Console Output
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ulimit -s 8388608
+ python3 tests/run_jax_vs_fortran_cases.py -debug 0 -stats input/stats/standard_stats.in --max-iters 5 --flag-config-file input/flag_sets/run_bindiff_w_flags_config_core_flags.json
==> No Python 3.11+ found; uv will download Python 3.12
==> Installing uv 0.11.32 in /home/jenkins/workspace/clubb_jax_tests_branch/.clubb-jax-tools/bin
downloading uv 0.11.32 x86_64-unknown-linux-gnu
installing to /home/jenkins/workspace/clubb_jax_tests_branch/.clubb-jax-tools/bin
uv
uvx
everything's installed!
==> uv is ready: uv 0.11.32 (x86_64-unknown-linux-gnu)
Downloading cpython-3.12.13-linux-x86_64-gnu (download) (32.6MiB)
Downloaded cpython-3.12.13-linux-x86_64-gnu (download)
Using CPython 3.12.13
Creating virtual environment at: .venv-jax
Activate with: source .venv-jax/bin/activate
==> Installing JAX 0.11.0 (cpu) and requirements from /home/jenkins/workspace/clubb_jax_tests_branch/clubb_jax/requirements.txt
Using Python 3.12.13 environment at: .venv-jax
Resolved 15 packages in 340ms
Downloading pygments (1.2MiB)
Downloading scipy (33.7MiB)
Downloading netcdf4 (9.7MiB)
Downloading numpy (15.9MiB)
Downloading cftime (1.6MiB)
Downloading jaxlib (83.2MiB)
Downloading jax (3.1MiB)
Downloaded cftime
Downloaded pygments
Downloaded netcdf4
Downloaded jax
Downloaded numpy
Downloaded scipy
Downloaded jaxlib
Prepared 15 packages in 3.65s
Installed 15 packages in 43ms
+ certifi==2026.7.22
+ cftime==1.6.5
+ iniconfig==2.3.0
+ jax==0.11.0
+ jaxlib==0.11.0
+ ml-dtypes==0.6.0
+ netcdf4==1.7.4
+ numpy==2.5.3
+ opt-einsum==3.4.0
+ packaging==26.3
+ pluggy==1.6.0
+ pygments==2.21.0
+ pytest==9.1.1
+ scipy==1.18.1
+ tabulate==0.10.0
JAX environment ready: jax=0.11.0 jaxlib=0.11.0 backend=cpu devices=[CpuDevice(id=0)]
Python runtime: /home/jenkins/workspace/clubb_jax_tests_branch/.venv-jax/bin/python (jax=0.11.0 jaxlib=0.11.0 backend=cpu devices=[CpuDevice(id=0)])
Running 13 case(s) x 19 flag set(s) = 247 run pair(s) with 8 worker(s)
Results root: /home/jenkins/workspace/clubb_jax_tests_branch/output/tests/jax_driver_test_results
JAX output: /home/jenkins/workspace/clubb_jax_tests_branch/output/tests/jax_driver_test_results/jax_output
Fortran output: /home/jenkins/workspace/clubb_jax_tests_branch/output/tests/jax_driver_test_results/fortran_output
Flag sets: default, run_bindiff_w_flags_config_core_flags_flag1, run_bindiff_w_flags_config_core_flags_flag2, run_bindiff_w_flags_config_core_flags_flag3, run_bindiff_w_flags_config_core_flags_flag4, run_bindiff_w_flags_config_core_flags_flag5, run_bindiff_w_flags_config_core_flags_flag6, run_bindiff_w_flags_config_core_flags_flag7, run_bindiff_w_flags_config_core_flags_flag8, run_bindiff_w_flags_config_core_flags_flag9, run_bindiff_w_flags_config_core_flags_flag10, run_bindiff_w_flags_config_core_flags_flag11, run_bindiff_w_flags_config_core_flags_flag12, run_bindiff_w_flags_config_core_flags_flag13, run_bindiff_w_flags_config_core_flags_flag14, run_bindiff_w_flags_config_core_flags_flag15, run_bindiff_w_flags_config_core_flags_flag16, run_bindiff_w_flags_config_core_flags_flag17, run_bindiff_w_flags_config_core_flags_flag18
Stats: input/stats/standard_stats.in
Debug: 0
JAX accelerator: cpu
Sending interrupt signal to process
[match ] default arm jax=71.0s f90=0.7s total=73.8s
[match ] default dycoms2_rf01_fixed_sst jax=72.0s f90=0.6s total=74.6s
[match ] default fire jax=72.2s f90=0.6s total=74.8s
[match ] default atex jax=72.0s f90=0.8s total=74.9s
[match ] default dycoms2_rf01 jax=72.4s f90=0.9s total=75.6s
[match ] default bomex jax=73.0s f90=0.6s total=75.7s
[match ] default dycoms2_rf02_nd jax=74.0s f90=0.6s total=76.8s
[diff ] default cobra jax=76.9s f90=0.8s total=79.2s
Terminated
script returned exit code 143
