Started by an SCM change8512407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master12407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master70b19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixesb19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixes64b928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_hostb928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_host513bb786ccdfdd654621de358074de535e815b1353dbb786ccdfdd654621de358074de535e815b1353drefs/remotes/origin/masterbb786ccdfdd654621de358074de535e815b1353dbb786ccdfdd654621de358074de535e815b1353drefs/remotes/origin/masterbb786ccdfdd654621de358074de535e815b1353dbb786ccdfdd654621de358074de535e815b1353drefs/remotes/origin/masterhttps://github.com/larson-group/clubb.githttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_mac_gfortran_test/detail/clubb_mac_gfortran_test/513/artifactshttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_mac_gfortran_test/detail/clubb_mac_gfortran_test/513/changeshttp://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_mac_gfortran_test/detail/clubb_mac_gfortran_test/513/http://carson.math.uwm.edu/jenkins/blue/organizations/jenkins/clubb_mac_gfortran_test/detail/clubb_mac_gfortran_test/513/testsfalseCompileRun Clubbfalse#51323667812207721clubb_mac_gfortran_test #513513false51325070SUCCESS1693643887443http://carson.math.uwm.edu/jenkins/view/all/job/clubb_mac_gfortran_test/513/utilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/analyze_sensitivity_matrix.pybb786ccdfdd654621de358074de535e815b1353d1693606359000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: refactored to use more subroutines and added a bar chart of column vectors (one per tuning parameter.) For #910. 2023-09-01 17:12:39 -0500bb786ccdfdd654621de358074de535e815b1353dQuadTune: refactored to use more subroutineseditutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/analyze_sensitivity_matrix.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pygithttp://carson.math.uwm.edu/jenkins/user/vlarsonVince LarsonvlarsonfalseStarted by an SCM change8512407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master12407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master70b19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixesb19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixes64b928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_hostb928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_host5146de84c3d28a538d620009cbe3d98a634782820be6de84c3d28a538d620009cbe3d98a634782820berefs/remotes/origin/master6de84c3d28a538d620009cbe3d98a634782820be6de84c3d28a538d620009cbe3d98a634782820berefs/remotes/origin/master6de84c3d28a538d620009cbe3d98a634782820be6de84c3d28a538d620009cbe3d98a634782820berefs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#514314122078312207721clubb_mac_gfortran_test #514514false51425812SUCCESS1693989489948http://carson.math.uwm.edu/jenkins/view/all/job/clubb_mac_gfortran_test/514/src/CLUBB_core/advance_clubb_core_module.F90src/error.F90src/CLUBB_core/advance_helper_module.F90c1f62c5040949404906f8d13ecb9cf7ee88f4ce51693937947000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comFixed some oversights for the bv_efold commits and increased string length for tuning field names for invrs_tau variables - CLUBB ticket #1069 (#1106) This commit is NOT bit changing - Removed remaining mentions of brunt_vaisala_freq_sqd_plus - Added assignment for invrs_tau_wp3_zm in Lscale mode in advance_clubb_core - Increased length of string variables hoc_v, les_v, and t_variables in src/error.F90 to accomodate tuning for invrs_tau fields 2023-09-05 13:19:07 -0500c1f62c5040949404906f8d13ecb9cf7ee88f4ce5Fixed some oversights for the bv_efold commits and increased string length for tuning field names for invrs_tau variables - CLUBB ticket #1069 (#1106)editsrc/error.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/advance_helper_module.F90src/CLUBB_core/mixing_length.F90346643e9a3d430e30182bc4b244f6251fdf50b9e1693950812000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comBIT_CHANGING! brunt_vaisala_freq_sqd_mixed now replaces brunt_vaisala_freq_sqd for later calculations - CLUBB ticket #1102 Changes in src/CLUBB_core/mixing_length.F90: - brunt_vaisala_freq_sqd_mixed is now used to calculate brunt_vaisala_freq_sqd_smth and brunt_vaisala_freq_sqd_clipped instead of brunt_vaisala_freq_sqd - Removed 0.1 factor for bkgnd term in calculation of invrs_tau_xp2_zm - Commented out clipping of invrs_tau_xp2_zm to 0.003 and lower out of cloud 2023-09-05 16:53:32 -0500346643e9a3d430e30182bc4b244f6251fdf50b9eBIT_CHANGING! brunt_vaisala_freq_sqd_mixed now replaces brunt_vaisala_freq_sqd for later calculations - CLUBB ticket #1102editsrc/CLUBB_core/mixing_length.F90postprocessing/pyplotgen/config/VariableGroupBaseBudgetsLumpedBuoy.pypostprocessing/pyplotgen/README.mdpostprocessing/pyplotgen/src/CaseGallerySetup.pypostprocessing/pyplotgen/pyplotgen.py35388814c501b3b4754806ecdb494cbcadc77d0a1694154859000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded option to plot "Lumped Buoyance Budgets" (wpxp_bp combined with wpxp_pr3) to the pyplotgen plotter for CLUBB. 2023-09-08 01:34:19 -050035388814c501b3b4754806ecdb494cbcadc77d0aAdded option to plot "Lumped Buoyance Budgets" (wpxp_bp combined witheditpostprocessing/pyplotgen/src/CaseGallerySetup.pyeditpostprocessing/pyplotgen/pyplotgen.pyaddpostprocessing/pyplotgen/config/VariableGroupBaseBudgetsLumpedBuoy.pyeditpostprocessing/pyplotgen/README.mdpostprocessing/pyplotgen/src/CaseGallerySetup.pydb8ea9192a6aa0da6612223ebf569e46f293c92d1694155550000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduAdded a statement that I had previously omitted. The new combined budget works great! 2023-09-08 01:45:50 -0500db8ea9192a6aa0da6612223ebf569e46f293c92dAdded a statement that I had previously omitted. The new combined budgeteditpostprocessing/pyplotgen/src/CaseGallerySetup.pypostprocessing/pyplotgen/src/Panel.pypostprocessing/pyplotgen/src/VariableGroup.py616669cf5f2194502e9ecbafb2d267635d439c321694492156000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduUpdating pyplotgen to include a "contour" plot of rcm in the background. This will be made optional with the next commit. 2023-09-11 23:15:56 -0500616669cf5f2194502e9ecbafb2d267635d439c32Updating pyplotgen to include a "contour" plot of rcm in the background.editpostprocessing/pyplotgen/src/Panel.pyeditpostprocessing/pyplotgen/src/VariableGroup.pypostprocessing/pyplotgen/config/VariableGroupWs.pypostprocessing/pyplotgen/src/Panel.pypostprocessing/pyplotgen/README.mdpostprocessing/pyplotgen/pyplotgen.pypostprocessing/pyplotgen/config/VariableGroupBase.pypostprocessing/pyplotgen/src/CaseGallerySetup.pypostprocessing/pyplotgen/src/VariableGroup.py09e01df1a3bf71ada4cc050fa3f0d52f285b60281694548709000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI added the --background-rcm optional flag to pyplotgen. 2023-09-12 14:58:29 -050009e01df1a3bf71ada4cc050fa3f0d52f285b6028I added the --background-rcm optional flag to pyplotgen.editpostprocessing/pyplotgen/config/VariableGroupWs.pyeditpostprocessing/pyplotgen/src/Panel.pyeditpostprocessing/pyplotgen/config/VariableGroupBase.pyeditpostprocessing/pyplotgen/README.mdeditpostprocessing/pyplotgen/pyplotgen.pyeditpostprocessing/pyplotgen/src/CaseGallerySetup.pyeditpostprocessing/pyplotgen/src/VariableGroup.pypostprocessing/pyplotgen/config/VariableGroupSubcolumns.pypostprocessing/pyplotgen/config/VariableGroupBaseBudgets.pypostprocessing/pyplotgen/config/VariableGroupLiquidMP.pypostprocessing/pyplotgen/config/VariableGroupCorrelations.pypostprocessing/pyplotgen/config/VariableGroupTaus.pypostprocessing/pyplotgen/config/VariableGroupNormalizedVariations.pypostprocessing/pyplotgen/config/VariableGroupKKMP.pypostprocessing/pyplotgen/config/VariableGroupSamBudgets.pypostprocessing/pyplotgen/config/VariableGroupNondimMoments.pypostprocessing/pyplotgen/config/VariableGroupIceMP.pypostprocessing/pyplotgen/config/VariableGroupSamMultilineProfiles.pypostprocessing/pyplotgen/config/VariableGroupBaseBudgetsLumpedBuoy.pypostprocessing/pyplotgen/config/VariableGroupSamProfiles.pypostprocessing/pyplotgen/config/VariableGroupScalars.pypostprocessing/pyplotgen/config/VariableGroupBaseBudgetsSamStyle.pycbbd5fc72fb563eb89430f77b0d790b32aea1a4c1694570526000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduSmall additions that allow all cases to run with pyplotgen. 2023-09-12 21:02:06 -0500cbbd5fc72fb563eb89430f77b0d790b32aea1a4cSmall additions that allow all cases to run with pyplotgen.editpostprocessing/pyplotgen/config/VariableGroupBaseBudgetsSamStyle.pyeditpostprocessing/pyplotgen/config/VariableGroupBaseBudgetsLumpedBuoy.pyeditpostprocessing/pyplotgen/config/VariableGroupScalars.pyeditpostprocessing/pyplotgen/config/VariableGroupNondimMoments.pyeditpostprocessing/pyplotgen/config/VariableGroupNormalizedVariations.pyeditpostprocessing/pyplotgen/config/VariableGroupCorrelations.pyeditpostprocessing/pyplotgen/config/VariableGroupIceMP.pyeditpostprocessing/pyplotgen/config/VariableGroupSubcolumns.pyeditpostprocessing/pyplotgen/config/VariableGroupSamProfiles.pyeditpostprocessing/pyplotgen/config/VariableGroupTaus.pyeditpostprocessing/pyplotgen/config/VariableGroupKKMP.pyeditpostprocessing/pyplotgen/config/VariableGroupSamBudgets.pyeditpostprocessing/pyplotgen/config/VariableGroupSamMultilineProfiles.pyeditpostprocessing/pyplotgen/config/VariableGroupLiquidMP.pyeditpostprocessing/pyplotgen/config/VariableGroupBaseBudgets.pypostprocessing/pyplotgen/src/VariableGroup.py693a178ea4becdb7f4950d8406c89a4953bdbbcd1694570977000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduNeeded to remove a print statement. 2023-09-12 21:09:37 -0500693a178ea4becdb7f4950d8406c89a4953bdbbcdNeeded to remove a print statement.editpostprocessing/pyplotgen/src/VariableGroup.pypostprocessing/pyplotgen/config/VariableGroupSubcolumns.pypostprocessing/pyplotgen/config/VariableGroupWs.pypostprocessing/pyplotgen/config/VariableGroupBaseBudgets.pypostprocessing/pyplotgen/config/VariableGroupLiquidMP.pypostprocessing/pyplotgen/config/VariableGroupCorrelations.pypostprocessing/pyplotgen/config/VariableGroupTaus.pypostprocessing/pyplotgen/config/VariableGroupKKMP.pypostprocessing/pyplotgen/config/VariableGroupNormalizedVariations.pypostprocessing/pyplotgen/config/VariableGroupSamBudgets.pypostprocessing/pyplotgen/config/VariableGroupBase.pypostprocessing/pyplotgen/config/VariableGroupNondimMoments.pypostprocessing/pyplotgen/config/VariableGroupIceMP.pypostprocessing/pyplotgen/config/VariableGroupSamMultilineProfiles.pypostprocessing/pyplotgen/config/VariableGroupBaseBudgetsLumpedBuoy.pypostprocessing/pyplotgen/config/VariableGroupSamProfiles.pypostprocessing/pyplotgen/config/VariableGroupScalars.pypostprocessing/pyplotgen/src/CaseGallerySetup.pypostprocessing/pyplotgen/src/VariableGroup.pypostprocessing/pyplotgen/config/VariableGroupBaseBudgetsSamStyle.pyf974d0717da12952984f5f165abf99e4f15861151694628419000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduIn the previous commits for the --background-rcm option of pyplotgen, I had previously thought that the code to extract values of rcm from a file wanted the case name as input, but in actuality it required the directory name instead of the case name. I am correcting that error in this commitment. 2023-09-13 13:06:59 -0500f974d0717da12952984f5f165abf99e4f1586115In the previous commits for the --background-rcm option of pyplotgen,editpostprocessing/pyplotgen/config/VariableGroupTaus.pyeditpostprocessing/pyplotgen/config/VariableGroupKKMP.pyeditpostprocessing/pyplotgen/config/VariableGroupSubcolumns.pyeditpostprocessing/pyplotgen/config/VariableGroupNondimMoments.pyeditpostprocessing/pyplotgen/config/VariableGroupBaseBudgets.pyeditpostprocessing/pyplotgen/config/VariableGroupSamBudgets.pyeditpostprocessing/pyplotgen/src/CaseGallerySetup.pyeditpostprocessing/pyplotgen/config/VariableGroupNormalizedVariations.pyeditpostprocessing/pyplotgen/config/VariableGroupBaseBudgetsSamStyle.pyeditpostprocessing/pyplotgen/config/VariableGroupSamMultilineProfiles.pyeditpostprocessing/pyplotgen/config/VariableGroupSamProfiles.pyeditpostprocessing/pyplotgen/config/VariableGroupBase.pyeditpostprocessing/pyplotgen/config/VariableGroupIceMP.pyeditpostprocessing/pyplotgen/config/VariableGroupScalars.pyeditpostprocessing/pyplotgen/config/VariableGroupWs.pyeditpostprocessing/pyplotgen/src/VariableGroup.pyeditpostprocessing/pyplotgen/config/VariableGroupCorrelations.pyeditpostprocessing/pyplotgen/config/VariableGroupLiquidMP.pyeditpostprocessing/pyplotgen/config/VariableGroupBaseBudgetsLumpedBuoy.pypostprocessing/pyplotgen/src/Panel.py1510c34473a4c7b51f7dd08fb75cff28c701af071694633655000http://carson.math.uwm.edu/jenkins/user/bmg2bmg2bmg2@uwm.eduI am updating the --background-rcm option of pyplotgen to make two changes: 1) Use a grayscale color map. 2) Set the maximum of the colorbar to be twice the largest value in the rcm plot so that the colors aren't so dark. 2023-09-13 14:34:15 -05001510c34473a4c7b51f7dd08fb75cff28c701af07I am updating the --background-rcm option of pyplotgen to make twoeditpostprocessing/pyplotgen/src/Panel.pyinput/tunable_parameters_Lscale/configurable_model_flags.insrc/CLUBB_core/model_flags.F90e29d9d7e6d8b2857cd4f85382d189b21c31332b71694635856000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comBIT_CHANGING for lscale setup. Updated configurable_model_flags.in and model_flags.F90 - CLUBB ticket #1102 (#1108) - Added new flags to inut/tunable_parameters_Lscale/configurable_model_flags.in - Changed default setting for l_use_tke_in_wp3_pr_turb_term in model_flags.F90 from false to true 2023-09-13 15:10:56 -0500e29d9d7e6d8b2857cd4f85382d189b21c31332b7BIT_CHANGING for lscale setup. Updated configurable_model_flags.in and model_flags.F90 - CLUBB ticket #1102 (#1108)editinput/tunable_parameters_Lscale/configurable_model_flags.ineditsrc/CLUBB_core/model_flags.F90utilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.pyfb63ca4ea140c4abedef5567d8c33c331cce9ec11694692835000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Adds chisqd metric and bar chart for a global run. linSolnBiasesCol has been redefined to mean simulation - obs. For #910. 2023-09-14 07:00:35 -0500fb63ca4ea140c4abedef5567d8c33c331cce9ec1QuadTune: Adds chisqd metric and bar chart for a global run.editutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.py5ed8fb8308e908d83cc8c9c34c61b80b0449a9951695125054000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: adds commented-out attempt to vary the bar base but it's not working yet. For #910. 2023-09-19 07:04:14 -05005ed8fb8308e908d83cc8c9c34c61b80b0449a995QuadTune: adds commented-out attempt to vary the bar baseeditutilities/sens_matrix/sens_matrix_dashboard.pysrc/CLUBB_core/advance_clubb_core_module.F90postprocessing/pyplotgen/config/VariableGroupTaus.pyinput/stats/standard_stats.insrc/CLUBB_core/stats_variables.F90input/stats/all_stats.insrc/CLUBB_core/stats_zm_module.F901a81400d8f997d9c9b3a128a4cf4a001dd849b3e1695154187000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comLikely BIT_CHANGING because of added output fields. Added code outputting C6_term and different Brunt Vaisala frequencies to disk - CLUBB ticket #1102 (#1109) - Added C6_term and bv_freq fields to all_stats.F90 and standard_stats.F90 - Added new fields to VariableGroupTaus.py in pyplotgen - Added calls to stat_update_var to advance_clubb_core_module.F90 - Modified stats_variables.F90 and stats_zm_module.F90 accordingly 2023-09-19 15:09:47 -05001a81400d8f997d9c9b3a128a4cf4a001dd849b3eLikely BIT_CHANGING because of added output fields. Added code outputting C6_term and different Brunt Vaisala frequencies to disk - CLUBB ticket #1102 (#1109)editinput/stats/standard_stats.ineditinput/stats/all_stats.ineditsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/stats_variables.F90editsrc/CLUBB_core/stats_zm_module.F90editpostprocessing/pyplotgen/config/VariableGroupTaus.pysrc/CLUBB_core/advance_clubb_core_module.F90input/stats/standard_stats.insrc/CLUBB_core/stats_variables.F90src/CLUBB_core/mixing_length.F90input/stats/all_stats.insrc/CLUBB_core/stats_zm_module.F906654de29a1f573a0a6562d29393a4e18eeabd2ef1695421268000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comChanged sqrt_Ri_zm to Ri_zm in preparation of changing the exponent for calculation of invrs_tau_wpxp_zm in mixing_length.F90 - CLUBB ticket #1102 (#1110) BIT_CHANGING! Changed sqrt_Ri_zm to Ri_zm in preparation of changing the exponent for calculation of invrs_tau_wpxp_zm in mixing_length.F90 - CLUBB ticket #1102 Changes in input/stats/all_stats.in, src/CLUBB_core/advance_clubb_core_module.F90, src/CLUBB_core/mixing_length.F90, src/CLUBB_core/stats_variables.F90, and src/CLUBB_core/stats_zm_module.F90 Ri_zm was added to input/stats/standard_stats.in 2023-09-22 17:21:08 -05006654de29a1f573a0a6562d29393a4e18eeabd2efChanged sqrt_Ri_zm to Ri_zm in preparation of changing the exponent for calculation of invrs_tau_wpxp_zm in mixing_length.F90 - CLUBB ticket #1102 (#1110)editinput/stats/standard_stats.ineditsrc/CLUBB_core/mixing_length.F90editinput/stats/all_stats.ineditsrc/CLUBB_core/stats_zm_module.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/stats_variables.F90postprocessing/pyplotgen/config/VariableGroupTaus.pysrc/CLUBB_core/advance_helper_module.F90src/CLUBB_core/stats_variables.F90input/stats/all_stats.insrc/CLUBB_core/stats_zm_module.F90405d449ae8bc9a7dad1b37fe5cb4964e397bd92e1695428333000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comBIT_CHANGING! Removed Richardson_num and all corresponding code - CLUBB ticket #1102 (#1111) This commit is BIT_CHANGING because: 1. the output field Richardson_num was removed. 2. Since the flag l_use_shear_turb_freq_sqd was removed, the variable shear_sqd is now always written to disk. That means previously, the outputted field shear_sqd was 0 everywhere whereas now it is not anymore. The calculation of shear_sqd within CLUBB did not change! - Removed mentions in input/stats/all_stats.in and standards_stats.in - Removed mentions in src/CLUBB_core/stats_variables.F90 and stats_zm_module.F90 - In src/CLUBB_core/advance_helper_module.F90 removed mentions to [i]Richardson_num[_clipped], as well as l_use_shear_turb_freq_sqd, l_Richardson_vert_avg, and turb_freq_sqd sinc those are only used for calculation of Richardson_num. 2023-09-22 19:18:53 -0500405d449ae8bc9a7dad1b37fe5cb4964e397bd92eBIT_CHANGING! Removed Richardson_num and all corresponding code - CLUBB ticket #1102 (#1111)editsrc/CLUBB_core/advance_helper_module.F90editsrc/CLUBB_core/stats_variables.F90editinput/stats/all_stats.ineditpostprocessing/pyplotgen/config/VariableGroupTaus.pyeditsrc/CLUBB_core/stats_zm_module.F90utilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.pycb5a053323264071fc1a7862137cfd2a06193b191695677623000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Adds fnc to plot a horizonal bar chart for metrics. For #910 2023-09-25 16:33:43 -0500cb5a053323264071fc1a7862137cfd2a06193b19QuadTune: Adds fnc to plot a horizonal bar chart for metrics.editutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/sens_matrix_dashboard.pya4f7432f4f85c2ec4f9d97d723f9574cc13206231695694497000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Includes full perturbation in params bar chart 2023-09-25 21:14:57 -0500a4f7432f4f85c2ec4f9d97d723f9574cc1320623QuadTune: Includes full perturbation in params bar charteditutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/sens_matrix_dashboard.py59786b03dd4afb944e5e9284a2b207220122dbb91696287802000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduQuadTune: Adds new parameter correlation matrix plot. For #910. 2023-10-02 18:03:22 -050059786b03dd4afb944e5e9284a2b207220122dbb9QuadTune: Adds new parameter correlation matrix plot.editutilities/sens_matrix/sens_matrix_dashboard.pyrun_scripts/RUN_CASESrun_scripts/run_bindiff_all.pyinput/stats/standard_stats.inrun_scripts/run_scm.bashinput/stats/all_stats.in6de84c3d28a538d620009cbe3d98a634782820be1696965177000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comMajor overhaul of run_bindiff_all.py CLUBB ticket #1102 - pull request #1113 - Changed the outputs to be more evocative and differentiating between types of differences: Now we can distinguish between differences in the set of variables or differences in specific variables - Fixed the issue where a variable that appears in only one of the compared files would either not be detected or cause the script to crash, depending on the order of input. - Changed file output structure - Changed case handling depending on existing files: - Case is still treated even if it is commented in RUN_CASES - Case is still treated even if not all files exist and messages are printed accordingly 2023-10-10 14:12:57 -05006de84c3d28a538d620009cbe3d98a634782820beMajor overhaul of run_bindiff_all.pyeditrun_scripts/run_bindiff_all.pyeditrun_scripts/run_scm.basheditinput/stats/standard_stats.ineditrun_scripts/RUN_CASESeditinput/stats/all_stats.ingithttp://carson.math.uwm.edu/jenkins/user/bmg2bmg2http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyfalse515http://carson.math.uwm.edu/jenkins/view/all/job/clubb_mac_gfortran_test/515/513http://carson.math.uwm.edu/jenkins/view/all/job/clubb_mac_gfortran_test/513/Started by user cerniktcerniktcernikt8512407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master12407142b14155687d0d80b174796965d2793b1212407142b14155687d0d80b174796965d2793b12origin/master70b19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixesb19b67713baf175f99baa0cb0bdde6e8c1fbc588b19b67713baf175f99baa0cb0bdde6e8c1fbc588origin/grid_fixes64b928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_hostb928767c7238139d599dc55420d2a0956161726ab928767c7238139d599dc55420d2a0956161726aorigin/feeding_gr_to_host512a1bc7132bad1616530c67bbf98b3d0ccfa3e0dc0a1bc7132bad1616530c67bbf98b3d0ccfa3e0dc0refs/remotes/origin/mastera1bc7132bad1616530c67bbf98b3d0ccfa3e0dc0a1bc7132bad1616530c67bbf98b3d0ccfa3e0dc0refs/remotes/origin/mastera1bc7132bad1616530c67bbf98b3d0ccfa3e0dc0a1bc7132bad1616530c67bbf98b3d0ccfa3e0dc0refs/remotes/origin/masterhttps://github.com/larson-group/clubb.gitfalse#51224037812207721clubb_mac_gfortran_test #512512false51225034SUCCESS1693497480754http://carson.math.uwm.edu/jenkins/view/all/job/clubb_mac_gfortran_test/512/src/CLUBB_core/advance_xp2_xpyp_module.F903dbe0a48a7a72173093335aee0a1decee4ed73031690679815000http://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerhuebler@uwm.eduAdding wp_coef and wp_coef_zt to acc data statements. 2023-07-29 20:16:55 -05003dbe0a48a7a72173093335aee0a1decee4ed7303Adding wp_coef and wp_coef_zt to acc data statements.editsrc/CLUBB_core/advance_xp2_xpyp_module.F90utilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.py4739fb54b293d3201087c17e81daa2943f5d76611690802652000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduFor RegTune, update input netcdf files. For #910. 2023-07-31 06:24:12 -05004739fb54b293d3201087c17e81daa2943f5d7661For RegTune, update input netcdf files.editutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pysrc/CLUBB_core/stats_zt_module.F90src/CLUBB_core/advance_clubb_core_module.F90input_misc/tuner/READMEinput/stats/standard_stats.insrc/CLUBB_core/advance_helper_module.F90src/CLUBB_core/mixing_length.F900c7fc1f05bfd096c03e190497c2f2b6b7bba45821690921282000http://carson.math.uwm.edu/jenkins/user/noreplynoreplynoreply@github.comBv efold bit changing (#1095) BIT_CHANGING! Added e-folding code for mixed Brunt Vaisala frequency - CLUBB ticket #1069 - Included usage for bv_efold in src/CLUBB_core/advance_helper_module.F90 - Added intent(out) for correction_stability in subroutine calc_correction_stability - Removed brunt_vaisala_freq_sqd_plus - Idiot proofed interaction between l_diag_Lscale_from_tau and l_use_invrs_tau_N2_iso - Moved stat_update_var(invrs_tau_wp3_zm) out of if ( l_diag_Lscale_from_tau ) - Fixed some typos in src/CLUBB_core/stats_zt_module.F90 - Added comment about to input_misc/tuner/README about t_variables adn input/stats/tuning_stats.in 2023-08-01 15:21:22 -05000c7fc1f05bfd096c03e190497c2f2b6b7bba4582Bv efold bit changing (#1095)editsrc/CLUBB_core/stats_zt_module.F90editsrc/CLUBB_core/advance_clubb_core_module.F90editsrc/CLUBB_core/mixing_length.F90editinput/stats/standard_stats.ineditsrc/CLUBB_core/advance_helper_module.F90editinput_misc/tuner/READMEutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.py9324242cc87f0d692e5bc39f32ac50f3be0b928b1691090871000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduFor RegTune, adds quadratic curves to three-dot plot. For #910. 2023-08-03 14:27:51 -05009324242cc87f0d692e5bc39f32ac50f3be0b928bFor RegTune, adds quadratic curves to three-dot plot.editutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/analyze_sensitivity_matrix.py9ada7441e588502eeb7f757cd0d618d8803bd08d1691504471000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduFor RegTune, defaults to polynomial fit for sensitivity matrix and adds observations of sea-level pressure (PSL). For #910. 2023-08-08 09:21:11 -05009ada7441e588502eeb7f757cd0d618d8803bd08dFor RegTune, defaults to polynomial fit for sensitivity matrixeditutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/analyze_sensitivity_matrix.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/analyze_sensitivity_matrix.pyutilities/sens_matrix/sens_matrix_dashboard.pyb0101dc46f5324451c8273188032bda60d135e411691525024000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduIn RegTune, normalizes metrics by a user-specified number rather than the observed value of the metric. For #910. 2023-08-08 15:03:44 -0500b0101dc46f5324451c8273188032bda60d135e41In RegTune, normalizes metrics by a user-specified numbereditutilities/sens_matrix/analyze_sensitivity_matrix.pyeditutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/analyze_sensitivity_matrix.pyedccdfbf9c5f8ed7c089bee46e30801098af88411692193698000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduFor RegTune, adds color-coded matrix of correlations among parameter vectors. Also, this commit separates the three-dot panel plot into its own function. For #910. 2023-08-16 08:48:18 -0500edccdfbf9c5f8ed7c089bee46e30801098af8841For RegTune, adds color-coded matrix of correlations among parameter vectors.editutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/analyze_sensitivity_matrix.pyutilities/sens_matrix/sens_matrix_dashboard.py31f76a7219f3ed336cc7b2b1159cae4781e672891692200526000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduFor clarity, renames figures in RegTune. For #910. 2023-08-16 10:42:06 -050031f76a7219f3ed336cc7b2b1159cae4781e67289For clarity, renames figures in RegTune.editutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/analyze_sensitivity_matrix.py3ac0cb6b68cff942267f3230f210eaab5aedc1821692223459000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduCreates new function, setUpPreliminaries, in RegTune. setUpPreliminaries calculates some basic quantities that are used later. As part of this refactoring, a number of functions were moved from analyze_sensitivity_matrix to set_up_dashboard_inputs. For #910. 2023-08-16 17:04:19 -05003ac0cb6b68cff942267f3230f210eaab5aedc182Creates new function, setUpPreliminaries, in RegTune.editutilities/sens_matrix/sens_matrix_dashboard.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/analyze_sensitivity_matrix.pyutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.py9d35ffa7e05b85efb23d21700bcf355f007c2b7d1692308947000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduFor RegTune, adds capability to prescribe (not tune) a parameter to a value that is different from the default. The code has not been checked, but it does run and produce plots. For #910. 2023-08-17 16:49:07 -05009d35ffa7e05b85efb23d21700bcf355f007c2b7dFor RegTune, adds capability to prescribe (not tune) a parametereditutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/analyze_sensitivity_matrix.pyutilities/sens_matrix/sens_matrix_dashboard.pyad7158d4527e636e07a389e813d60013ab2afccb1692390497000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduHides print statements in RegTune by using beVerbose=False. For #910. 2023-08-18 15:28:17 -0500ad7158d4527e636e07a389e813d60013ab2afccbHides print statements in RegTune by using beVerbose=False.editutilities/sens_matrix/analyze_sensitivity_matrix.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/sens_matrix_dashboard.py8f7ec02116293f4a2f09d5a92edbf87e56686e5e1692643528000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduFixes bug in QuadTune's code that prescribes parameter values. Also fixes divide-by-zero warning message in dpMin2Pt plotting code. For #910. 2023-08-21 13:45:28 -05008f7ec02116293f4a2f09d5a92edbf87e56686e5eFixes bug in QuadTune's code that prescribes parameter values.editutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pyutilities/sens_matrix/set_up_dashboard_inputs.pyutilities/sens_matrix/analyze_sensitivity_matrix.pyutilities/sens_matrix/sens_matrix_dashboard.pya1bc7132bad1616530c67bbf98b3d0ccfa3e0dc01692818119000http://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonvlarson@uwm.eduAdds basic cost function printouts to QuadTune. Also adds SWCF_RMSE metric. For #910. 2023-08-23 14:15:19 -0500a1bc7132bad1616530c67bbf98b3d0ccfa3e0dc0Adds basic cost function printouts to QuadTune.editutilities/sens_matrix/analyze_sensitivity_matrix.pyeditutilities/sens_matrix/set_up_dashboard_inputs.pyeditutilities/sens_matrix/sens_matrix_dashboard.pygithttp://carson.math.uwm.edu/jenkins/user/vlarsonVince Larsonhttp://carson.math.uwm.edu/jenkins/user/noreplynoreplyhttp://carson.math.uwm.edu/jenkins/user/hueblerGunther Hueblerfalse513http://carson.math.uwm.edu/jenkins/view/all/job/clubb_mac_gfortran_test/513/511http://carson.math.uwm.edu/jenkins/view/all/job/clubb_mac_gfortran_test/511/