http://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_python_test/clubb_python_testclubb_python_testclubb_python_testclubb_python_testhttp://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/trueStarted by an SCM change234f132e2cf1bea29284b46b82a0b5006a2b23249a4f132e2cf1bea29284b46b82a0b5006a2b23249arefs/remotes/origin/master4f132e2cf1bea29284b46b82a0b5006a2b23249a4f132e2cf1bea29284b46b82a0b5006a2b23249arefs/remotes/origin/master4f132e2cf1bea29284b46b82a0b5006a2b23249a4f132e2cf1bea29284b46b82a0b5006a2b23249arefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#23259856233409clubb_python_test #2323false234195SUCCESS1780473849723http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/23/clubb_jax/JAX_CONVERSION_PLAN.md4f132e2cf1bea29284b46b82a0b5006a2b23249a1780435588000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate JAX conversion plan for clarity and detail Clarified the role of clubb_python_api in the conversion process and improved the description of the test harness functionality. 2026-06-02 16:26:28 -05004f132e2cf1bea29284b46b82a0b5006a2b23249aUpdate JAX conversion plan for clarity and detaileditclubb_jax/JAX_CONVERSION_PLAN.mdgithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse22http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/22/Started by an SCM change22fb12cc1c0be895d2db030ceed981bc5121277b0efb12cc1c0be895d2db030ceed981bc5121277b0erefs/remotes/origin/masterfb12cc1c0be895d2db030ceed981bc5121277b0efb12cc1c0be895d2db030ceed981bc5121277b0erefs/remotes/origin/masterfb12cc1c0be895d2db030ceed981bc5121277b0efb12cc1c0be895d2db030ceed981bc5121277b0erefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#22219775233409clubb_python_test #2222false224110SUCCESS1780041849748http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/22/READMEfb12cc1c0be895d2db030ceed981bc5121277b0e1779992322000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThe last commit should've been marked as non-BFB since it corrected a crashing bug - so comparing output to no output caused the output to be considered different. This was missed because the BFB checking tests didn't fail, and that was because the commit that caused the crashing was marked non-BFB, so an unusual combo. In general though any commit that fixes crashing behavior should be labelled as bit changing. RESOLVED:73dc365c77ab4bf2405d753f167307ae9be330a0 2026-05-28 13:18:42 -0500fb12cc1c0be895d2db030ceed981bc5121277b0eThe last commit should've been marked as non-BFB since it corrected a crashing bug - so comparing output to no output caused the output to be considered different. This was missed because the BFB checking tests didn't fail, and that was because the commit that caused the crashing was marked non-BFB, so an unusual combo. In general though any commit that fixes crashing behavior should be labelled as bit changing. RESOLVED:73dc365c77ab4bf2405d753f167307ae9be330a0editREADMEgithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse23http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/23/21http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/21/Started by user Gunther HueblerhueblerGunther Huebler2173dc365c77ab4bf2405d753f167307ae9be330a073dc365c77ab4bf2405d753f167307ae9be330a0refs/remotes/origin/master73dc365c77ab4bf2405d753f167307ae9be330a073dc365c77ab4bf2405d753f167307ae9be330a0refs/remotes/origin/master73dc365c77ab4bf2405d753f167307ae9be330a073dc365c77ab4bf2405d753f167307ae9be330a0refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#21220596233409clubb_python_test #2121false213974SUCCESS1779907771100http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/21/src/CLUBB_core/advance_clubb_core_module.F9073dc365c77ab4bf2405d753f167307ae9be330a01779907751000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving unneccesary wp2_zt conversion that should've been removed already, but was accidentally added back in the last PR when trying to split BFB from non-BFB changes. This was an unused local variable so this does not affect anything. 2026-05-27 13:49:11 -050073dc365c77ab4bf2405d753f167307ae9be330a0Removing unneccesary wp2_zt conversion that should've been removed already, but was accidentally added back in the last PR when trying to split BFB from non-BFB changes. This was an unused local variable so this does not affect anything.editsrc/CLUBB_core/advance_clubb_core_module.F90githttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse22http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/22/20http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/20/Started by an SCM change207b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbrefs/remotes/origin/master7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbrefs/remotes/origin/master7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbrefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#2072929233409clubb_python_test #2020false203886FAILURE1779869048901http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/20/clubb_python_api/f2py_fortran_wrappers/advance_helper_module_wrapper.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/advance_xp3_module.F90clubb_jax/advance_clubb_core.pyclubb_python_api/clubb_python/clubb_api.pyclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90clubb_python_driver/advance_clubb_core.pyclubb_python_api/clubb_python/CLUBB_core/advance_helper.pysrc/CLUBB_core/stats_clubb_utilities.F90clubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pysrc/CLUBB_core/advance_helper_module.F90clubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pysrc/G_unit_test_types/spurious_source_test.F90clubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90clubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90clubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90clubb_python_api/tests/test_call_tree_advance_xp3.pyclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pysrc/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90clubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyclubb_python_api/tests/test_call_tree_stats_accumulate.pyclubb_python_api/clubb_f2py.pyfclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.py7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb1779832578000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb organization part2 (#1304) A number of fields were being calculated in `advance_clubb_core` (`wp2_zt` `wp3_on_wp2` `wp3_on_wp2_zt` `Skw_zm` `Skw_zt) then passed into other routines, however, all these fields depend on `wp2` and were not being updated after `wp2` was being updated by `calc_sfc_varnce`. This commit fixes that by moving where these fields are calculated - instead of computing in `advance_clubb_core` with the incoming `wp2`, we now calculate them "on-demand" where they are needed using the most recent value of `wp2`. Using our default flag set, there are no numerical differences caused by this change set, only a few stats differences. There are real differences that occur when `l_upwind_xpyp_ta = .false.` (a clubb_config_flag value) or when `l_explicit_turbulent_adv_xpyp = .true.` (a parameter in model_flags.F90), but these are small differences and do not visually affect plots for our stable cases. Changing the order of the `advance_` routines would also cause this to be BIT_CHANGING, since that also affects the update path for `wp2` - now these values that got moved would be using the newest `wp2` instead of being "stale", also causing small (but real) differences. * Calculating wp2_zt and wp3_on_wp2 where needed, rather than passing those values around through advance_clubb_core. This is BIT_CHANGING for a handful of stats only variables be default: wp3_on_wp2, wp3_on_wp2_zt, wp3_on_wp2_cfl_num, term_wprtp2_explicit, term_wprtpthlp_explicit, and term_wpthlp2_explicit. Some Skw_ variables when using lmm_stepping, and has actual differences (not just in stats output) when swapping the order of the advance routines * Moving things around, this seems to all be BFB except for the Skw_ movements, which is BIT_CHANGING if the advance_ order changes * Fixing python API * Reverting some BFB changes 2026-05-26 16:56:18 -05007b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbClubb organization part2 (#1304)editclubb_python_api/clubb_python/CLUBB_core/advance_helper.pyeditclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyeditclubb_jax/advance_clubb_core.pyeditclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyeditclubb_python_api/clubb_python/clubb_api.pyeditclubb_python_api/clubb_f2py.pyfeditsrc/CLUBB_core/advance_helper_module.F90editclubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90editclubb_python_driver/advance_clubb_core.pyeditsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyeditclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyeditsrc/G_unit_test_types/spurious_source_test.F90editclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90editclubb_python_api/f2py_fortran_wrappers/advance_helper_module_wrapper.F90editclubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90editclubb_python_api/tests/test_call_tree_stats_accumulate.pyeditsrc/CLUBB_core/advance_xm_wpxp_module.F90editclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyeditclubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90editclubb_python_api/tests/test_call_tree_advance_xp3.pyeditsrc/CLUBB_core/advance_wp2_wp3_module.F90editclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyeditsrc/CLUBB_core/advance_xp3_module.F90githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse21http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/21/19http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/19/Started by an SCM change19f6869b072b6d6628b04508169a17c757c2ebddc5f6869b072b6d6628b04508169a17c757c2ebddc5refs/remotes/origin/masterf6869b072b6d6628b04508169a17c757c2ebddc5f6869b072b6d6628b04508169a17c757c2ebddc5refs/remotes/origin/masterf6869b072b6d6628b04508169a17c757c2ebddc5f6869b072b6d6628b04508169a17c757c2ebddc5refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#19235824233409clubb_python_test #1919false193814SUCCESS1779523445838http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/19/cmake/toolchains/darwin_arm64_gcc.cmakeBUILD.mdcmake/toolchains/darwin_x86_64_gfortran.cmakecmake/toolchains/darwin_arm64_gfortran.cmakecompile.pycmake/deps/NetcdfFortranDependency.cmakef6869b072b6d6628b04508169a17c757c2ebddc51779480188000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comImprovements to get clubb working on mac (#1305) 2026-05-22 15:03:08 -0500f6869b072b6d6628b04508169a17c757c2ebddc5Improvements to get clubb working on mac (#1305)addcmake/toolchains/darwin_arm64_gcc.cmakedeletecmake/toolchains/darwin_arm64_gfortran.cmakeeditcompile.pydeletecmake/toolchains/darwin_x86_64_gfortran.cmakeeditBUILD.mdeditcmake/deps/NetcdfFortranDependency.cmakegithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse20http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/20/18http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/18/Started by an SCM change188244162bdb14e97ce64bf9b5961dc91e6ba442b48244162bdb14e97ce64bf9b5961dc91e6ba442b4refs/remotes/origin/master8244162bdb14e97ce64bf9b5961dc91e6ba442b48244162bdb14e97ce64bf9b5961dc91e6ba442b4refs/remotes/origin/master8244162bdb14e97ce64bf9b5961dc91e6ba442b48244162bdb14e97ce64bf9b5961dc91e6ba442b4refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#18240858233409clubb_python_test #1818false183724SUCCESS1779264246469http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/18/src/CLUBB_core/pdf_closure_module.F908244162bdb14e97ce64bf9b5961dc91e6ba442b41779217968000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduRemoving a couple variables from openacc statements to fix the clubb_driver_test - these were causing stats errors on the GPU for chi and chip2. This is technically BIT_CHANGING. 2026-05-19 14:12:48 -05008244162bdb14e97ce64bf9b5961dc91e6ba442b4Removing a couple variables from openacc statements to fix the clubb_driver_test - these were causing stats errors on the GPU for chi and chip2. This is technically BIT_CHANGING.editsrc/CLUBB_core/pdf_closure_module.F90githttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse19http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/19/17http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/17/Started by an SCM change17a1acd2bad4630dc5f48adc31966bc720b915d0e5a1acd2bad4630dc5f48adc31966bc720b915d0e5refs/remotes/origin/mastera1acd2bad4630dc5f48adc31966bc720b915d0e5a1acd2bad4630dc5f48adc31966bc720b915d0e5refs/remotes/origin/mastera1acd2bad4630dc5f48adc31966bc720b915d0e5a1acd2bad4630dc5f48adc31966bc720b915d0e5refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#17235992233409clubb_python_test #1717false173628SUCCESS1779177849938http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/17/clubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90clubb_jax/advance_clubb_core.pysrc/CLUBB_core/pdf_closure_module.F90clubb_jax/advance_clubb_to_end.pyrun_scripts/run_bindiff_w_flags_config_core_flags.jsonclubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyLLM_prompts/update_python_api_and_drivers.mdsrc/CLUBB_core/mixing_length.F90src/CLUBB_core/advance_clubb_core_module.F90clubb_python_api/tests/test_call_tree_stats_accumulate.pyclubb_python_driver/advance_clubb_core.pysrc/CLUBB_core/stats_clubb_utilities.F90clubb_python_api/clubb_f2py.pyfa1acd2bad4630dc5f48adc31966bc720b915d0e51779161553000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb organization part1 (#1302) * More organization. Also moving some stats calls inside of pdf_closure_driver, which is BIT_CHANGING, but only for stats output and only when ipdf_call_placement=ipdf_pre_post_advance_fields * Adding new flag set for testing * Fixing python API and updating prompt 2026-05-18 22:32:33 -0500a1acd2bad4630dc5f48adc31966bc720b915d0e5Clubb organization part1 (#1302)editLLM_prompts/update_python_api_and_drivers.mdeditclubb_python_api/clubb_f2py.pyfeditclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyeditsrc/CLUBB_core/advance_clubb_core_module.F90editclubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90editrun_scripts/run_bindiff_w_flags_config_core_flags.jsoneditsrc/CLUBB_core/mixing_length.F90editsrc/CLUBB_core/pdf_closure_module.F90editclubb_python_driver/advance_clubb_core.pyeditclubb_python_api/f2py_fortran_wrappers/pdf_closure_module_wrapper.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editclubb_jax/advance_clubb_core.pyeditclubb_jax/advance_clubb_to_end.pyeditclubb_python_api/tests/test_call_tree_stats_accumulate.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse18http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/18/16http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/16/Started by an SCM change1677d989d6d7397187825e263ed404e956c759874977d989d6d7397187825e263ed404e956c7598749refs/remotes/origin/master77d989d6d7397187825e263ed404e956c759874977d989d6d7397187825e263ed404e956c7598749refs/remotes/origin/master77d989d6d7397187825e263ed404e956c759874977d989d6d7397187825e263ed404e956c7598749refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#16180580233409clubb_python_test #1616false163528SUCCESS1778832246766http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/16/src/CLUBB_core/advance_windm_edsclrm_module.F9077d989d6d7397187825e263ed404e956c75987491778783426000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduThis fixes the GPU BFB test that failed due to stats-only differences in rtm_ed and thlm_ed, and as a result is technically BIT_CHANGING. Also, the BFB with varying flags failed because flag set 1 changed to use the lapack solvers since the custom ones it set before are now default. RESOLVED:34c6bb07afb6e445f60ea87dcc632969086f9fa1 2026-05-14 13:30:26 -050077d989d6d7397187825e263ed404e956c7598749This fixes the GPU BFB test that failed due to stats-only differences in rtm_ed and thlm_ed, and as a result is technically BIT_CHANGING. Also, the BFB with varying flags failed because flag set 1 changed to use the lapack solvers since the custom ones it set before are now default. RESOLVED:34c6bb07afb6e445f60ea87dcc632969086f9fa1editsrc/CLUBB_core/advance_windm_edsclrm_module.F90githttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse17http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/17/15http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/15/Started by an SCM change1534c6bb07afb6e445f60ea87dcc632969086f9fa134c6bb07afb6e445f60ea87dcc632969086f9fa1refs/remotes/origin/master34c6bb07afb6e445f60ea87dcc632969086f9fa134c6bb07afb6e445f60ea87dcc632969086f9fa1refs/remotes/origin/master34c6bb07afb6e445f60ea87dcc632969086f9fa134c6bb07afb6e445f60ea87dcc632969086f9fa1refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#15195602233409clubb_python_test #1515false153408SUCCESS1778745847289http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/15/run_scripts/run_clubb_w_varying_flags.pyclubb_python_api/f2py_fortran_wrappers/advance_helper_module_wrapper.F90clubb_python_api/clubb_python/CLUBB_core/sigma_sqd_w_module.pysrc/Radiation/bugsrad_driver.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/advance_xp3_module.F90src/CLUBB_core/pdf_closure_module.F90clubb_python_api/clubb_python/clubb_api.pyclubb_jax/advance_clubb_to_end.pyclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pysrc/CLUBB_core/mixing_length.F90src/CLUBB_core/advance_windm_edsclrm_module.F90clubb_python_driver/advance_clubb_core.pyclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pysrc/G_unit_test_types/pdf_parameter_tests.F90clubb_python_api/f2py_fortran_wrappers/advance_windm_edsclrm_module_wrapper.F90clubb_python_api/f2py_fortran_wrappers/sigma_sqd_w_module_wrapper.F90clubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pyLLM_prompts/fortran_routine_formatting.mdclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyclubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90src/CLUBB_core/clip_explicit.F90src/Microphys/morrison_microphys_module.F90clubb_python_api/tests/test_advance_core_subs.pyclubb_python_api/tests/test_call_tree_numerical_check.pyclubb_python_api/tests/test_call_tree_stats_accumulate.pyAGENTS.mdclubb_python_api/clubb_f2py.pyfsrc/CLUBB_core/grid_adaptation_module.F90clubb_jax/advance_clubb_core.pyrun_scripts/run_bindiff_w_flags_config_core_flags.jsonclubb_python_api/clubb_python/CLUBB_core/clip_explicit.pyclubb_python_api/tests/test_call_tree_splat.pyclubb_python_api/f2py_fortran_wrappers/advance_xp3_module_wrapper.F90clubb_python_api/f2py_fortran_wrappers/skx_module_wrapper.F90src/CLUBB_core/Skx_module.F90clubb_python_api/clubb_python/CLUBB_core/numerical_check.pyclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90jenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfilerun_scripts/run_bindiff_w_flags.pyclubb_python_api/clubb_python/CLUBB_core/advance_helper.pysrc/CLUBB_core/stats_clubb_utilities.F90src/CLUBB_core/advance_helper_module.F90src/CLUBB_core/sigma_sqd_w_module.F90clubb_python_api/tests/test_call_tree_skx.pyLLM_prompts/SHORTCUTS.mdclubb_python_api/f2py_fortran_wrappers/clip_explicit_wrapper.F90LLM_prompts/update_python_api_and_drivers.mdsrc/CLUBB_core/numerical_check.F90clubb_python_api/tests/test_call_tree_advance_xp3.pyclubb_python_driver/advance_clubb_to_end.pyrun_scripts/run_bindiff_varying_flags_output.pysrc/CLUBB_core/advance_clubb_core_module.F90clubb_python_api/tests/test_python_port_api_coverage.pyclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyclubb_python_api/f2py_fortran_wrappers/numerical_check_wrapper.F90clubb_python_api/tests/test_call_tree_meta.pysrc/error.F90clubb_python_api/clubb_python/CLUBB_core/skx_module.py34c6bb07afb6e445f60ea87dcc632969086f9fa11778702440000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comadvance_clubb_core cleanup (#1301) * BFB cleanup stuff * Adding some helper routines * More BFB changes * More BFB changes * More BFB changes * More BFB changes * Fixing python API and adding an agent file and a prompt to fix python API in the future. * Updating scripts and improving formatting * Updating some scripts and adding new jenkins test to compare the current branch vs master with flags * Restoring BFBness when using l_lmm_stepping=.true. by reimplementing an existing bug... * Making run_clubb_w_varying_flags.py not remove output, it's just unneccesary * Simplifying script changes * Jenkins script update * Little consolidation of code in pdf_closure_driver * Fixing python API * Fixing parameterization_check formatting 2026-05-13 15:00:40 -050034c6bb07afb6e445f60ea87dcc632969086f9fa1advance_clubb_core cleanup (#1301)editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editsrc/CLUBB_core/advance_helper_module.F90editclubb_python_api/f2py_fortran_wrappers/clip_explicit_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/sigma_sqd_w_module.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyeditclubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90editclubb_python_api/tests/test_call_tree_meta.pyeditsrc/CLUBB_core/pdf_closure_module.F90editsrc/Radiation/bugsrad_driver.F90editrun_scripts/run_bindiff_w_flags_config_core_flags.jsoneditclubb_python_api/tests/test_call_tree_numerical_check.pyeditclubb_python_api/clubb_python/CLUBB_core/numerical_check.pyeditrun_scripts/run_clubb_w_varying_flags.pyeditsrc/CLUBB_core/grid_adaptation_module.F90editsrc/error.F90editclubb_jax/advance_clubb_core.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pyeditsrc/CLUBB_core/advance_wp2_wp3_module.F90editsrc/Microphys/morrison_microphys_module.F90editclubb_python_api/clubb_python/CLUBB_core/advance_helper.pyaddLLM_prompts/fortran_routine_formatting.mdeditclubb_python_api/clubb_python/CLUBB_core/clip_explicit.pyeditsrc/G_unit_test_types/pdf_parameter_tests.F90editclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyeditclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyeditsrc/CLUBB_core/mixing_length.F90editclubb_python_driver/advance_clubb_to_end.pyaddjenkins_tests/run_bindiff_w_varying_flags_against_master/Jenkinsfileeditsrc/CLUBB_core/clip_explicit.F90editclubb_python_api/f2py_fortran_wrappers/skx_module_wrapper.F90editclubb_python_api/tests/test_call_tree_stats_accumulate.pyeditclubb_python_api/f2py_fortran_wrappers/advance_windm_edsclrm_module_wrapper.F90editrun_scripts/run_bindiff_varying_flags_output.pyaddAGENTS.mdeditclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyeditsrc/CLUBB_core/advance_clubb_core_module.F90editclubb_python_api/f2py_fortran_wrappers/advance_helper_module_wrapper.F90editclubb_python_api/clubb_f2py.pyfeditclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyeditsrc/CLUBB_core/sigma_sqd_w_module.F90editclubb_python_api/clubb_python/clubb_api.pyeditclubb_python_api/tests/test_python_port_api_coverage.pyeditclubb_jax/advance_clubb_to_end.pyeditclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90editclubb_python_api/tests/test_call_tree_advance_xp3.pyeditclubb_python_api/f2py_fortran_wrappers/advance_xp3_module_wrapper.F90editclubb_python_api/tests/test_advance_core_subs.pyaddLLM_prompts/update_python_api_and_drivers.mdeditclubb_python_api/clubb_python/CLUBB_core/skx_module.pyeditsrc/CLUBB_core/numerical_check.F90editrun_scripts/run_bindiff_w_flags.pyeditclubb_python_driver/advance_clubb_core.pyeditsrc/CLUBB_core/stats_clubb_utilities.F90addLLM_prompts/SHORTCUTS.mdeditclubb_python_api/tests/test_call_tree_splat.pyeditclubb_python_api/f2py_fortran_wrappers/numerical_check_wrapper.F90editsrc/CLUBB_core/Skx_module.F90editclubb_python_api/f2py_fortran_wrappers/sigma_sqd_w_module_wrapper.F90editsrc/CLUBB_core/advance_xp3_module.F90editclubb_python_api/tests/test_call_tree_skx.pygithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse16http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/16/14http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/14/Started by an SCM change142fe6e56761356da5b20a7fba14c72ec69fdc9d022fe6e56761356da5b20a7fba14c72ec69fdc9d02refs/remotes/origin/master2fe6e56761356da5b20a7fba14c72ec69fdc9d022fe6e56761356da5b20a7fba14c72ec69fdc9d02refs/remotes/origin/master2fe6e56761356da5b20a7fba14c72ec69fdc9d022fe6e56761356da5b20a7fba14c72ec69fdc9d02refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#14195560233409clubb_python_test #1414false143314SUCCESS1778227448331http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/14/clubb_jax/advance_clubb_to_end.pyclubb_python_driver/advance_clubb_to_end.py2fe6e56761356da5b20a7fba14c72ec69fdc9d021778175927000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduSwitching default call to advance_clubb_core in python and jax drivers to use the python api version, rather than the python ported version. 2026-05-07 12:45:27 -05002fe6e56761356da5b20a7fba14c72ec69fdc9d02Switching default call to advance_clubb_core in python and jax drivers to use the python api version, rather than the python ported version.editclubb_python_driver/advance_clubb_to_end.pyeditclubb_jax/advance_clubb_to_end.pygithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse15http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/15/13http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/13/Started by an SCM change135e3cfdd6efddf098dbddb41a5848e3ef4189aac85e3cfdd6efddf098dbddb41a5848e3ef4189aac8refs/remotes/origin/master5e3cfdd6efddf098dbddb41a5848e3ef4189aac85e3cfdd6efddf098dbddb41a5848e3ef4189aac8refs/remotes/origin/master5e3cfdd6efddf098dbddb41a5848e3ef4189aac85e3cfdd6efddf098dbddb41a5848e3ef4189aac8refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#13225799233409clubb_python_test #1313false133228SUCCESS1778054647384http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/13/false14http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/14/12http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/12/Started by user Gunther HueblerhueblerGunther Huebler12abccbb5bc06909c50b6645028674a3461f0bf0ababccbb5bc06909c50b6645028674a3461f0bf0abrefs/remotes/origin/masterabccbb5bc06909c50b6645028674a3461f0bf0ababccbb5bc06909c50b6645028674a3461f0bf0abrefs/remotes/origin/masterabccbb5bc06909c50b6645028674a3461f0bf0ababccbb5bc06909c50b6645028674a3461f0bf0abrefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#12258716233409clubb_python_test #1212false123208SUCCESS1778019414079http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/12/clubb_python_api/f2py_fortran_wrappers/clip_explicit_wrapper.F90clubb_jax/advance_clubb_core.pyclubb_python_api/clubb_python/CLUBB_core/clip_explicit.pyclubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90clubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90jenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfilejenkins_tests/clubb_driver_test/Jenkinsfileclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pysrc/CLUBB_core/advance_clubb_core_module.F90clubb_python_api/tests/test_advance_core_subs.pysrc/CLUBB_core/advance_windm_edsclrm_module.F90jenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfileclubb_python_driver/advance_clubb_core.pyclubb_python_api/clubb_f2py.pyfclubb_python_api/f2py_fortran_wrappers/advance_windm_edsclrm_module_wrapper.F90clubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pyclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyabccbb5bc06909c50b6645028674a3461f0bf0ab1778019270000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduFixing python api and python/jax driver. Also fixing bug that caused non-BFBness in stats outputs (only upwp_cl/vpwp_cl) when using l_predict_upwp_vpwp=.false., and adding ulimit -s 8388608 to fix GPU test (though it's unclear why exactly we need this all of a sudden for this test). RESOLVED:643d128a5613019595aecd643f1028e937ad4b76 RESOLVED:f146255f50732c445ccbd012ca45888a9ce44d0b 2026-05-05 17:14:30 -0500abccbb5bc06909c50b6645028674a3461f0bf0abFixing python api and python/jax driver. Also fixing bug that caused non-BFBness in stats outputs (only upwp_cl/vpwp_cl) when using l_predict_upwp_vpwp=.false., and adding ulimit -s 8388608 to fix GPU test (though it's unclear why exactly we need this all of a sudden for this test). RESOLVED:643d128a5613019595aecd643f1028e937ad4b76 RESOLVED:f146255f50732c445ccbd012ca45888a9ce44d0beditjenkins_tests/clubb_BFB_multi_col_gpu_nvhpc_test/Jenkinsfileeditclubb_python_api/tests/test_advance_core_subs.pyeditclubb_python_api/clubb_python/CLUBB_core/clip_explicit.pyeditclubb_python_api/tests/test_call_tree_advance_windm_edsclrm.pyeditjenkins_tests/clubb_driver_test/Jenkinsfileeditclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyeditclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyeditclubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90editclubb_python_driver/advance_clubb_core.pyeditclubb_python_api/f2py_fortran_wrappers/clip_explicit_wrapper.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editclubb_python_api/clubb_python/CLUBB_core/advance_windm_edsclrm.pyeditclubb_jax/advance_clubb_core.pyeditsrc/CLUBB_core/advance_windm_edsclrm_module.F90editjenkins_tests/clubb_plot_nvhpc_gpu_vs_cpu/Jenkinsfileeditclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyeditclubb_python_api/clubb_f2py.pyfeditclubb_python_api/f2py_fortran_wrappers/advance_windm_edsclrm_module_wrapper.F90editclubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90editclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pygithttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse13http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/13/11http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/11/Started by an SCM change11f146255f50732c445ccbd012ca45888a9ce44d0bf146255f50732c445ccbd012ca45888a9ce44d0brefs/remotes/origin/masterf146255f50732c445ccbd012ca45888a9ce44d0bf146255f50732c445ccbd012ca45888a9ce44d0brefs/remotes/origin/masterf146255f50732c445ccbd012ca45888a9ce44d0bf146255f50732c445ccbd012ca45888a9ce44d0brefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#1148066233409clubb_python_test #1111false113100FAILURE1777968246371http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/11/src/CLUBB_core/advance_xm_wpxp_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_windm_edsclrm_module.F90src/G_unit_test_types/spurious_source_test.F90src/CLUBB_core/setup_clubb_pdf_params.F90src/CLUBB_core/clip_explicit.F90src/Microphys/pdf_hydromet_microphys_wrapper.F90src/CLUBB_core/advance_xp2_xpyp_module.F90643d128a5613019595aecd643f1028e937ad4b761777923494000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClip covar simplifications (#1297) * Initial clip covar changes * Slightly nicer clipping count behavior 2026-05-04 14:38:14 -0500643d128a5613019595aecd643f1028e937ad4b76Clip covar simplifications (#1297)editsrc/CLUBB_core/advance_windm_edsclrm_module.F90editsrc/CLUBB_core/advance_xm_wpxp_module.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/G_unit_test_types/spurious_source_test.F90editsrc/Microphys/pdf_hydromet_microphys_wrapper.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/setup_clubb_pdf_params.F90editsrc/CLUBB_core/clip_explicit.F90src/clubb_driver.F90READMEcmake/deps/NetcdfFortranDependency.cmakerun_scripts/READMEsrc/CMakeLists.txtpostprocessing/plotgen/cases/READMEcompile.pyrun_scripts/run_scm.pyf146255f50732c445ccbd012ca45888a9ce44d0b1777938051000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comCmake netcdf fallback (#1294) * WIP: Compile w/o NetCDF - Currently failing from a 'version' error, but actually it's because the fortran cmake is testing a small c program to test functionality, but the C hasn't been built yet * CMake configuration phase works for netcdf, but build fails * Compiles almost all the way and has the executable clubb_standalone * No errors to compile w/o netcdf - CMake configure and build phase ran with no errors - Clubb was functional after the build * Fixed to work as a fresh user - Worked with no netcdf and a clean clone of this branch * Added blank line * Got compile.py to run on gfortran, nvhpc, ifort, ifx - Needs testing for with/without netcdf pre-installed * Fixed compiler logic - Basically, if not matching the default (gfortran) netcdf, and can't find a different one, then go from scratch. * Small bug fixes * Cleaned up code, all lines less than 100 characters * Commented through code * Removing redundancy * Fixes to make -gptl flag work * Improved comments, replaced .bash with .py in readme's 2026-05-04 18:40:51 -0500f146255f50732c445ccbd012ca45888a9ce44d0bCmake netcdf fallback 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description of the test harness functionality. 2026-06-02 16:26:28 -05004f132e2cf1bea29284b46b82a0b5006a2b23249aUpdate JAX conversion plan for clarity and detaileditclubb_jax/JAX_CONVERSION_PLAN.mdgithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse22http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/22/Started by an SCM change207b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbrefs/remotes/origin/master7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbrefs/remotes/origin/master7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbrefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#2072929233409clubb_python_test #2020false203886FAILURE1779869048901http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/20/clubb_python_api/f2py_fortran_wrappers/advance_helper_module_wrapper.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/advance_xp3_module.F90clubb_jax/advance_clubb_core.pyclubb_python_api/clubb_python/clubb_api.pyclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90clubb_python_driver/advance_clubb_core.pyclubb_python_api/clubb_python/CLUBB_core/advance_helper.pysrc/CLUBB_core/stats_clubb_utilities.F90clubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pysrc/CLUBB_core/advance_helper_module.F90clubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pysrc/G_unit_test_types/spurious_source_test.F90clubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90clubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90clubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90clubb_python_api/tests/test_call_tree_advance_xp3.pyclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pysrc/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90clubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyclubb_python_api/tests/test_call_tree_stats_accumulate.pyclubb_python_api/clubb_f2py.pyfclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.py7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb1779832578000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb organization part2 (#1304) A number of fields were being calculated in `advance_clubb_core` (`wp2_zt` `wp3_on_wp2` `wp3_on_wp2_zt` `Skw_zm` `Skw_zt) then passed into other routines, however, all these fields depend on `wp2` and were not being updated after `wp2` was being updated by `calc_sfc_varnce`. This commit fixes that by moving where these fields are calculated - instead of computing in `advance_clubb_core` with the incoming `wp2`, we now calculate them "on-demand" where they are needed using the most recent value of `wp2`. Using our default flag set, there are no numerical differences caused by this change set, only a few stats differences. There are real differences that occur when `l_upwind_xpyp_ta = .false.` (a clubb_config_flag value) or when `l_explicit_turbulent_adv_xpyp = .true.` (a parameter in model_flags.F90), but these are small differences and do not visually affect plots for our stable cases. Changing the order of the `advance_` routines would also cause this to be BIT_CHANGING, since that also affects the update path for `wp2` - now these values that got moved would be using the newest `wp2` instead of being "stale", also causing small (but real) differences. * Calculating wp2_zt and wp3_on_wp2 where needed, rather than passing those values around through advance_clubb_core. This is BIT_CHANGING for a handful of stats only variables be default: wp3_on_wp2, wp3_on_wp2_zt, wp3_on_wp2_cfl_num, term_wprtp2_explicit, term_wprtpthlp_explicit, and term_wpthlp2_explicit. Some Skw_ variables when using lmm_stepping, and has actual differences (not just in stats output) when swapping the order of the advance routines * Moving things around, this seems to all be BFB except for the Skw_ movements, which is BIT_CHANGING if the advance_ order changes * Fixing python API * Reverting some BFB changes 2026-05-26 16:56:18 -05007b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbClubb organization part2 (#1304)editclubb_python_api/clubb_python/CLUBB_core/advance_helper.pyeditclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyeditclubb_jax/advance_clubb_core.pyeditclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyeditclubb_python_api/clubb_python/clubb_api.pyeditclubb_python_api/clubb_f2py.pyfeditsrc/CLUBB_core/advance_helper_module.F90editclubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90editclubb_python_driver/advance_clubb_core.pyeditsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyeditclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyeditsrc/G_unit_test_types/spurious_source_test.F90editclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90editclubb_python_api/f2py_fortran_wrappers/advance_helper_module_wrapper.F90editclubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90editclubb_python_api/tests/test_call_tree_stats_accumulate.pyeditsrc/CLUBB_core/advance_xm_wpxp_module.F90editclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyeditclubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90editclubb_python_api/tests/test_call_tree_advance_xp3.pyeditsrc/CLUBB_core/advance_wp2_wp3_module.F90editclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyeditsrc/CLUBB_core/advance_xp3_module.F90githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse21http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/21/19http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/19/Started by an SCM change234f132e2cf1bea29284b46b82a0b5006a2b23249a4f132e2cf1bea29284b46b82a0b5006a2b23249arefs/remotes/origin/master4f132e2cf1bea29284b46b82a0b5006a2b23249a4f132e2cf1bea29284b46b82a0b5006a2b23249arefs/remotes/origin/master4f132e2cf1bea29284b46b82a0b5006a2b23249a4f132e2cf1bea29284b46b82a0b5006a2b23249arefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#23259856233409clubb_python_test #2323false234195SUCCESS1780473849723http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/23/clubb_jax/JAX_CONVERSION_PLAN.md4f132e2cf1bea29284b46b82a0b5006a2b23249a1780435588000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate JAX conversion plan for clarity and detail Clarified the role of clubb_python_api in the conversion process and improved the description of the test harness functionality. 2026-06-02 16:26:28 -05004f132e2cf1bea29284b46b82a0b5006a2b23249aUpdate JAX conversion plan for clarity and detaileditclubb_jax/JAX_CONVERSION_PLAN.mdgithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse22http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/22/Started by an SCM change234f132e2cf1bea29284b46b82a0b5006a2b23249a4f132e2cf1bea29284b46b82a0b5006a2b23249arefs/remotes/origin/master4f132e2cf1bea29284b46b82a0b5006a2b23249a4f132e2cf1bea29284b46b82a0b5006a2b23249arefs/remotes/origin/master4f132e2cf1bea29284b46b82a0b5006a2b23249a4f132e2cf1bea29284b46b82a0b5006a2b23249arefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#23259856233409clubb_python_test #2323false234195SUCCESS1780473849723http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/23/clubb_jax/JAX_CONVERSION_PLAN.md4f132e2cf1bea29284b46b82a0b5006a2b23249a1780435588000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comUpdate JAX conversion plan for clarity and detail Clarified the role of clubb_python_api in the conversion process and improved the description of the test harness functionality. 2026-06-02 16:26:28 -05004f132e2cf1bea29284b46b82a0b5006a2b23249aUpdate JAX conversion plan for clarity and detaileditclubb_jax/JAX_CONVERSION_PLAN.mdgithttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse22http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/22/Started by an SCM change207b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbrefs/remotes/origin/master7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbrefs/remotes/origin/master7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbrefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#2072929233409clubb_python_test #2020false203886FAILURE1779869048901http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/20/clubb_python_api/f2py_fortran_wrappers/advance_helper_module_wrapper.F90src/CLUBB_core/advance_wp2_wp3_module.F90src/CLUBB_core/advance_xp3_module.F90clubb_jax/advance_clubb_core.pyclubb_python_api/clubb_python/clubb_api.pyclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90clubb_python_driver/advance_clubb_core.pyclubb_python_api/clubb_python/CLUBB_core/advance_helper.pysrc/CLUBB_core/stats_clubb_utilities.F90clubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pysrc/CLUBB_core/advance_helper_module.F90clubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pysrc/G_unit_test_types/spurious_source_test.F90clubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90clubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90clubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90clubb_python_api/tests/test_call_tree_advance_xp3.pyclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pysrc/CLUBB_core/advance_xp2_xpyp_module.F90src/CLUBB_core/advance_clubb_core_module.F90src/CLUBB_core/advance_xm_wpxp_module.F90clubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyclubb_python_api/tests/test_call_tree_stats_accumulate.pyclubb_python_api/clubb_f2py.pyfclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.py7b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdb1779832578000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comClubb organization part2 (#1304) A number of fields were being calculated in `advance_clubb_core` (`wp2_zt` `wp3_on_wp2` `wp3_on_wp2_zt` `Skw_zm` `Skw_zt) then passed into other routines, however, all these fields depend on `wp2` and were not being updated after `wp2` was being updated by `calc_sfc_varnce`. This commit fixes that by moving where these fields are calculated - instead of computing in `advance_clubb_core` with the incoming `wp2`, we now calculate them "on-demand" where they are needed using the most recent value of `wp2`. Using our default flag set, there are no numerical differences caused by this change set, only a few stats differences. There are real differences that occur when `l_upwind_xpyp_ta = .false.` (a clubb_config_flag value) or when `l_explicit_turbulent_adv_xpyp = .true.` (a parameter in model_flags.F90), but these are small differences and do not visually affect plots for our stable cases. Changing the order of the `advance_` routines would also cause this to be BIT_CHANGING, since that also affects the update path for `wp2` - now these values that got moved would be using the newest `wp2` instead of being "stale", also causing small (but real) differences. * Calculating wp2_zt and wp3_on_wp2 where needed, rather than passing those values around through advance_clubb_core. This is BIT_CHANGING for a handful of stats only variables be default: wp3_on_wp2, wp3_on_wp2_zt, wp3_on_wp2_cfl_num, term_wprtp2_explicit, term_wprtpthlp_explicit, and term_wpthlp2_explicit. Some Skw_ variables when using lmm_stepping, and has actual differences (not just in stats output) when swapping the order of the advance routines * Moving things around, this seems to all be BFB except for the Skw_ movements, which is BIT_CHANGING if the advance_ order changes * Fixing python API * Reverting some BFB changes 2026-05-26 16:56:18 -05007b5214a7a0382d3b5d2df0f7b8a8f11bd11f4bdbClubb organization part2 (#1304)editclubb_python_api/clubb_python/CLUBB_core/advance_helper.pyeditclubb_python_api/tests/test_call_tree_advance_xm_wpxp.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xm_wpxp.pyeditclubb_jax/advance_clubb_core.pyeditclubb_python_api/clubb_python/CLUBB_core/stats_clubb_utilities.pyeditclubb_python_api/clubb_python/clubb_api.pyeditclubb_python_api/clubb_f2py.pyfeditsrc/CLUBB_core/advance_helper_module.F90editclubb_python_api/f2py_fortran_wrappers/advance_xp2_xpyp_module_wrapper.F90editclubb_python_driver/advance_clubb_core.pyeditsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/advance_xp2_xpyp_module.F90editsrc/CLUBB_core/stats_clubb_utilities.F90editclubb_python_api/clubb_python/CLUBB_core/advance_wp2_wp3.pyeditclubb_python_api/clubb_python/CLUBB_core/advance_xp2_xpyp.pyeditclubb_python_api/tests/test_call_tree_advance_wp2_wp3.pyeditsrc/G_unit_test_types/spurious_source_test.F90editclubb_python_api/f2py_fortran_wrappers/advance_wp2_wp3_module_wrapper.F90editclubb_python_api/f2py_fortran_wrappers/advance_helper_module_wrapper.F90editclubb_python_api/f2py_fortran_wrappers/advance_xm_wpxp_module_wrapper.F90editclubb_python_api/tests/test_call_tree_stats_accumulate.pyeditsrc/CLUBB_core/advance_xm_wpxp_module.F90editclubb_python_api/clubb_python/CLUBB_core/advance_xp3.pyeditclubb_python_api/f2py_fortran_wrappers/stats_clubb_utilities_wrapper.F90editclubb_python_api/tests/test_call_tree_advance_xp3.pyeditsrc/CLUBB_core/advance_wp2_wp3_module.F90editclubb_python_api/tests/test_call_tree_advance_xp2_xpyp.pyeditsrc/CLUBB_core/advance_xp3_module.F90githttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse21http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/21/19http://carson.math.uwm.edu/jenkins/view/all/job/clubb_python_test/19/24truefalsefalsefalse