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radiation update (#1283)

* Compartmentalizing radiation code a bit

* More compartmentalizing

* Pushing loop into bugsrad because it makes things cleaner

* Small loop pushes

* Little cleanup

* Moving soil_veg code

* GPU fix and a little cleanup

* Missed a file to commit

* Making work with old build system

* Need zeroing routines for set_case_initial_conditions

* Adding comment explaining why advance_soil_veg is being packaged with Radiation code now
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* Mainly dash app improvements, but also removing unused args from stats and improving run scripts

* Small update to ui in run tab

* Improvements to make plotting faster, fixing various bugs, making things more robust, and adding more run modification fields (out_dir/dt_main/etc)

* Adding les plotting capabilities, lots of tiny improvements

* Reverting run_bindiff_all.py

* Tiny quality of life improvements - fixing port conflict, opening in browser automatically, and defaulting to the run_tab instead of requiring a first click
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</comment><date>2026-03-18 20:15:01 -0500</date><id>d3c5a22e8d71e7224d34ffe7c7d2276679df7492</id><msg>Now that the adg1_ routines prevent below threshold wp2 and xp2 values, we also need these max statements in this unit test too</msg><path><editType>edit</editType><file>src/G_unit_test_types/spurious_source_test.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/run_bindiff_all.py</affectedPath><commitId>d20fd1daad5e5d921607794e258bfde151fd3c89</commitId><timestamp>1773884674000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Previous commit (49bd72c6b6ee57f27c7694b25facd1b0eb91bd09) fixed a stats bug that caused parameter names to not be stored in the netcdf file - so now run_bindiff_all.py has to ignore those. Fixed by ignoring all non-numeric variables.
</comment><date>2026-03-18 20:44:34 -0500</date><id>d20fd1daad5e5d921607794e258bfde151fd3c89</id><msg>Previous commit (49bd72c6b6ee57f27c7694b25facd1b0eb91bd09) fixed a stats bug that caused parameter names to not be stored in the netcdf file - so now run_bindiff_all.py has to ignore those. Fixed by ignoring all non-numeric variables.</msg><path><editType>edit</editType><file>run_scripts/run_bindiff_all.py</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>27</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_plot_solver_compare/27/</url></nextBuild><previousBuild><number>25</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_plot_solver_compare/25/</url></previousBuild></nextBuild><previousBuild><action _class='hudson.model.CauseAction'><cause _class='hudson.triggers.SCMTrigger$SCMTriggerCause'><shortDescription>Started by an SCM change</shortDescription></cause></action><action></action><action _class='org.jenkinsci.plugins.workflow.libs.LibrariesAction'></action><action></action><action></action><action _class='hudson.plugins.git.util.BuildData'><buildsByBranchName><refsremotesoriginmaster _class='hudson.plugins.git.util.Build'><buildNumber>24</buildNumber><marked><SHA1>bdee6e6dbac76a996cdf73a88522c47affdd4d90</SHA1><branch><SHA1>bdee6e6dbac76a996cdf73a88522c47affdd4d90</SHA1><name>refs/remotes/origin/master</name></branch></marked><revision><SHA1>bdee6e6dbac76a996cdf73a88522c47affdd4d90</SHA1><branch><SHA1>bdee6e6dbac76a996cdf73a88522c47affdd4d90</SHA1><name>refs/remotes/origin/master</name></branch></revision></refsremotesoriginmaster></buildsByBranchName><lastBuiltRevision><SHA1>bdee6e6dbac76a996cdf73a88522c47affdd4d90</SHA1><branch><SHA1>bdee6e6dbac76a996cdf73a88522c47affdd4d90</SHA1><name>refs/remotes/origin/master</name></branch></lastBuiltRevision><remoteUrl>https://github.com/larson-group/clubb.git</remoteUrl><scmName></scmName></action><action></action><action _class='org.jenkinsci.plugins.workflow.cps.EnvActionImpl'></action><action></action><action></action><action></action><action></action><action _class='org.jenkinsci.plugins.displayurlapi.actions.RunDisplayAction'></action><action _class='org.jenkinsci.plugins.pipeline.modeldefinition.actions.RestartDeclarativePipelineAction'></action><action></action><action _class='org.jenkinsci.plugins.workflow.job.views.FlowGraphAction'></action><action></action><action></action><action></action><building>false</building><displayName>#24</displayName><duration>608857</duration><estimatedDuration>681375</estimatedDuration><fullDisplayName>clubb_plot_solver_compare #24</fullDisplayName><id>24</id><keepLog>false</keepLog><number>24</number><queueId>2178</queueId><result>SUCCESS</result><timestamp>1773821168050</timestamp><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_plot_solver_compare/24/</url><changeSet _class='hudson.plugins.git.GitChangeSetList'><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>jenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfile</affectedPath><affectedPath>jenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfile</affectedPath><commitId>02123793194ca95295bbd90c35129faf395b9525</commitId><timestamp>1773771251000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Toolchain names were changed, so the references to them should've changed in the jenkins tests.
</comment><date>2026-03-17 13:14:11 -0500</date><id>02123793194ca95295bbd90c35129faf395b9525</id><msg>Toolchain names were changed, so the references to them should've changed in the jenkins tests.</msg><path><editType>edit</editType><file>jenkins_tests/clubb_nvhpc_gpu_vs_cpu_diffness/Jenkinsfile</file></path><path><editType>edit</editType><file>jenkins_tests/clubb_nvhpc_gpu_column_mirror_test/Jenkinsfile</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>run_scripts/test_monoflux_limiter_GPU.py</affectedPath><commitId>36ca61e3203b201832c5ca74ce764fc7e97786a8</commitId><timestamp>1773771352000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></author><authorEmail>huebler@uwm.edu</authorEmail><comment>Toolchain names were changed, so the references to them should've changed in this test too.
</comment><date>2026-03-17 13:15:52 -0500</date><id>36ca61e3203b201832c5ca74ce764fc7e97786a8</id><msg>Toolchain names were changed, so the references to them should've changed in this test too.</msg><path><editType>edit</editType><file>run_scripts/test_monoflux_limiter_GPU.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/G_unit_test_types/pdf_parameter_tests.F90</affectedPath><affectedPath>src/G_unit_tests.F90</affectedPath><affectedPath>src/CLUBB_core/adg1_adg2_3d_luhar_pdf.F90</affectedPath><affectedPath>src/G_unit_test_types/spurious_source_test.F90</affectedPath><commitId>c15b1d3c005fdffa76902e976acdb5db5dbde012</commitId><timestamp>1773804486000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>ADG1_w_closure consistency fix (#1282)

* G_unit_test / ADG1_w_closure fix. A recent commit (bff619bdb2836f83ac658be8b8c258d41aaa6e14) introduced a change to ADG1_ADG2_responder_params that caused an inconsistency in the pdf calculations that the G_unit tests picked up on. This corrects it, but is also BIT_CHANGING, since it changes the calculation slightly when wp2 is exactly tolerance.

* Adding test to ensure err_info is correctly set by adg1 routines when calling with bad inputs - also moving wp2 check to ADG1_w_closure because it makes more sense there
</comment><date>2026-03-17 22:28:06 -0500</date><id>c15b1d3c005fdffa76902e976acdb5db5dbde012</id><msg>ADG1_w_closure consistency fix (#1282)</msg><path><editType>edit</editType><file>src/G_unit_test_types/pdf_parameter_tests.F90</file></path><path><editType>edit</editType><file>src/G_unit_tests.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/adg1_adg2_3d_luhar_pdf.F90</file></path><path><editType>edit</editType><file>src/G_unit_test_types/spurious_source_test.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/matrix_solver_wrapper.F90</affectedPath><affectedPath>jenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfile</affectedPath><affectedPath>run_scripts/test_fatal_error_handling.py</affectedPath><affectedPath>src/CLUBB_core/lapack_wrap.F90</affectedPath><commitId>bdee6e6dbac76a996cdf73a88522c47affdd4d90</commitId><timestamp>1773805495000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Fixing clubb_error_handling_gfortran_test (#1281)

* Fixing error test by making the code check for NaNs in all solver cases - before it was only checking in Lapack. Also making a python version of the test and updating jenkins script to use it.

* A little cleanup

* Adding more comments and making a little data structure for the tests
</comment><date>2026-03-17 22:44:55 -0500</date><id>bdee6e6dbac76a996cdf73a88522c47affdd4d90</id><msg>Fixing clubb_error_handling_gfortran_test (#1281)</msg><path><editType>edit</editType><file>jenkins_tests/clubb_error_handling_gfortran_test/Jenkinsfile</file></path><path><editType>edit</editType><file>src/CLUBB_core/lapack_wrap.F90</file></path><path><editType>add</editType><file>run_scripts/test_fatal_error_handling.py</file></path><path><editType>edit</editType><file>src/CLUBB_core/matrix_solver_wrapper.F90</file></path></item><kind>git</kind></changeSet><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></culprit><culprit><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/huebler</absoluteUrl><fullName>Gunther Huebler</fullName></culprit><inProgress>false</inProgress><nextBuild><number>25</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_plot_solver_compare/25/</url></nextBuild><previousBuild><number>23</number><url>http://carson.math.uwm.edu/jenkins/view/all/job/clubb_plot_solver_compare/23/</url></previousBuild></previousBuild></workflowRun>