+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-fq24mybyn2li6got2bxzk62ejh5d3p4z/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-nhc23hl,
netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-nhc23hl, netcdf-c/4.9.2-xduzp77, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ bash clubb_python_api/run_pytests.sh -v
============================= test session starts ==============================
platform linux -- Python 3.10.12, pytest-9.0.3, pluggy-1.6.0 -- /usr/bin/python3
cachedir: .pytest_cache
rootdir: /home/jenkins/workspace/clubb_python_test/clubb_python_api
collecting ... Fatal Python error: Aborted
Current thread 0x0000775da0326740 (most recent call first):
File "/home/jenkins/workspace/clubb_python_test/clubb_python_api/clubb_python/CLUBB_core/parameters_tunable.py", line 32 in <listcomp>
File "/home/jenkins/workspace/clubb_python_test/clubb_python_api/clubb_python/CLUBB_core/parameters_tunable.py", line 32 in get_param_names
File "/home/jenkins/workspace/clubb_python_test/clubb_python_api/tests/test_stats.py", line 38 in <module>
File "/usr/local/lib/python3.10/dist-packages/_pytest/assertion/rewrite.py", line 197 in exec_module
File "<frozen importlib._bootstrap>", line 688 in _load_unlocked
File "<frozen importlib._bootstrap>", line 1006 in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 1027 in _find_and_load
File "<frozen importlib._bootstrap>", line 1050 in _gcd_import
File "/usr/lib/python3.10/importlib/__init__.py", line 126 in import_module
File "/usr/local/lib/python3.10/dist-packages/_pytest/pathlib.py", line 587 in import_path
File "/usr/local/lib/python3.10/dist-packages/_pytest/python.py", line 507 in importtestmodule
File "/usr/local/lib/python3.10/dist-packages/_pytest/python.py", line 560 in _getobj
File "/usr/local/lib/python3.10/dist-packages/_pytest/python.py", line 289 in obj
File "/usr/local/lib/python3.10/dist-packages/_pytest/python.py", line 576 in _register_setup_module_fixture
File "/usr/local/lib/python3.10/dist-packages/_pytest/python.py", line 563 in collect
File "/usr/local/lib/python3.10/dist-packages/_pytest/runner.py", line 398 in collect
File "/usr/local/lib/python3.10/dist-packages/_pytest/runner.py", line 353 in from_call
File "/usr/local/lib/python3.10/dist-packages/_pytest/runner.py", line 400 in pytest_make_collect_report
File "/usr/local/lib/python3.10/dist-packages/pluggy/_callers.py", line 121 in _multicall
File "/usr/local/lib/python3.10/dist-packages/pluggy/_manager.py", line 120 in _hookexec
File "/usr/local/lib/python3.10/dist-packages/pluggy/_hooks.py", line 512 in __call__
File "/usr/local/lib/python3.10/dist-packages/_pytest/runner.py", line 576 in collect_one_node
File "/usr/local/lib/python3.10/dist-packages/_pytest/main.py", line 883 in _collect_one_node
File "/usr/local/lib/python3.10/dist-packages/_pytest/main.py", line 1020 in genitems
File "/usr/local/lib/python3.10/dist-packages/_pytest/main.py", line 1023 in genitems
File "/usr/local/lib/python3.10/dist-packages/_pytest/main.py", line 857 in perform_collect
File "/usr/local/lib/python3.10/dist-packages/_pytest/main.py", line 382 in pytest_collection
File "/usr/local/lib/python3.10/dist-packages/pluggy/_callers.py", line 121 in _multicall
File "/usr/local/lib/python3.10/dist-packages/pluggy/_manager.py", line 120 in _hookexec
File "/usr/local/lib/python3.10/dist-packages/pluggy/_hooks.py", line 512 in __call__
File "/usr/local/lib/python3.10/dist-packages/_pytest/main.py", line 371 in _main
File "/usr/local/lib/python3.10/dist-packages/_pytest/main.py", line 318 in wrap_session
File "/usr/local/lib/python3.10/dist-packages/_pytest/main.py", line 365 in pytest_cmdline_main
File "/usr/local/lib/python3.10/dist-packages/pluggy/_callers.py", line 121 in _multicall
File "/usr/local/lib/python3.10/dist-packages/pluggy/_manager.py", line 120 in _hookexec
File "/usr/local/lib/python3.10/dist-packages/pluggy/_hooks.py", line 512 in __call__
File "/usr/local/lib/python3.10/dist-packages/_pytest/config/__init__.py", line 199 in main
File "/usr/local/lib/python3.10/dist-packages/_pytest/config/__init__.py", line 223 in console_main
File "/usr/local/lib/python3.10/dist-packages/pytest/__main__.py", line 9 in <module>
File "/usr/lib/python3.10/runpy.py", line 86 in _run_code
File "/usr/lib/python3.10/runpy.py", line 196 in _run_module_as_main
Extension modules: numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg.lapack_lite, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, clubb_f2py, cftime._cftime, netCDF4._netCDF4 (total: 17)
clubb_python_api/run_pytests.sh: line 26: 2726243 Aborted (core dumped) python3 -m pytest tests/ "$@"
