Console Output

+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/lmod-8.7.37-bi3kyxcdrfgw3y7vv2k7c5rjxg75qzju/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-gzedt3f (required by: mpich/4.2.1, hdf5/1.14.3-42x3zrv,
netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------



Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ./compile.py -debug -openmp -run_tests
-- Compiling with double precision
-- netcdf-fortran found via pkg-config
-- Include dirs: /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/include;/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-c-4.9.2-vfbwjy5rcwhozcnzui7joyfxgxpytu5a/include
-- Libraries:    netcdff
-- Derived NetCDFFortran_ROOT = /usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir
-- OpenMP Fortran support found
-- Flags:    -fopenmp
-- Includes: 
-- Libraries:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-12.2.0/gcc-13.1.0-uswx4gd4eee2bf3orriqppfr4j25x4li/lib64/libgomp.so;/lib/x86_64-linux-gnu/libpthread.a
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_gcc.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble
about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble
Running CMake configure...
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/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/penta_bicgstab_solver.F90:140:10:

  140 |       if ( norm_rhs == 0.0) then
      |          1
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/home/jenkins/workspace/clubb_cmake_test/src/SILHS/silhs_importance_sample_module.F90:638:62:

  633 |       do category=1, num_importance_categories
      |                                              2                
......
  638 |                rand_vect(sample) <  category_cumulative_probs(category+1) ) then
      |                                                              1
Warning: Array reference at (1) out of bounds (9 > 8) in loop beginning at (2) [-Wdo-subscript]
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/home/jenkins/workspace/clubb_cmake_test/src/G_unit_test_types/fill_holes_tests.F90:407:27:

  407 |                  .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
      |                           1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/G_unit_test_types/fill_holes_tests.F90:406:22:

  406 |             if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &
      |                      1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/G_unit_test_types/fill_holes_tests.F90:462:22:

  462 |             if ( any( field_rev_rev /= field ) ) then
      |                      1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/G_unit_test_types/fill_holes_tests.F90:221:27:

  221 |                  .or. any( field(:,upper_hf_level:nz) /= field(:,upper_hf_level:nz) ) ) then
      |                           1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/G_unit_test_types/fill_holes_tests.F90:220:22:

  220 |             if ( any( field(:,1:lower_hf_level) /= field(:,1:lower_hf_level) ) &
      |                      1
Warning: Inequality comparison for REAL(8) at (1) [-Wcompare-reals]
/home/jenkins/workspace/clubb_cmake_test/src/G_unit_test_types/fill_holes_tests.F90:275:22:

  275 |             if ( any( field_rev_rev /= field ) ) then
      |                      1
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[696/722] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/pdf_parameter_tests.F90.o
[697/722] Linking Fortran static library src/G_unit_test_types/libG_unit_test_lib.a
[698/723] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o
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[703/723] Linking Fortran executable src/G_unit_tests
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[710/723] Generating Fortran dyndep file src/CMakeFiles/clubb_driver_lib.dir/Fortran.dd
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[715/725] Generating Fortran dyndep file src/CMakeFiles/clubb_tuner.dir/Fortran.dd
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[717/725] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o
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[721/725] Linking Fortran executable src/clubb_standalone
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[724/725] Install the project...
-- Install configuration: "Debug"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_tuner
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_tuner" to "/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/G_unit_tests
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/G_unit_tests" to "/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_thread_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_thread_test" to "/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_standalone
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_standalone" to "/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_DEBUG_PRECdouble/clubb_driver_test" to "/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir:/usr/local/spack/opt/spack/linux-pop22-cascadelake/gcc-13.1.0/netcdf-fortran-4.5.3-ivafocv4fav4rj3ckswo6vj33utvtdir/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types

Build completed successfully, and all source code checks passed.

Running CMake ctests
Test project /home/jenkins/workspace/clubb_cmake_test/build/gcc_DEBUG_PRECdouble
      Start  1: _init_output_dir
 1/11 Test  #1: _init_output_dir .................   Passed    0.05 sec
      Start  2: bomex_100iter
 2/11 Test  #2: bomex_100iter ....................   Passed    1.13 sec
      Start  3: wangara_100iter
 3/11 Test  #3: wangara_100iter ..................   Passed    0.93 sec
      Start  4: fire_100iter
 4/11 Test  #4: fire_100iter .....................   Passed    1.03 sec
      Start  5: atex_100iter
 5/11 Test  #5: atex_100iter .....................   Passed    1.53 sec
      Start  6: rico_silhs_100iter
 6/11 Test  #6: rico_silhs_100iter ...............   Passed    1.42 sec
      Start  7: arm_97_50iter
 7/11 Test  #7: arm_97_50iter ....................   Passed    1.87 sec
      Start  8: cobra_100iter
 8/11 Test  #8: cobra_100iter ....................   Passed    1.33 sec
      Start  9: arm_r8029_100iter
 9/11 Test  #9: arm_r8029_100iter ................   Passed    1.31 sec
      Start 10: arm_100iter_8col
10/11 Test #10: arm_100iter_8col .................   Passed    2.49 sec
      Start 11: arm_1000iter_5dt
11/11 Test #11: arm_1000iter_5dt .................   Passed    3.97 sec

100% tests passed, 0 tests failed out of 11

Total Test time (real) =  17.09 sec
All tests passed.