Console Output
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load intel netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ./compile.py -run_tests
-- Compiling with double precision
-- netcdf-fortran found via pkg-config
-- Include dirs: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-vnle5nytdsohpf3fkn6waiuu5mcv5t6g/include;/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-c-4.9.2-mrmfc7travjahj5qigj26qtr5jqutebk/include
-- Libraries: netcdff
-- Derived NetCDFFortran_ROOT = /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-vnle5nytdsohpf3fkn6waiuu5mcv5t6g
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_intel.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble
about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECdouble
Running CMake configure...
Scanning dependencies of target scm_activation_lib
Scanning dependencies of target clubb_lapack_shared
Scanning dependencies of target clubb_lapack_double
[ 0%] Built target clubb_lapack_shared
[ 0%] Built target scm_activation_lib
Scanning dependencies of target clubb_lapack_single
[ 19%] Built target clubb_lapack_double
[ 37%] Built target clubb_lapack_single
[ 37%] Built target lapack_lib
Scanning dependencies of target clubb_core_lib
[ 37%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_netcdf.F90.o
[ 37%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/numerical_check.F90.o
[ 37%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp3_module.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mono_flux_limiter.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clip_explicit.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/fill_holes.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_clubb_utilities.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/precipitation_fraction.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_windm_edsclrm_module.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/setup_clubb_pdf_params.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sfc_varnce_module.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_closure_module.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mixing_length.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_wp2_wp3_module.F90.o
[ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xm_wpxp_module.F90.o
[ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp2_xpyp_module.F90.o
[ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_clubb_core_module.F90.o
[ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_api_module.F90.o
[ 40%] Linking Fortran static library libclubb_core_lib.a
[ 52%] Built target clubb_core_lib
Scanning dependencies of target bugsrad_lib
Scanning dependencies of target text_writer_lib
Scanning dependencies of target coamps_lib
Scanning dependencies of target microphys_utils_lib
[ 64%] Built target coamps_lib
[ 64%] Built target text_writer_lib
[ 64%] Building Fortran object src/Microphys/Microphys_utils/CMakeFiles/microphys_utils_lib.dir/microphys_stats_vars_module.F90.o
[ 69%] Built target bugsrad_lib
[ 69%] Linking Fortran static library libmicrophys_utils_lib.a
[ 69%] Built target microphys_utils_lib
Scanning dependencies of target morrison_microphys_lib
[ 69%] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o
Scanning dependencies of target KK_microphys_lib
[ 69%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_covariances.F90.o
[ 70%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_turbulent_sed.F90.o
[ 70%] Linking Fortran static library libKK_microphys_lib.a
[ 73%] Built target KK_microphys_lib
Scanning dependencies of target silhs_lib
[ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_driver_module.F90.o
[ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_api_module.F90.o
[ 73%] Linking Fortran static library libsilhs_lib.a
[ 76%] Built target silhs_lib
Scanning dependencies of target numerical_recipes_lib
Scanning dependencies of target radiation_lib
[ 79%] Built target numerical_recipes_lib
[ 79%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/soil_vegetation.F90.o
[ 79%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/simple_rad_module.F90.o
[ 79%] Linking Fortran static library libmorrison_microphys_lib.a
[ 79%] Built target morrison_microphys_lib
[ 80%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o
[ 80%] Linking Fortran static library libradiation_lib.a
[ 81%] Built target radiation_lib
Scanning dependencies of target input_fields_lib
[ 84%] Built target input_fields_lib
Scanning dependencies of target G_unit_test_lib
Scanning dependencies of target benchmark_cases_lib
Scanning dependencies of target microphys_lib
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o
[ 84%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o
[ 85%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o
[ 85%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/morrison_microphys_module.F90.o
[ 86%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o
[ 86%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o
[ 86%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o
[ 86%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o
[ 86%] Linking Fortran static library libbenchmark_cases_lib.a
[ 93%] Built target benchmark_cases_lib
[ 93%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o
[ 93%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o
[ 93%] Linking Fortran static library libG_unit_test_lib.a
[ 96%] Built target G_unit_test_lib
Scanning dependencies of target G_unit_tests
[ 96%] Building Fortran object src/CMakeFiles/G_unit_tests.dir/G_unit_tests.F90.o
[ 96%] Linking Fortran executable G_unit_tests
[ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o
[ 96%] Built target G_unit_tests
[ 97%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o
[ 98%] Linking Fortran static library libmicrophys_lib.a
[ 98%] Built target microphys_lib
Scanning dependencies of target clubb_driver_lib
[ 99%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o
[ 99%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o
[ 99%] Linking Fortran static library libclubb_driver_lib.a
[ 99%] Built target clubb_driver_lib
Scanning dependencies of target clubb_standalone
Scanning dependencies of target clubb_thread_test
Scanning dependencies of target clubb_tuner
Scanning dependencies of target clubb_driver_test
[ 99%] Building Fortran object src/CMakeFiles/clubb_standalone.dir/clubb_standalone.F90.o
[100%] Building Fortran object src/CMakeFiles/clubb_tuner.dir/error.F90.o
[100%] Building Fortran object src/CMakeFiles/clubb_thread_test.dir/clubb_thread_test.F90.o
[100%] Building Fortran object src/CMakeFiles/clubb_driver_test.dir/clubb_driver_test.F90.o
[100%] Linking Fortran executable clubb_standalone
[100%] Linking Fortran executable clubb_thread_test
[100%] Linking Fortran executable clubb_driver_test
[100%] Built target clubb_thread_test
[100%] Built target clubb_standalone
[100%] Built target clubb_driver_test
[100%] Linking Fortran executable clubb_tuner
[100%] Built target clubb_tuner
Install the project...
-- Install configuration: "Release"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_tuner
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_tuner" to "/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-vnle5nytdsohpf3fkn6waiuu5mcv5t6g:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-vnle5nytdsohpf3fkn6waiuu5mcv5t6g/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/G_unit_tests
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/G_unit_tests" to "/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-vnle5nytdsohpf3fkn6waiuu5mcv5t6g:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-vnle5nytdsohpf3fkn6waiuu5mcv5t6g/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_thread_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_thread_test" to "/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-vnle5nytdsohpf3fkn6waiuu5mcv5t6g:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-vnle5nytdsohpf3fkn6waiuu5mcv5t6g/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_standalone
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_standalone" to "/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-vnle5nytdsohpf3fkn6waiuu5mcv5t6g:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-vnle5nytdsohpf3fkn6waiuu5mcv5t6g/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/intel_PRECdouble/clubb_driver_test" to "/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-vnle5nytdsohpf3fkn6waiuu5mcv5t6g:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/oneapi-2023.2.0/netcdf-fortran-4.5.3-vnle5nytdsohpf3fkn6waiuu5mcv5t6g/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types
[92mBuild completed successfully, and all source code checks passed.[0m
Running CMake ctests
Test project /home/jenkins/workspace/clubb_cmake_test/build/intel_PRECdouble
Start 1: _init_output_dir
1/11 Test #1: _init_output_dir ................. Passed 0.04 sec
Start 2: bomex_100iter
2/11 Test #2: bomex_100iter .................... Passed 0.70 sec
Start 3: wangara_100iter
3/11 Test #3: wangara_100iter .................. Passed 0.66 sec
Start 4: fire_100iter
4/11 Test #4: fire_100iter ..................... Passed 0.66 sec
Start 5: atex_100iter
5/11 Test #5: atex_100iter ..................... Passed 0.88 sec
Start 6: rico_silhs_100iter
6/11 Test #6: rico_silhs_100iter ............... Passed 0.86 sec
Start 7: arm_97_50iter
7/11 Test #7: arm_97_50iter .................... Passed 1.00 sec
Start 8: cobra_100iter
8/11 Test #8: cobra_100iter .................... Passed 0.80 sec
Start 9: arm_r8029_100iter
9/11 Test #9: arm_r8029_100iter ................ Passed 0.77 sec
Start 10: arm_100iter_8col
10/11 Test #10: arm_100iter_8col ................. Passed 0.46 sec
Start 11: arm_1000iter_5dt
11/11 Test #11: arm_1000iter_5dt ................. Passed 1.50 sec
100% tests passed, 0 tests failed out of 11
Total Test time (real) = 8.34 sec
[92mAll tests passed.[0m
