Started by an SCM change Obtained jenkins_tests/clubb_cmake_test/Jenkinsfile from git https://github.com/larson-group/clubb.git [Pipeline] Start of Pipeline [Pipeline] node Running on Jenkins in /home/jenkins/workspace/clubb_cmake_test [Pipeline] { [Pipeline] stage [Pipeline] { (Declarative: Checkout SCM) [Pipeline] checkout The recommended git tool is: git > git rev-parse --resolve-git-dir /home/jenkins/workspace/clubb_cmake_test/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/larson-group/clubb.git # timeout=10 Fetching upstream changes from https://github.com/larson-group/clubb.git > git --version # timeout=10 > git --version # 'git version 2.34.1' > git fetch --tags --force --progress -- https://github.com/larson-group/clubb.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 4f132e2cf1bea29284b46b82a0b5006a2b23249a (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 4f132e2cf1bea29284b46b82a0b5006a2b23249a # timeout=10 Commit message: "Update JAX conversion plan for clarity and detail" > git rev-list --no-walk fb12cc1c0be895d2db030ceed981bc5121277b0e # timeout=10 [Pipeline] } [Pipeline] // stage [Pipeline] withEnv [Pipeline] { [Pipeline] stage [Pipeline] { (Compile gfortran) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -run_tests -- Compiling with double precision -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_gcc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble Running CMake configure... [0/1] Install the project... -- Install configuration: "Release" -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/libclubb_driver_lib.a -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_tuner -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/G_unit_tests -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_thread_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_standalone -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_driver_test CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core --------------------- Unused Use Imports Check: /home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/advance_clubb_core_module.F90 --------------------- WARNING: Unused names imported by 'use ..., only:' found: line 1776 : unused import 'w_tol_sqd' in subroutine 'compute_diagnostic_cache' : use constants_clubb, only: em_min, three_halves, w_tol, w_tol_sqd ---------------------------------------------------------------------------------------------------- FAIL: 1 check(s) failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types =============================================================== CLUBBStandardsCheck FAILED  THIS IS PRINTED IN ALL RED, CAPITAL LETTERS, AND USES  AN EXCLAMATION MARK TO ENSURE THE DEVELOPERS FEEL SHAME!  IF YOU ARE ONE OF THESE "DEVELOPERS" CHECK THE  LOG FILE FOR DETAILS: /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble/cmake_build_output.txt =============================================================== Build completed successfully, but some source code checks have failed. Running CMake ctests Test project /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble Start 1: _init_output_dir 1/11 Test #1: _init_output_dir ................. Passed 0.03 sec Start 2: bomex_100iter 2/11 Test #2: bomex_100iter .................... Passed 0.57 sec Start 3: wangara_100iter 3/11 Test #3: wangara_100iter .................. Passed 0.56 sec Start 4: fire_100iter 4/11 Test #4: fire_100iter ..................... Passed 0.54 sec Start 5: atex_100iter 5/11 Test #5: atex_100iter ..................... Passed 0.77 sec Start 6: rico_silhs_100iter 6/11 Test #6: rico_silhs_100iter ............... Passed 0.67 sec Start 7: arm_97_50iter 7/11 Test #7: arm_97_50iter .................... Passed 0.90 sec Start 8: cobra_100iter 8/11 Test #8: cobra_100iter .................... Passed 0.62 sec Start 9: arm_r8029_100iter 9/11 Test #9: arm_r8029_100iter ................ Passed 0.71 sec Start 10: arm_100iter_8col 10/11 Test #10: arm_100iter_8col ................. Passed 1.12 sec Start 11: arm_1000iter_5dt 11/11 Test #11: arm_1000iter_5dt ................. Passed 1.22 sec 100% tests passed, 0 tests failed out of 11 Total Test time (real) = 7.71 sec All tests passed. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile gfortran: openmp+debug) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load gcc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Lmod Warning: ------------------------------------------------------------------------------- The following dependent module(s) are not currently loaded: gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv, netcdf-c/4.9.2, netcdf-fortran/4.5.3) ------------------------------------------------------------------------------- Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -debug -openmp -run_tests -- Compiling with double precision -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include -- OpenMP Fortran support found -- Flags: -fopenmp -- Includes: -- Libraries:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/lib64/libgomp.so;/lib/x86_64-linux-gnu/libpthread.a -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_gcc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble Running CMake configure... [0/1] Install the project... -- Install configuration: "Debug" -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/libclubb_driver_lib.a -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_tuner -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/G_unit_tests -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_thread_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_standalone -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_driver_test CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core --------------------- Unused Use Imports Check: /home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/advance_clubb_core_module.F90 --------------------- WARNING: Unused names imported by 'use ..., only:' found: line 1776 : unused import 'w_tol_sqd' in subroutine 'compute_diagnostic_cache' : use constants_clubb, only: em_min, three_halves, w_tol, w_tol_sqd ---------------------------------------------------------------------------------------------------- FAIL: 1 check(s) failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types =============================================================== CLUBBStandardsCheck FAILED  THIS IS PRINTED IN ALL RED, CAPITAL LETTERS, AND USES  AN EXCLAMATION MARK TO ENSURE THE DEVELOPERS FEEL SHAME!  IF YOU ARE ONE OF THESE "DEVELOPERS" CHECK THE  LOG FILE FOR DETAILS: /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble/cmake_build_output.txt =============================================================== Build completed successfully, but some source code checks have failed. Running CMake ctests Test project /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble Start 1: _init_output_dir 1/11 Test #1: _init_output_dir ................. Passed 0.04 sec Start 2: bomex_100iter 2/11 Test #2: bomex_100iter .................... Passed 1.05 sec Start 3: wangara_100iter 3/11 Test #3: wangara_100iter .................. Passed 0.94 sec Start 4: fire_100iter 4/11 Test #4: fire_100iter ..................... Passed 0.96 sec Start 5: atex_100iter 5/11 Test #5: atex_100iter ..................... Passed 1.46 sec Start 6: rico_silhs_100iter 6/11 Test #6: rico_silhs_100iter ............... Passed 1.28 sec Start 7: arm_97_50iter 7/11 Test #7: arm_97_50iter .................... Passed 1.79 sec Start 8: cobra_100iter 8/11 Test #8: cobra_100iter .................... Passed 1.24 sec Start 9: arm_r8029_100iter 9/11 Test #9: arm_r8029_100iter ................ Passed 1.30 sec Start 10: arm_100iter_8col 10/11 Test #10: arm_100iter_8col ................. Passed 2.48 sec Start 11: arm_1000iter_5dt 11/11 Test #11: arm_1000iter_5dt ................. Passed 3.79 sec 100% tests passed, 0 tests failed out of 11 Total Test time (real) = 16.34 sec All tests passed. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile ifx) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load intel netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -run_tests -- Compiling with double precision -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/include -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_intel.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECdouble Running CMake configure... [0/1] Install the project... -- Install configuration: "Release" -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/libclubb_driver_lib.a -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_tuner -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/G_unit_tests -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_thread_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_standalone -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_driver_test CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core --------------------- Unused Use Imports Check: /home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/advance_clubb_core_module.F90 --------------------- WARNING: Unused names imported by 'use ..., only:' found: line 1776 : unused import 'w_tol_sqd' in subroutine 'compute_diagnostic_cache' : use constants_clubb, only: em_min, three_halves, w_tol, w_tol_sqd ---------------------------------------------------------------------------------------------------- FAIL: 1 check(s) failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types =============================================================== CLUBBStandardsCheck FAILED  THIS IS PRINTED IN ALL RED, CAPITAL LETTERS, AND USES  AN EXCLAMATION MARK TO ENSURE THE DEVELOPERS FEEL SHAME!  IF YOU ARE ONE OF THESE "DEVELOPERS" CHECK THE  LOG FILE FOR DETAILS: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECdouble/cmake_build_output.txt =============================================================== Build completed successfully, but some source code checks have failed. Running CMake ctests Test project /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECdouble Start 1: _init_output_dir 1/11 Test #1: _init_output_dir ................. Passed 0.06 sec Start 2: bomex_100iter 2/11 Test #2: bomex_100iter .................... Passed 0.92 sec Start 3: wangara_100iter 3/11 Test #3: wangara_100iter .................. Passed 0.85 sec Start 4: fire_100iter 4/11 Test #4: fire_100iter ..................... Passed 0.86 sec Start 5: atex_100iter 5/11 Test #5: atex_100iter ..................... Passed 1.12 sec Start 6: rico_silhs_100iter 6/11 Test #6: rico_silhs_100iter ............... Passed 1.13 sec Start 7: arm_97_50iter 7/11 Test #7: arm_97_50iter .................... Passed 1.29 sec Start 8: cobra_100iter 8/11 Test #8: cobra_100iter .................... Passed 1.03 sec Start 9: arm_r8029_100iter 9/11 Test #9: arm_r8029_100iter ................ Passed 1.03 sec Start 10: arm_100iter_8col 10/11 Test #10: arm_100iter_8col ................. Passed 0.64 sec Start 11: arm_1000iter_5dt 11/11 Test #11: arm_1000iter_5dt ................. Passed 1.98 sec 100% tests passed, 0 tests failed out of 11 Total Test time (real) = 10.92 sec All tests passed. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile ifx: single precision) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load intel netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -precision single -run_tests -- Compiling with single precision -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/oneapi-2023.2.0/netcdf-fortran-4.5.3-dse32dm7kmsorqtyicefw5hz4kl24mhf/include -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_intel.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle Running CMake configure... [0/1] Install the project... -- Install configuration: "Release" -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/libclubb_driver_lib.a -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_tuner -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/G_unit_tests -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_thread_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_standalone -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECsingle/clubb_driver_test CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core --------------------- Unused Use Imports Check: /home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/advance_clubb_core_module.F90 --------------------- WARNING: Unused names imported by 'use ..., only:' found: line 1776 : unused import 'w_tol_sqd' in subroutine 'compute_diagnostic_cache' : use constants_clubb, only: em_min, three_halves, w_tol, w_tol_sqd ---------------------------------------------------------------------------------------------------- FAIL: 1 check(s) failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types =============================================================== CLUBBStandardsCheck FAILED  THIS IS PRINTED IN ALL RED, CAPITAL LETTERS, AND USES  AN EXCLAMATION MARK TO ENSURE THE DEVELOPERS FEEL SHAME!  IF YOU ARE ONE OF THESE "DEVELOPERS" CHECK THE  LOG FILE FOR DETAILS: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle/cmake_build_output.txt =============================================================== Build completed successfully, but some source code checks have failed. Running CMake ctests Test project /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECsingle Start 1: _init_output_dir 1/11 Test #1: _init_output_dir ................. Passed 0.06 sec Start 2: bomex_100iter 2/11 Test #2: bomex_100iter .................... Passed 0.90 sec Start 3: wangara_100iter 3/11 Test #3: wangara_100iter .................. Passed 0.88 sec Start 4: fire_100iter 4/11 Test #4: fire_100iter ..................... Passed 0.91 sec Start 5: atex_100iter 5/11 Test #5: atex_100iter ..................... Passed 1.19 sec Start 6: rico_silhs_100iter 6/11 Test #6: rico_silhs_100iter ............... Passed 1.15 sec Start 7: arm_97_50iter 7/11 Test #7: arm_97_50iter .................... Passed 1.26 sec Start 8: cobra_100iter 8/11 Test #8: cobra_100iter .................... Passed 1.02 sec Start 9: arm_r8029_100iter 9/11 Test #9: arm_r8029_100iter ................ Passed 1.07 sec Start 10: arm_100iter_8col 10/11 Test #10: arm_100iter_8col ................. Passed 0.56 sec Start 11: arm_1000iter_5dt 11/11 Test #11: arm_1000iter_5dt ................. Passed 2.14 sec 100% tests passed, 0 tests failed out of 11 Total Test time (real) = 11.15 sec All tests passed. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile nvfortran) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -run_tests -- Configuring for CPU build -- Compiling with double precision -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/nvhpc-24.3/netcdf-fortran-4.5.3-sl35xhk3ea5mtoylsgjg62d2bg3zto3k/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/nvhpc-24.3/netcdf-fortran-4.5.3-sl35xhk3ea5mtoylsgjg62d2bg3zto3k/include -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_nvhpc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_PRECdouble Running CMake configure... [0/1] Install the project... -- Install configuration: "Release" -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble/libclubb_driver_lib.a -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble/clubb_tuner -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble/G_unit_tests -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble/clubb_thread_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble/clubb_standalone -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_PRECdouble/clubb_driver_test CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core --------------------- Unused Use Imports Check: /home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/advance_clubb_core_module.F90 --------------------- WARNING: Unused names imported by 'use ..., only:' found: line 1776 : unused import 'w_tol_sqd' in subroutine 'compute_diagnostic_cache' : use constants_clubb, only: em_min, three_halves, w_tol, w_tol_sqd ---------------------------------------------------------------------------------------------------- FAIL: 1 check(s) failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types =============================================================== CLUBBStandardsCheck FAILED  THIS IS PRINTED IN ALL RED, CAPITAL LETTERS, AND USES  AN EXCLAMATION MARK TO ENSURE THE DEVELOPERS FEEL SHAME!  IF YOU ARE ONE OF THESE "DEVELOPERS" CHECK THE  LOG FILE FOR DETAILS: /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_PRECdouble/cmake_build_output.txt =============================================================== Build completed successfully, but some source code checks have failed. Running CMake ctests Test project /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_PRECdouble Start 1: _init_output_dir 1/11 Test #1: _init_output_dir ................. Passed 0.06 sec Start 2: bomex_100iter 2/11 Test #2: bomex_100iter .................... Passed 1.21 sec Start 3: wangara_100iter 3/11 Test #3: wangara_100iter .................. Passed 1.13 sec Start 4: fire_100iter 4/11 Test #4: fire_100iter ..................... Passed 1.14 sec Start 5: atex_100iter 5/11 Test #5: atex_100iter ..................... Passed 1.65 sec Start 6: rico_silhs_100iter 6/11 Test #6: rico_silhs_100iter ............... Passed 1.54 sec Start 7: arm_97_50iter 7/11 Test #7: arm_97_50iter .................... Passed 1.94 sec Start 8: cobra_100iter 8/11 Test #8: cobra_100iter .................... Passed 1.41 sec Start 9: arm_r8029_100iter 9/11 Test #9: arm_r8029_100iter ................ Passed 1.52 sec Start 10: arm_100iter_8col 10/11 Test #10: arm_100iter_8col ................. Passed 0.73 sec Start 11: arm_1000iter_5dt 11/11 Test #11: arm_1000iter_5dt ................. Passed 2.86 sec 100% tests passed, 0 tests failed out of 11 Total Test time (real) = 15.21 sec All tests passed. [Pipeline] } [Pipeline] // stage [Pipeline] stage [Pipeline] { (Compile nvfortran: openacc) [Pipeline] sh + source /etc/profile.d/larson-group.sh ++ export GIT_EDITOR=vi ++ GIT_EDITOR=vi ++ export SVN_EDITOR=vi ++ SVN_EDITOR=vi ++ export OMP_STACKSIZE=1048579 ++ OMP_STACKSIZE=1048579 ++ export LMOD_ROOT=/opt/lmod/ ++ LMOD_ROOT=/opt/lmod/ ++ source /opt/lmod//lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx +++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit ++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core ++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core + module load nvhpc netcdf-fortran + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + ./compile.py -gpu openacc -run_tests -- Configuring for OpenACC GPU build -- Compiling with double precision -- SUCCESS: netcdf-fortran found. -- -> Library : /usr/local/spack/opt/spack/linux-pop22-cascadelake/nvhpc-24.3/netcdf-fortran-4.5.3-sl35xhk3ea5mtoylsgjg62d2bg3zto3k/lib/libnetcdff.so -- -> Modules : /usr/local/spack/opt/spack/linux-pop22-cascadelake/nvhpc-24.3/netcdf-fortran-4.5.3-sl35xhk3ea5mtoylsgjg62d2bg3zto3k/include -- Configuring done -- Generating done -- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_GPUopenacc_PRECdouble Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_nvhpc.cmake Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_GPUopenacc_PRECdouble Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_GPUopenacc_PRECdouble Running CMake configure... [0/1] Install the project... -- Install configuration: "Release" -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble/libclubb_driver_lib.a -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble/clubb_tuner -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble/G_unit_tests -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble/clubb_thread_test -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble/clubb_standalone -- Up-to-date: /home/jenkins/workspace/clubb_cmake_test/install/nvhpc_GPUopenacc_PRECdouble/clubb_driver_test CLUBBStandardsCheck.py: beginning check on src PASS: 0 checks failed for src CLUBBStandardsCheck.py: beginning check on src/CLUBB_core --------------------- Unused Use Imports Check: /home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/advance_clubb_core_module.F90 --------------------- WARNING: Unused names imported by 'use ..., only:' found: line 1776 : unused import 'w_tol_sqd' in subroutine 'compute_diagnostic_cache' : use constants_clubb, only: em_min, three_halves, w_tol, w_tol_sqd ---------------------------------------------------------------------------------------------------- FAIL: 1 check(s) failed for src/CLUBB_core CLUBBStandardsCheck.py: beginning check on src/SILHS PASS: 0 checks failed for src/SILHS CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases PASS: 0 checks failed for src/Benchmark_cases CLUBBStandardsCheck.py: beginning check on src/Radiation PASS: 0 checks failed for src/Radiation CLUBBStandardsCheck.py: beginning check on src/Microphys PASS: 0 checks failed for src/Microphys CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys PASS: 0 checks failed for src/Microphys/KK_microphys CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types PASS: 0 checks failed for src/G_unit_test_types =============================================================== CLUBBStandardsCheck FAILED  THIS IS PRINTED IN ALL RED, CAPITAL LETTERS, AND USES  AN EXCLAMATION MARK TO ENSURE THE DEVELOPERS FEEL SHAME!  IF YOU ARE ONE OF THESE "DEVELOPERS" CHECK THE  LOG FILE FOR DETAILS: /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_GPUopenacc_PRECdouble/cmake_build_output.txt =============================================================== Build completed successfully, but some source code checks have failed. Running CMake ctests Test project /home/jenkins/workspace/clubb_cmake_test/build/nvhpc_GPUopenacc_PRECdouble Start 1: _init_output_dir 1/11 Test #1: _init_output_dir ................. Passed 0.06 sec Start 2: bomex_100iter 2/11 Test #2: bomex_100iter .................... Passed 11.54 sec Start 3: wangara_100iter 3/11 Test #3: wangara_100iter .................. Passed 11.34 sec Start 4: fire_100iter 4/11 Test #4: fire_100iter ..................... Passed 11.08 sec Start 5: atex_100iter 5/11 Test #5: atex_100iter ..................... Passed 12.22 sec Start 6: rico_silhs_100iter 6/11 Test #6: rico_silhs_100iter ............... Passed 17.53 sec Start 7: arm_97_50iter 7/11 Test #7: arm_97_50iter .................... Passed 25.89 sec Start 8: cobra_100iter 8/11 Test #8: cobra_100iter .................... Passed 13.59 sec Start 9: arm_r8029_100iter 9/11 Test #9: arm_r8029_100iter ................ Passed 11.60 sec Start 10: arm_100iter_8col 10/11 Test #10: arm_100iter_8col ................. Passed 9.82 sec Start 11: arm_1000iter_5dt 11/11 Test #11: arm_1000iter_5dt ................. Passed 91.31 sec 100% tests passed, 0 tests failed out of 11 Total Test time (real) = 215.99 sec All tests passed. [Pipeline] } [Pipeline] // stage [Pipeline] } [Pipeline] // withEnv [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS