pyeditdash_app/plot_tab/callbacks_grid.pyaddtuner/job_runtime.pyadddash_app/tune_tab/__init__.pyadddash_app/tune_tab/tab.pyeditsrc/clubb_driver_test.F90addtuner/tuning_strategy.pyeditdash_app/plot_tab/callbacks_controls.pyeditdash_app/plot_tab/plot_types/profile_plot.pyeditsrc/CLUBB_core/pdf_closure_module.F90addutilities/__init__.pyeditdash_app/run_tab/layout.pyadddash_app/assets/13_tab_tune_theme.csseditsrc/CLUBB_core/stats_netcdf.F90adddash_app/assets/37_run_console_state.jseditclubb_python_driver/advance_clubb_to_end.pyeditrun_scripts/run_scm.pyaddclubb_python_api/clubb_python/_runtime_loader.pyadddash_app/tune_tab/callbacks_settings.pyaddjenkins_tests/clubb_stats_output_consistency_gfortran_test/Jenkinsfileeditsrc/CLUBB_core/clubb_api_module.F90editdash_app/plot_tab/benchmark_overlay.pyeditdash_app/plot_tab/plot_types/budget_plot.pyadddash_app/tune_tab/runtime.pyaddtuner/README.mdaddrun_scripts/run_scm_loss.pyeditdash_app/app.pyaddsrc/clubb_loss_driver.F90editsrc/CMakeLists.txteditclubb_python_api/clubb_python/__init__.pyaddtuner/__init__.pyeditrun_scripts/run_bindiff_all.pyeditrun_scripts/create_multi_col_params.pyeditdash_app/plot_tab/plot_types/subcolumn_plot.pyeditclubb_python_api/f2py_fortran_wrappers/stats_netcdf_wrapper.F90addsrc/clubb_loss_driver_test.F90editclubb_python_api/clubb_python/CLUBB_core/stats_netcdf.pyaddclubb_python_api/f2py_fortran_wrappers/clubb_loss_driver_wrapper.F90editdash_app/plot_tab/callbacks_case.pyaddtuner/case_defaults.jsoneditsrc/CLUBB_core/error_code.F90editclubb_python_driver/clubb_case_initalization.pyaddjenkins_tests/clubb_new_tuner_test/Jenkinsfileadddash_app/tune_tab/state.pyaddsrc/clubb_standalone_loss.F90addtuner/tuning_scheduler.pyaddjenkins_tests/LLM_FAILURE_AUTOMATION_DESIGN.mdaddtuner/clubb_loss_driver.pyeditdash_app/run_tab/callbacks_console.pyadddash_app/tune_tab/discovery.pyaddtuner/case_defaults.pyadddash_app/tune_tab/callbacks_display.pyaddtuner/clubb_loss_driver_test.pyaddrun_scripts/run_stats_output_consistency.pyadddash_app/README.mdeditsrc/clubb_driver.F90addutilities/benchmark_converter.pyaddclubb_python_api/clubb_python/CLUBB_core/loss_driver.pyaddtuner/status.pyaddtuner/paths.pyaddtuner/tune_clubb.pyaddrun_scripts/run_benchmark_converter_test.pyadddash_app/assets/36_tune_ui_resize.jsaddtuner/request.pyeditclubb_python_api/clubb_f2py.pyfaddtuner/tuning_worker.pyeditdash_app/plot_tab/callbacks_params.pyaddtuner/test_tuning_strategy.pyadddash_app/tune_tab/layout.pyaddrun_scripts/run_tuner_job.pyadddash_app/tune_tab/callbacks_runs.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse546http://carson.math.uwm.edu/jenkins/view/all/job/clubb_timestep_gfortran_tests/546/544http://carson.math.uwm.edu/jenkins/view/all/job/clubb_timestep_gfortran_tests/544/