Started by an SCM change4597ef48bd549f41d296f44145ceda190172ceb1f797ef48bd549f41d296f44145ceda190172ceb1f7refs/remotes/origin/master97ef48bd549f41d296f44145ceda190172ceb1f797ef48bd549f41d296f44145ceda190172ceb1f7refs/remotes/origin/master97ef48bd549f41d296f44145ceda190172ceb1f797ef48bd549f41d296f44145ceda190172ceb1f7refs/remotes/origin/masterhttps://github.com/larson-group/clubb.githttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_release_diff_test/detail/clubb_release_diff_test/45/artifactshttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_release_diff_test/detail/clubb_release_diff_test/45/changeshttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_release_diff_test/detail/clubb_release_diff_test/45/http://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_release_diff_test/detail/clubb_release_diff_test/45/testsfalseCheckout Clubb and Clubb_ReleaseDifffalse#4510841521419302clubb_release_diff_test #4545false452884SUCCESS1616574968256http://carson.math.uwm.edu/jenkins/view/all/job/clubb_release_diff_test/45/utilities/analyze_sensitivity_matrix.pyutilities/test_analyzeSensMatrix.py97ef48bd549f41d296f44145ceda190172ceb1f71616515955000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduFix a bug in the calculation of dparamsSoln in the case that the parameter is transformed from [0,1] to [0,infinity]. Also clean up the printouts and code comments. For #910. 2021-03-23 11:12:35 -050097ef48bd549f41d296f44145ceda190172ceb1f7Fix a bug in the calculation of dparamsSolneditutilities/analyze_sensitivity_matrix.pyeditutilities/test_analyzeSensMatrix.pygithttp://carson.math.uwm.edu/jenkins/user/vlarsonVince LarsonvlarsonfalseStarted by an SCM change46f3880447cdc29ebab35455c2141880dc6528061bf3880447cdc29ebab35455c2141880dc6528061brefs/remotes/origin/masterf3880447cdc29ebab35455c2141880dc6528061bf3880447cdc29ebab35455c2141880dc6528061brefs/remotes/origin/masterf3880447cdc29ebab35455c2141880dc6528061bf3880447cdc29ebab35455c2141880dc6528061brefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#4633106491419302clubb_release_diff_test #4646false462934SUCCESS1616661370655http://carson.math.uwm.edu/jenkins/view/all/job/clubb_release_diff_test/46/utilities/analyze_sensitivity_matrix.pyf04e934693e578ba72f15ce6ea3de917c62e52ba1616594162000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduPrint more variables and add assertion checks to test whether svdInvrs is truly the inverse and also whether paramsSoln truly solves the system of equations. For #910. 2021-03-24 08:56:02 -0500f04e934693e578ba72f15ce6ea3de917c62e52baPrint more variables and add assertion checkseditutilities/analyze_sensitivity_matrix.pyutilities/analyze_sensitivity_matrix.py0547b8c6272c91bced78603040c3866887961c811616594527000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduChange "print" to "sys.exit". For #910. 2021-03-24 09:02:07 -05000547b8c6272c91bced78603040c3866887961c81Change "print" to "sys.exit".editutilities/analyze_sensitivity_matrix.pysrc/CLUBB_core/clubb_api_module.F90src/CLUBB_core/setup_clubb_pdf_params.F90src/clubb_driver.F90ee8146a67fea1e934ec07c363ff4db1c61f1af371616623371000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduPushing grid column loop into setup_pdf_params. Adding iterface too, allowing us to call it with single or multiple columns so that the host models don't need updating to work with this change. This is bit-for-bit, tested with clubb_standalone and cam coarse res run. larson-group/cam#129 2021-03-24 17:02:51 -0500ee8146a67fea1e934ec07c363ff4db1c61f1af37Pushing grid column loop into setup_pdf_params. Adding iterface too, allowing us to call it with single or multiple columns so that the host models don't need updating to work with this change. This is bit-for-bit, tested with clubb_standalone and cam coarse res run. larson-group/cam#129editsrc/CLUBB_core/setup_clubb_pdf_params.F90editsrc/CLUBB_core/clubb_api_module.F90editsrc/clubb_driver.F90src/CLUBB_core/setup_clubb_pdf_params.F900158f1fdcd84fa344e7ae47d322376a35ab6d23a1616632453000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduBroke up column loop inside setup_pdf_params. This is all bit-for-bit. larson-group/cam#129 2021-03-24 19:34:13 -05000158f1fdcd84fa344e7ae47d322376a35ab6d23aBroke up column loop inside setup_pdf_params. This is all bit-for-bit. larson-group/cam#129editsrc/CLUBB_core/setup_clubb_pdf_params.F90src/CLUBB_core/setup_clubb_pdf_params.F90f3880447cdc29ebab35455c2141880dc6528061b1616632485000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixed typo bug. larson-group/cam#129 2021-03-24 19:34:45 -0500f3880447cdc29ebab35455c2141880dc6528061bFixed typo bug. larson-group/cam#129editsrc/CLUBB_core/setup_clubb_pdf_params.F90githttp://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse47http://carson.math.uwm.edu/jenkins/view/all/job/clubb_release_diff_test/47/45http://carson.math.uwm.edu/jenkins/view/all/job/clubb_release_diff_test/45/Started by an SCM change4403427bbbf426e064402b6e7854d6ecdafb2f1f0503427bbbf426e064402b6e7854d6ecdafb2f1f05refs/remotes/origin/master03427bbbf426e064402b6e7854d6ecdafb2f1f0503427bbbf426e064402b6e7854d6ecdafb2f1f05refs/remotes/origin/master03427bbbf426e064402b6e7854d6ecdafb2f1f0503427bbbf426e064402b6e7854d6ecdafb2f1f05refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#4437413241419302clubb_release_diff_test #4444false442835SUCCESS1616488569624http://carson.math.uwm.edu/jenkins/view/all/job/clubb_release_diff_test/44/input/case_setups/cgils_s6_sfc.insrc/Benchmark_cases/atex.F90input/case_setups/cgils_s11_p2k_surface.ininput/case_setups/cloud_feedback_s11_p2k_sfc.insrc/CLUBB_core/sfc_varnce_module.F90input/case_setups/cloud_feedback_s6_sfc.ininput/case_setups/jun25_altocu_surface.inpostprocessing/python_sam_budgets_plotter/sfc3d_rhoboid.pysrc/time_dependent_input.F90src/Benchmark_cases/sfc_flux.F90input/case_setups/atex_surface.ininput/case_setups/dycoms2_rf01_surface.ininput/case_setups/mpace_b_surface.ininput/case_setups/cloud_feedback_s12_p2k_surface.ininput/case_setups/fire_sfc.ininput/case_setups/cobra_surface.ininput/case_setups/bomex_sfc.insrc/Benchmark_cases/gabls3.F90input/case_setups/gabls3_surface.ininput/case_setups/cobra_sfc.inutilities/case_setup/convert_sam_input_to_clubb_input/lsf_to_forcings.pysrc/Benchmark_cases/cloud_feedback.F90input/case_setups/cgils_s12_surface.insrc/COAMPS_microphys/eqa21.prolpostprocessing/output_scripts/gabls3/test_sfc.mutilities/case_setup/convert_sam_input_to_clubb_input/sfc_to_sfc.pypostprocessing/output_scripts/gabls3/test_surface.msrc/Benchmark_cases/arm.F90input/case_setups/cgils_s11_p2k_sfc.ininput/case_setups/cloud_feedback_s6_surface.insrc/Benchmark_cases/dycoms2_rf02.F90input/case_setups/cgils_s12_p2k_sfc.ininput/case_setups/jun25_altocu_sfc.ininput/case_setups/dycoms2_rf02_sfc.insrc/Benchmark_cases/twp_ice.F90input/case_setups/rico_sfc.indoc/WRF_HOC/module_bl_newhoc.Finput/case_setups/cloud_feedback_s12_p2k_sfc.ininput/case_setups/cgils_s12_sfc.insrc/Benchmark_cases/mpace_b.F90input/case_setups/mc3e_sfc.insrc/hydrostatic_module.F90input/case_setups/atex_sfc.ininput/case_setups/astex_a209_surface.inpostprocessing/python_sam_budgets_plotter/surface3d_rhoboid.pyinput/case_setups/arm_surface.ininput/case_setups/dycoms2_rf02_surface.ininput/case_setups/cgils_s6_p2k_surface.ininput/case_setups/arm_97_sfc.ininput/case_setups/cloud_feedback_s12_surface.ininput/case_setups/nov11_altocu_sfc.insrc/CLUBB_core/numerical_check.F90compile/file_list/clubb_model_filesinput/case_setups/wangara_surface.ininput/case_setups/gabls3_sfc.insrc/CLUBB_core/advance_clubb_core_module.F90input/case_setups/cloud_feedback_s11_surface.insrc/clubb_driver.F90src/CLUBB_core/surface_varnce_module.F90input/case_setups/arm_97_surface.ininput/case_setups/clex9_nov02_sfc.insrc/Benchmark_cases/lba.F90input/case_setups/mpace_a_sfc.ininput/case_setups/arm_0003_sfc.ininput/case_setups/mc3e_surface.ininput/case_setups/cgils_s6_surface.insrc/Benchmark_cases/arm_0003.F90src/Benchmark_cases/arm_3year.F90src/CLUBB_core/grid_class.F90input/case_setups/cloud_feedback_s11_sfc.insrc/Benchmark_cases/surface_flux.F90utilities/case_setup/twp_ice/convert_arm_input_data.msrc/Benchmark_cases/astex_a209.F90input/case_setups/cloud_feedback_s6_p2k_sfc.ininput/case_setups/cloud_feedback_s12_sfc.inrun_scripts/ensemble_run/ensemble_run.bashinput/case_setups/gabls3_night_sfc.inutilities/case_setup/file_reader_to_time_dependent_converter.plinput/case_setups/arm_3year_surface.ininput/case_setups/clex9_oct14_sfc.ininput/case_setups/cloud_feedback_s11_p2k_surface.insrc/Benchmark_cases/gabls2.F90input/case_setups/clex9_oct14_surface.insrc/Benchmark_cases/fire.F90input/case_setups/arm_3year_sfc.ininput/case_setups/rico_surface.insrc/Benchmark_cases/cobra.F90input/case_setups/astex_a209_sfc.ininput/case_setups/mpace_b_sfc.ininput/case_setups/cgils_s11_surface.ininput/case_setups/twp_ice_surface.insrc/Benchmark_cases/gabls3_night.F90input/case_setups/dycoms2_rf01_sfc.ininput/case_setups/cloud_feedback_s6_p2k_surface.ininput/case_setups/wangara_sfc.ininput/case_setups/twp_ice_sfc.ininput/case_setups/lba_surface.ininput/case_setups/cgils_s6_p2k_sfc.insrc/Benchmark_cases/arm_97.F90input/case_setups/cgils_s11_sfc.insrc/Benchmark_cases/dycoms2_rf01.F90input/case_setups/arm_0003_surface.ininput/case_setups/lba_sfc.ininput/case_setups/gabls3_night_surface.ininput/case_setups/nov11_altocu_surface.insrc/Benchmark_cases/rico.F90input/case_setups/mpace_a_surface.inutilities/case_setup/convert_sam_input_to_clubb_input/sfc_to_surface.pyrun_scripts/ensemble_run/ensemble_setup.bashsrc/CLUBB_core/stats_sfc_module.F90input/case_setups/bomex_surface.ininput/case_setups/clex9_nov02_surface.ininput/case_setups/cgils_s12_p2k_surface.ininput/case_setups/arm_sfc.ininput/case_setups/fire_surface.in840022e4454f0ce2792decf01dc40bcc1138eead1616100132000http://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskrhodesk@msoe.eduChanged surface to sfc in all instances where requested 2021-03-18 15:42:12 -0500840022e4454f0ce2792decf01dc40bcc1138eeadChanged surface to sfc in all instances where requestedaddinput/case_setups/mc3e_sfc.inaddutilities/case_setup/convert_sam_input_to_clubb_input/sfc_to_sfc.pyaddinput/case_setups/cgils_s12_sfc.inaddinput/case_setups/rico_sfc.inaddinput/case_setups/cgils_s12_p2k_sfc.indeleteinput/case_setups/cgils_s12_surface.indeleteinput/case_setups/cloud_feedback_s6_surface.inaddinput/case_setups/cgils_s6_p2k_sfc.inaddinput/case_setups/arm_0003_sfc.inaddinput/case_setups/cloud_feedback_s11_p2k_sfc.indeleteinput/case_setups/arm_0003_surface.indeleteinput/case_setups/cgils_s11_surface.indeleteinput/case_setups/dycoms2_rf02_surface.ineditcompile/file_list/clubb_model_filesaddinput/case_setups/cloud_feedback_s12_sfc.indeleteinput/case_setups/gabls3_night_surface.indeleteutilities/case_setup/convert_sam_input_to_clubb_input/sfc_to_surface.pyaddinput/case_setups/cgils_s11_p2k_sfc.ineditsrc/hydrostatic_module.F90addinput/case_setups/dycoms2_rf02_sfc.ineditsrc/Benchmark_cases/gabls3.F90editutilities/case_setup/twp_ice/convert_arm_input_data.mdeleteinput/case_setups/clex9_nov02_surface.indeleteinput/case_setups/nov11_altocu_surface.inaddinput/case_setups/cloud_feedback_s6_sfc.ineditsrc/clubb_driver.F90deleteinput/case_setups/twp_ice_surface.ineditsrc/Benchmark_cases/cloud_feedback.F90deleteinput/case_setups/mpace_a_surface.inaddinput/case_setups/atex_sfc.inaddinput/case_setups/fire_sfc.indeleteinput/case_setups/astex_a209_surface.indeleteinput/case_setups/jun25_altocu_surface.inaddsrc/Benchmark_cases/sfc_flux.F90deleteinput/case_setups/lba_surface.inaddsrc/CLUBB_core/sfc_varnce_module.F90addinput/case_setups/mpace_a_sfc.inaddinput/case_setups/lba_sfc.ineditsrc/Benchmark_cases/arm_3year.F90addinput/case_setups/nov11_altocu_sfc.ineditsrc/Benchmark_cases/lba.F90editsrc/Benchmark_cases/arm_97.F90addpostprocessing/python_sam_budgets_plotter/sfc3d_rhoboid.pyeditsrc/Benchmark_cases/atex.F90addinput/case_setups/cloud_feedback_s11_sfc.inaddinput/case_setups/gabls3_sfc.indeleteinput/case_setups/bomex_surface.indeleteinput/case_setups/gabls3_surface.indeleteinput/case_setups/cloud_feedback_s11_p2k_surface.ineditsrc/CLUBB_core/stats_sfc_module.F90deleteinput/case_setups/mc3e_surface.indeleteinput/case_setups/cgils_s12_p2k_surface.indeleteinput/case_setups/clex9_oct14_surface.inaddinput/case_setups/dycoms2_rf01_sfc.inaddpostprocessing/output_scripts/gabls3/test_sfc.meditsrc/Benchmark_cases/gabls2.F90deleteinput/case_setups/wangara_surface.ineditsrc/Benchmark_cases/fire.F90deleteinput/case_setups/cgils_s6_surface.indeleteinput/case_setups/cobra_surface.ineditsrc/Benchmark_cases/twp_ice.F90addinput/case_setups/arm_sfc.ineditrun_scripts/ensemble_run/ensemble_setup.basheditsrc/Benchmark_cases/gabls3_night.F90editsrc/CLUBB_core/advance_clubb_core_module.F90deleteinput/case_setups/mpace_b_surface.indeleteinput/case_setups/fire_surface.indeleteinput/case_setups/arm_97_surface.ineditsrc/COAMPS_microphys/eqa21.proldeleteinput/case_setups/cgils_s6_p2k_surface.indeleteinput/case_setups/cloud_feedback_s6_p2k_surface.indeletesrc/Benchmark_cases/surface_flux.F90deletesrc/CLUBB_core/surface_varnce_module.F90editsrc/CLUBB_core/grid_class.F90deleteinput/case_setups/atex_surface.ineditdoc/WRF_HOC/module_bl_newhoc.Feditsrc/Benchmark_cases/dycoms2_rf01.F90editsrc/time_dependent_input.F90deleteinput/case_setups/cloud_feedback_s12_p2k_surface.ineditutilities/case_setup/convert_sam_input_to_clubb_input/lsf_to_forcings.pydeleteinput/case_setups/rico_surface.inaddinput/case_setups/arm_97_sfc.inaddinput/case_setups/cobra_sfc.inaddinput/case_setups/jun25_altocu_sfc.ineditsrc/Benchmark_cases/cobra.F90deleteinput/case_setups/cloud_feedback_s11_surface.inaddinput/case_setups/cloud_feedback_s12_p2k_sfc.ineditsrc/Benchmark_cases/arm.F90editsrc/Benchmark_cases/mpace_b.F90editsrc/Benchmark_cases/dycoms2_rf02.F90editsrc/Benchmark_cases/arm_0003.F90deleteinput/case_setups/arm_3year_surface.indeletepostprocessing/output_scripts/gabls3/test_surface.meditsrc/Benchmark_cases/rico.F90deletepostprocessing/python_sam_budgets_plotter/surface3d_rhoboid.pyaddinput/case_setups/cgils_s6_sfc.inaddinput/case_setups/clex9_nov02_sfc.inaddinput/case_setups/bomex_sfc.inaddinput/case_setups/mpace_b_sfc.inaddinput/case_setups/astex_a209_sfc.indeleteinput/case_setups/cloud_feedback_s12_surface.inaddinput/case_setups/cloud_feedback_s6_p2k_sfc.ineditutilities/case_setup/file_reader_to_time_dependent_converter.pldeleteinput/case_setups/dycoms2_rf01_surface.ineditsrc/Benchmark_cases/astex_a209.F90addinput/case_setups/wangara_sfc.ineditrun_scripts/ensemble_run/ensemble_run.bashaddinput/case_setups/gabls3_night_sfc.inaddinput/case_setups/clex9_oct14_sfc.inaddinput/case_setups/twp_ice_sfc.indeleteinput/case_setups/cgils_s11_p2k_surface.ineditsrc/CLUBB_core/numerical_check.F90addinput/case_setups/cgils_s11_sfc.indeleteinput/case_setups/arm_surface.inaddinput/case_setups/arm_3year_sfc.insrc/hydrostatic_module.F90900bc9a8c6779c6909c7fd968b2bee2884d815011616102529000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comReverted surface to sfc change where applicable 2021-03-18 16:22:09 -0500900bc9a8c6779c6909c7fd968b2bee2884d81501Reverted surface to sfc change where applicableeditsrc/hydrostatic_module.F90src/CLUBB_core/stats_sfc_module.F90c32a0249c87217266b8d234ff0456535ebdd839c1616102621000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUndid sfc change in stats_sfc_module.F90 2021-03-18 16:23:41 -0500c32a0249c87217266b8d234ff0456535ebdd839cUndid sfc change in stats_sfc_module.F90editsrc/CLUBB_core/stats_sfc_module.F90src/CLUBB_core/grid_class.F9027036f98f6ec05466569ea2831295b76354ec4f21616102639000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUndid sfc change to grid_class.F90 2021-03-18 16:23:59 -050027036f98f6ec05466569ea2831295b76354ec4f2Undid sfc change to grid_class.F90editsrc/CLUBB_core/grid_class.F90src/CLUBB_core/numerical_check.F9028728186a59fa9b95775f01e09bcb425b8bd44421616102659000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUndid sfc change in numerical_check.F90 2021-03-18 16:24:19 -050028728186a59fa9b95775f01e09bcb425b8bd4442Undid sfc change in numerical_check.F90editsrc/CLUBB_core/numerical_check.F90utilities/test_analyzeSensMatrix.py52bc77f54ee67864baac86c7ad9e05c3e1c039381616280567000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comThis is a unit test for function analyzeSensMatrix in analyze_sensitivity_matrix.py. It creates netcdf files with fake, hardwired data in order to form a normalized sensitivity matrix like: 1 0 0 1 1 1 and then checks whether analyzeSensMatrix returns the expected answer, [ 2/3 2/3 ]. 2021-03-20 17:49:27 -050052bc77f54ee67864baac86c7ad9e05c3e1c03938This is a unit test for function analyzeSensMatrixaddutilities/test_analyzeSensMatrix.pyutilities/analyze_sensitivity_matrix.pyutilities/test_analyzeSensMatrix.py8117904e462f396168da5959c328b758af7248891616453311000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduNormalize and transform parameters. The normalization involves multiplying each column of the sensitivity matrix by the appropriate parameter, so that the parameter units cancel out. Transforming involves converting parameters that lie in the range [0,1] to the range [0,infinity] in order to make the sensitivity more linear. For #910. 2021-03-22 17:48:31 -05008117904e462f396168da5959c328b758af724889Normalize and transform parameters.editutilities/test_analyzeSensMatrix.pyeditutilities/analyze_sensitivity_matrix.pyutilities/analyze_sensitivity_matrix.py9c664a4769f494c1da2839d8c7028741febe51a91616459144000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comAdd function that plots sensitivity matrix elements 2021-03-22 19:25:44 -05009c664a4769f494c1da2839d8c7028741febe51a9Add function that plots sensitivity matrix elementseditutilities/analyze_sensitivity_matrix.pyutilities/test_analyzeSensMatrix.py059aad628d8d4d6af965f1ec723cce6cb1e8fd521616459303000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comCall function to plot sensitivity matrix 2021-03-22 19:28:23 -0500059aad628d8d4d6af965f1ec723cce6cb1e8fd52Call function to plot sensitivity matrixeditutilities/test_analyzeSensMatrix.pyutilities/analyze_sensitivity_matrix.py03427bbbf426e064402b6e7854d6ecdafb2f1f051616463414000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comPrint params and metrics names rather than numbers 2021-03-22 20:36:54 -050003427bbbf426e064402b6e7854d6ecdafb2f1f05Print params and metrics names rather than numberseditutilities/analyze_sensitivity_matrix.pygithttp://carson.math.uwm.edu/jenkins/user/rhodeskrhodeskhttp://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse45http://carson.math.uwm.edu/jenkins/view/all/job/clubb_release_diff_test/45/43http://carson.math.uwm.edu/jenkins/view/all/job/clubb_release_diff_test/43/