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</comment><date>2023-07-29 20:16:55 -0500</date><id>3dbe0a48a7a72173093335aee0a1decee4ed7303</id><msg>Adding wp_coef and wp_coef_zt to acc data statements.</msg><path><editType>edit</editType><file>src/CLUBB_core/advance_xp2_xpyp_module.F90</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>4739fb54b293d3201087c17e81daa2943f5d7661</commitId><timestamp>1690802652000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>For RegTune, update input netcdf files.

For #910.
</comment><date>2023-07-31 06:24:12 -0500</date><id>4739fb54b293d3201087c17e81daa2943f5d7661</id><msg>For RegTune, update input netcdf files.</msg><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>src/CLUBB_core/stats_zt_module.F90</affectedPath><affectedPath>src/CLUBB_core/advance_clubb_core_module.F90</affectedPath><affectedPath>input_misc/tuner/README</affectedPath><affectedPath>src/CLUBB_core/advance_helper_module.F90</affectedPath><affectedPath>input/stats/standard_stats.in</affectedPath><affectedPath>src/CLUBB_core/mixing_length.F90</affectedPath><commitId>0c7fc1f05bfd096c03e190497c2f2b6b7bba4582</commitId><timestamp>1690921282000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/noreply</absoluteUrl><fullName>noreply</fullName></author><authorEmail>noreply@github.com</authorEmail><comment>Bv efold bit changing (#1095)

BIT_CHANGING! Added e-folding code for mixed Brunt Vaisala frequency - CLUBB ticket #1069
- Included usage for bv_efold in src/CLUBB_core/advance_helper_module.F90
- Added intent(out) for correction_stability in subroutine calc_correction_stability
- Removed brunt_vaisala_freq_sqd_plus
- Idiot proofed interaction between l_diag_Lscale_from_tau and l_use_invrs_tau_N2_iso
- Moved stat_update_var(invrs_tau_wp3_zm) out of if ( l_diag_Lscale_from_tau )
- Fixed some typos in src/CLUBB_core/stats_zt_module.F90
- Added comment about to input_misc/tuner/README about t_variables adn input/stats/tuning_stats.in
</comment><date>2023-08-01 15:21:22 -0500</date><id>0c7fc1f05bfd096c03e190497c2f2b6b7bba4582</id><msg>Bv efold bit changing (#1095)</msg><path><editType>edit</editType><file>src/CLUBB_core/mixing_length.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_helper_module.F90</file></path><path><editType>edit</editType><file>src/CLUBB_core/stats_zt_module.F90</file></path><path><editType>edit</editType><file>input/stats/standard_stats.in</file></path><path><editType>edit</editType><file>src/CLUBB_core/advance_clubb_core_module.F90</file></path><path><editType>edit</editType><file>input_misc/tuner/README</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>9324242cc87f0d692e5bc39f32ac50f3be0b928b</commitId><timestamp>1691090871000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>For RegTune, adds quadratic curves to three-dot plot.

For #910.
</comment><date>2023-08-03 14:27:51 -0500</date><id>9324242cc87f0d692e5bc39f32ac50f3be0b928b</id><msg>For RegTune, adds quadratic curves to three-dot plot.</msg><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/analyze_sensitivity_matrix.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>9ada7441e588502eeb7f757cd0d618d8803bd08d</commitId><timestamp>1691504471000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>For RegTune, defaults to polynomial fit for sensitivity matrix
and adds observations of sea-level pressure (PSL).

For #910.
</comment><date>2023-08-08 09:21:11 -0500</date><id>9ada7441e588502eeb7f757cd0d618d8803bd08d</id><msg>For RegTune, defaults to polynomial fit for sensitivity matrix</msg><path><editType>edit</editType><file>utilities/sens_matrix/analyze_sensitivity_matrix.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><affectedPath>utilities/sens_matrix/analyze_sensitivity_matrix.py</affectedPath><commitId>b0101dc46f5324451c8273188032bda60d135e41</commitId><timestamp>1691525024000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>In RegTune, normalizes metrics by a user-specified number
rather than the observed value of the metric.

For #910.
</comment><date>2023-08-08 15:03:44 -0500</date><id>b0101dc46f5324451c8273188032bda60d135e41</id><msg>In RegTune, normalizes metrics by a user-specified number</msg><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/analyze_sensitivity_matrix.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><affectedPath>utilities/sens_matrix/analyze_sensitivity_matrix.py</affectedPath><commitId>edccdfbf9c5f8ed7c089bee46e30801098af8841</commitId><timestamp>1692193698000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>For RegTune, adds color-coded matrix of correlations among parameter vectors.
Also, this commit separates the three-dot panel plot into its own function.

For #910.
</comment><date>2023-08-16 08:48:18 -0500</date><id>edccdfbf9c5f8ed7c089bee46e30801098af8841</id><msg>For RegTune, adds color-coded matrix of correlations among parameter vectors.</msg><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/analyze_sensitivity_matrix.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>31f76a7219f3ed336cc7b2b1159cae4781e67289</commitId><timestamp>1692200526000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>For clarity, renames figures in RegTune.

For #910.
</comment><date>2023-08-16 10:42:06 -0500</date><id>31f76a7219f3ed336cc7b2b1159cae4781e67289</id><msg>For clarity, renames figures in RegTune.</msg><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><affectedPath>utilities/sens_matrix/analyze_sensitivity_matrix.py</affectedPath><commitId>3ac0cb6b68cff942267f3230f210eaab5aedc182</commitId><timestamp>1692223459000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>Creates new function, setUpPreliminaries, in RegTune.
setUpPreliminaries calculates some basic quantities
that are used later.
As part of this refactoring, a number of functions
were moved from analyze_sensitivity_matrix to
set_up_dashboard_inputs.

For #910.
</comment><date>2023-08-16 17:04:19 -0500</date><id>3ac0cb6b68cff942267f3230f210eaab5aedc182</id><msg>Creates new function, setUpPreliminaries, in RegTune.</msg><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/analyze_sensitivity_matrix.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>9d35ffa7e05b85efb23d21700bcf355f007c2b7d</commitId><timestamp>1692308947000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>For RegTune, adds capability to prescribe (not tune) a parameter
to a value that is different from the default.
The code has not been checked, but it does run and produce plots.

For #910.
</comment><date>2023-08-17 16:49:07 -0500</date><id>9d35ffa7e05b85efb23d21700bcf355f007c2b7d</id><msg>For RegTune, adds capability to prescribe (not tune) a parameter</msg><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/analyze_sensitivity_matrix.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>ad7158d4527e636e07a389e813d60013ab2afccb</commitId><timestamp>1692390497000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>Hides print statements in RegTune by using beVerbose=False.

For #910.
</comment><date>2023-08-18 15:28:17 -0500</date><id>ad7158d4527e636e07a389e813d60013ab2afccb</id><msg>Hides print statements in RegTune by using beVerbose=False.</msg><path><editType>edit</editType><file>utilities/sens_matrix/analyze_sensitivity_matrix.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><commitId>8f7ec02116293f4a2f09d5a92edbf87e56686e5e</commitId><timestamp>1692643528000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>Fixes bug in QuadTune's code that prescribes parameter values.
Also fixes divide-by-zero warning message in dpMin2Pt plotting code.

For #910.
</comment><date>2023-08-21 13:45:28 -0500</date><id>8f7ec02116293f4a2f09d5a92edbf87e56686e5e</id><msg>Fixes bug in QuadTune's code that prescribes parameter values.</msg><path><editType>edit</editType><file>utilities/sens_matrix/set_up_dashboard_inputs.py</file></path><path><editType>edit</editType><file>utilities/sens_matrix/sens_matrix_dashboard.py</file></path></item><item _class='hudson.plugins.git.GitChangeSet'><affectedPath>utilities/sens_matrix/set_up_dashboard_inputs.py</affectedPath><affectedPath>utilities/sens_matrix/sens_matrix_dashboard.py</affectedPath><affectedPath>utilities/sens_matrix/analyze_sensitivity_matrix.py</affectedPath><commitId>a1bc7132bad1616530c67bbf98b3d0ccfa3e0dc0</commitId><timestamp>1692818119000</timestamp><author><absoluteUrl>http://carson.math.uwm.edu/jenkins/user/vlarson</absoluteUrl><fullName>Vince Larson</fullName></author><authorEmail>vlarson@uwm.edu</authorEmail><comment>Adds basic cost function printouts to QuadTune.
Also adds SWCF_RMSE metric.

For #910.
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