Console Output

+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ./compile.py -run_tests
-- Compiling with double precision
-- netcdf-fortran found via pkg-config
-- Include dirs: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include;/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-c-4.9.2-vfbwjy5rcwhozcnzui7joyfxgxpytu5a/include
-- Libraries:    netcdff
-- Derived NetCDFFortran_ROOT = /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_gcc.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble
about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble
Running CMake configure...
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[516/723] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/err_info_type_module.F90.o
[517/723] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/model_flags.F90.o
[518/723] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diagnose_correlations_module.F90.o
[519/723] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_operations.F90.o
[520/723] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/interpolation.F90.o
[521/723] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/penta_bicgstab_solver.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/penta_bicgstab_solver.F90:140:10:

  140 |       if ( norm_rhs == 0.0) then
      |          1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
[522/723] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/corr_varnce_module.F90.o
[523/722] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/adg1_adg2_3d_luhar_pdf.F90.o
[524/722] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/lapack_wrap.F90.o
[525/722] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_class.F90.o
[526/719] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/matrix_solver_wrapper.F90.o
[527/719] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sponge_layer_damping.F90.o
[528/719] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/diffusion.F90.o
[529/719] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pos_definite_module.F90.o
[530/719] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_helper_module.F90.o
[531/719] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_utilities.F90.o
[532/719] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/remapping_module.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/remapping_module.F90:1210:43:

 1210 |             if(f(i,k+1)*f(i,k-1)<zero .and. df2(i,k)/=zero) then
      |                                           1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/remapping_module.F90:1104:15:

 1104 |             if(dm(i) == zero) then
      |               1
Warning: Equality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/remapping_module.F90:185:71:

  185 |                               *( val_below + lin_spline_rho_vals(l) )/2
      |                                                                       ^
Warning: 'level_below' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/remapping_module.F90:129:17:

  129 |       level_below, &        ! The altitude of the level or spline connection point below   [m]
      |                 ^
note: 'level_below' was declared here
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/remapping_module.F90:185:71:

  185 |                               *( val_below + lin_spline_rho_vals(l) )/2
      |                                                                       ^
Warning: 'val_below' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/remapping_module.F90:128:15:

  128 |       val_below, &          ! The rho value of the level or spline connection point below  [kg/m^3]
      |               ^
note: 'val_below' was declared here
[533/719] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_parameter_module.F90.o
[534/717] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/parameters_tunable.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/parameters_tunable.F90:438:46:

  438 |       write(fstderr, *) err_info%err_header(i)
      |                                              ^
Warning: 'i' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/parameters_tunable.F90:407:19:

  407 |     integer :: k, i    ! loop variable
      |                   ^
note: 'i' was declared here
[535/717] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_netcdf.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/stats_netcdf.F90:2561:73:

 2561 |     character(len=REG_LINE_LEN) , dimension(NML_REG_MAX_ENTRIES) :: entry
      |                                                                         1
Warning: Array 'entry' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
[536/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clip_explicit.F90.o
[537/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/precipitation_fraction.F90.o
[538/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mono_flux_limiter.F90.o
[539/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/grid_adaptation_module.F90.o
[540/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/numerical_check.F90.o
[541/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/fill_holes.F90.o
[542/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sfc_varnce_module.F90.o
[543/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_clubb_utilities.F90.o
[544/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_windm_edsclrm_module.F90.o
[545/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mixing_length.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/mixing_length.F90:637:16:

  637 |             if ( abs( dCAPE_dz_j - dCAPE_dz_j_minus_1 ) * 2 <= &
      |                ^
Warning: 'dcape_dz_j' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/mixing_length.F90:271:42:

  271 |     real( kind = core_rknd ) :: dCAPE_dz_j, dCAPE_dz_j_minus_1, dCAPE_dz_j_plus_1
      |                                          ^
note: 'dcape_dz_j' was declared here
[546/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/setup_clubb_pdf_params.F90.o
[547/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_wp2_wp3_module.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/advance_wp2_wp3_module.F90:1869:12:

 1869 |         if ( abs(wp2_avg_before - wp2_avg_after) > epsilon(wp2_avg_after)*1000 ) then
      |            ^
Warning: 'wp2_avg_before' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/advance_wp2_wp3_module.F90:1419:20:

 1419 |       wp2_avg_before, &
      |                    ^
note: 'wp2_avg_before' was declared here
[548/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp2_xpyp_module.F90.o
[549/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xm_wpxp_module.F90.o
[550/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_closure_module.F90.o
[551/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_clubb_core_module.F90.o
[552/716] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_api_module.F90.o
[553/716] Linking Fortran static library src/CLUBB_core/libclubb_core_lib.a
[554/716] Generating Fortran dyndep file src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/Fortran.dd
[555/716] Generating Fortran dyndep file src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/Fortran.dd
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[557/716] Generating Fortran dyndep file src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/Fortran.dd
[558/716] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/kinds.F90.o
[559/716] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/parameters_KK.F90.o
[560/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa15.F.o
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[569/716] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugsrad_physconst.F90.o
[570/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa19.F.o
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[575/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/adjmlt.F.o
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[577/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa27.F.o
[578/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa27r.F.o
[579/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa18.F.o
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[581/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa22g.F.o
[582/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa26.F.o
[583/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa28.F.o
[584/716] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/rayle.F.o
[585/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa12.F.o
[586/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa5g.F.o
[587/716] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugsrad_planck.F90.o
[588/716] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/comscp2.F.o
[589/716] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/newexp.F90.o
[590/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa6.F.o
[591/716] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/comscp1.F.o
[592/716] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/two_rt_lw_sel.F.o
[593/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa7.F.o
[594/716] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_local_means.F90.o
[595/716] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/cloudg.F.o
[596/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esatv.F.o
[597/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/eqa7g.F.o
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[604/716] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/gascon.F.o
[605/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqg.F.o
[606/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/esat_new.F.o
[607/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/nrmtqw.F.o
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[613/716] Building Fortran object src/Microphys/COAMPS_microphys/CMakeFiles/coamps_lib.dir/tgqi.F.o
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[629/716] Building Fortran object src/Radiation/BUGSrad/CMakeFiles/bugsrad_lib.dir/bugs_lwr.F.o
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[631/716] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/Parabolic.f90.o
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[633/716] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_utilities.F90.o
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[641/716] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_turbulent_sed.F90.o
[642/716] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_covariances.F90.o
[643/716] Linking Fortran static library src/Microphys/KK_microphys/libKK_microphys_lib.a
[644/716] Generating Fortran dyndep file src/SILHS/CMakeFiles/silhs_lib.dir/Fortran.dd
[645/718] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_arrays.F90.o
[646/717] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_importance_sample_module.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/SILHS/silhs_importance_sample_module.F90:638:62:

  633 |       do category=1, num_importance_categories
      |                                              2                
......
  638 |                rand_vect(sample) <  category_cumulative_probs(category+1) ) then
      |                                                              1
Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript]
[647/717] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o
[648/717] Linking Fortran static library src/Microphys/Morrison_microphys/libmorrison_microphys_lib.a
[649/717] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_driver_module.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/SILHS/latin_hypercube_driver_module.F90:1596:10:

 1596 |       if ( X_u_chi(sample) < (one - cloud_frac_i) ) then
      |          ^
Warning: 'cloud_frac_i' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_cmake_test/src/SILHS/latin_hypercube_driver_module.F90:1578:18:

 1578 |       cloud_frac_i
      |                  ^
note: 'cloud_frac_i' was declared here
[650/717] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_api_module.F90.o
[651/717] Linking Fortran static library src/SILHS/libsilhs_lib.a
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/home/jenkins/workspace/clubb_cmake_test/src/Input_fields/sounding.F90:156:13:

  156 |       p_in_Pa, & ! Pressure                               [Pa]
      |             1
Warning: Array 'p_in_pa' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_cmake_test/src/Input_fields/sounding.F90:151:8:

  151 |       rt,      & ! Total water mixing ratio sounding      [kg/kg]
      |        1
Warning: Array 'rt' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_cmake_test/src/Input_fields/sounding.F90:157:10:

  157 |       subs       ! Vertical velocity sounding             [m/s or Pa/s]
      |          1
Warning: Array 'subs' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_cmake_test/src/Input_fields/sounding.F90:150:11:

  150 |       theta,   & ! Liquid potential temperature sounding  [K]
      |           1
Warning: Array 'theta' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_cmake_test/src/Input_fields/sounding.F90:152:7:

  152 |       u,       & ! u wind sounding                        [m/s]
      |       1
Warning: Array 'u' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_cmake_test/src/Input_fields/sounding.F90:154:8:

  154 |       ug,      & ! u geostrophic wind sounding            [m/s]
      |        1
Warning: Array 'ug' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_cmake_test/src/Input_fields/sounding.F90:153:7:

  153 |       v,       & ! v wind sounding                        [m/s]
      |       1
Warning: Array 'v' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_cmake_test/src/Input_fields/sounding.F90:155:8:

  155 |       vg,      & ! v geostrophic wind sounding            [m/s]
      |        1
Warning: Array 'vg' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
/home/jenkins/workspace/clubb_cmake_test/src/Input_fields/sounding.F90:149:7:

  149 |       z,       & ! Altitude                               [m]
      |       1
Warning: Array 'z' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
[667/718] Linking Fortran static library src/Input_fields/libinput_fields_lib.a
[668/718] Generating Fortran dyndep file src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/Fortran.dd
[669/718] Generating Fortran dyndep file src/Microphys/CMakeFiles/microphys_lib.dir/Fortran.dd
[670/719] Generating Fortran dyndep file src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/Fortran.dd
[671/737] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/parameters_microphys.F90.o
[672/737] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/read_corr_mtx_test.F90.o
[673/737] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/wangara.F90.o
[674/737] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o
[675/737] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/gfdl_activation.F90.o
[676/737] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/tuner_tests.F90.o
[677/737] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/fill_holes_tests.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/G_unit_test_types/fill_holes_tests.F90:407:27:

  407 |                  .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
      |                           1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/G_unit_test_types/fill_holes_tests.F90:406:22:

  406 |             if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &
      |                      1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/G_unit_test_types/fill_holes_tests.F90:462:22:

  462 |             if ( any( field_rev_rev /= field ) ) then
      |                      1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/G_unit_test_types/fill_holes_tests.F90:221:27:

  221 |                  .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
      |                           1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/G_unit_test_types/fill_holes_tests.F90:220:22:

  220 |             if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &
      |                      1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/G_unit_test_types/fill_holes_tests.F90:275:22:

  275 |             if ( any( field_rev_rev /= field ) ) then
      |                      1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
[678/737] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o
[679/737] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/time_dependent_input.F90.o
[680/720] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/neutral_case.F90.o
[681/720] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/ekman.F90.o
[682/720] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf01.F90.o
[683/720] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/lba.F90.o
[684/720] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/bomex.F90.o
[685/720] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_b.F90.o
[686/720] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/dycoms2_rf02.F90.o
[687/720] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o
[688/720] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/rico.F90.o
[689/720] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/gabls2.F90.o
[690/720] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o
[691/720] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/mpace_a.F90.o
[692/720] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/atex.F90.o
[693/720] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o
[694/720] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o
[695/720] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o
[696/720] Linking Fortran static library src/Benchmark_cases/libbenchmark_cases_lib.a
[697/720] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o
[698/720] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o
[699/720] Linking Fortran static library src/G_unit_test_types/libG_unit_test_lib.a
[700/721] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o
[701/721] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o
[702/721] Linking Fortran executable src/G_unit_tests
[703/721] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o
[704/721] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o
[705/721] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o
[706/721] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o
[707/721] Linking Fortran static library src/Microphys/libmicrophys_lib.a
[708/721] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_lib.dir/Fortran.dd
[709/721] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o
[710/721] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o
[711/721] Linking Fortran static library src/libclubb_driver_lib.a
[712/723] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_test.dir/Fortran.dd
[713/723] Generating Fortran dyndep file src/CMakeFiles/clubb_tuner.dir/Fortran.dd
[714/723] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o
[715/723] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o
[716/723] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o
[717/723] Linking Fortran executable src/clubb_thread_test
[718/723] Linking Fortran executable src/clubb_driver_test
[719/723] Linking Fortran executable src/clubb_standalone
[720/723] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o
[721/723] Building Fortran object src/CMakeFiles/clubb_tuner.dir/clubb_tuner.F90.o
[722/723] Linking Fortran executable src/clubb_tuner
[722/723] Install the project...
-- Install configuration: "Release"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_tuner
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_tuner" to "/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/G_unit_tests
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/G_unit_tests" to "/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_thread_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_thread_test" to "/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_standalone
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_standalone" to "/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_driver_test" to "/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types

Build completed successfully, and all source code checks passed.

Running CMake ctests
Test project /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble
      Start  1: _init_output_dir
 1/11 Test  #1: _init_output_dir .................   Passed    0.07 sec
      Start  2: bomex_100iter
 2/11 Test  #2: bomex_100iter ....................   Passed    0.71 sec
      Start  3: wangara_100iter
 3/11 Test  #3: wangara_100iter ..................   Passed    0.55 sec
      Start  4: fire_100iter
 4/11 Test  #4: fire_100iter .....................   Passed    0.63 sec
      Start  5: atex_100iter
 5/11 Test  #5: atex_100iter .....................   Passed    0.92 sec
      Start  6: rico_silhs_100iter
 6/11 Test  #6: rico_silhs_100iter ...............   Passed    0.69 sec
      Start  7: arm_97_50iter
 7/11 Test  #7: arm_97_50iter ....................   Passed    0.88 sec
      Start  8: cobra_100iter
 8/11 Test  #8: cobra_100iter ....................   Passed    0.69 sec
      Start  9: arm_r8029_100iter
 9/11 Test  #9: arm_r8029_100iter ................   Passed    0.77 sec
      Start 10: arm_100iter_8col
10/11 Test #10: arm_100iter_8col .................   Passed    1.11 sec
      Start 11: arm_1000iter_5dt
11/11 Test #11: arm_1000iter_5dt .................   Passed    1.32 sec

100% tests passed, 0 tests failed out of 11

Total Test time (real) =   8.35 sec
All tests passed.