Console Output
+ source /etc/profile.d/larson-group.sh
++ export GIT_EDITOR=vi
++ GIT_EDITOR=vi
++ export SVN_EDITOR=vi
++ SVN_EDITOR=vi
++ export OMP_STACKSIZE=1048579
++ OMP_STACKSIZE=1048579
++ export LMOD_ROOT=/opt/lmod/
++ LMOD_ROOT=/opt/lmod/
++ source /opt/lmod//lmod/lmod/init/bash
+++ '[' -z '' ']'
+++ case "$-" in
+++ __lmod_vx=x
+++ '[' -n x ']'
+++ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-12.2.0/lmod-8.7.37-qorv6nkkjzyzntx6wbjupmoxrot26t6r/lmod/lmod/init/bash)
Shell debugging restarted
+++ unset __lmod_vx
+++ find /usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core -print -quit
++ export MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
++ MODULEPATH=/usr/local/spack/share/spack/lmod/linux-pop22-x86_64/Core
+ module load gcc netcdf-fortran
+ '[' -z '' ']'
+ case "$-" in
+ __lmod_sh_dbg=x
+ '[' -n x ']'
+ set +x
Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output
Lmod Warning:
-------------------------------------------------------------------------------
The following dependent module(s) are not currently loaded:
gcc-runtime/13.1.0-wiuv7wc (required by: mpich/4.2.1, hdf5/1.14.3-cb5lzz7,
netcdf-c/4.9.2, netcdf-fortran/4.5.3), glibc/2.35-tdr5czg (required by:
mpich/4.2.1, hdf5/1.14.3-cb5lzz7, netcdf-c/4.9.2, netcdf-fortran/4.5.3)
-------------------------------------------------------------------------------
Shell debugging restarted
+ unset __lmod_sh_dbg
+ return 0
+ ./compile.py -run_tests
-- Compiling with double precision
-- netcdf-fortran found via pkg-config
-- Include dirs: /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/include;/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-c-4.9.2-xml2oscem46fvlpwmjl32gwen2vtlpuu/include
-- Libraries: netcdff
-- Derived NetCDFFortran_ROOT = /usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe
-- Configuring done
-- Generating done
-- Build files have been written to: /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble
Using inferred toolchain file: /home/jenkins/workspace/clubb_cmake_test/cmake/toolchains/linux_x86_64_gcc.cmake
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble
Setting CLUBB installation dir: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble
about to cmnake /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble
Running CMake configure...
Scanning dependencies of target clubb_lapack_shared
Scanning dependencies of target scm_activation_lib
[ 0%] Built target clubb_lapack_shared
Scanning dependencies of target clubb_lapack_single
[ 0%] Built target scm_activation_lib
Scanning dependencies of target clubb_lapack_double
[ 18%] Built target clubb_lapack_single
[ 37%] Built target clubb_lapack_double
[ 37%] Built target lapack_lib
Scanning dependencies of target clubb_core_lib
[ 37%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_netcdf.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/stats_netcdf.F90:2561:73:
2561 | character(len=REG_LINE_LEN) , dimension(NML_REG_MAX_ENTRIES) :: entry
| 1
Warning: Array 'entry' at (1) is larger than limit set by '-fmax-stack-var-size=', moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the '-fmax-stack-var-size=' limit (or use '-frecursive', which implies unlimited '-fmax-stack-var-size') - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
[ 37%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/stats_clubb_utilities.F90.o
[ 37%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/numerical_check.F90.o
[ 37%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/precipitation_fraction.F90.o
[ 37%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/fill_holes.F90.o
[ 37%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp3_module.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mono_flux_limiter.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clip_explicit.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_windm_edsclrm_module.F90.o
[ 38%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/setup_clubb_pdf_params.F90.o
[ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xm_wpxp_module.F90.o
[ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_wp2_wp3_module.F90.o
[ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_xp2_xpyp_module.F90.o
[ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/mixing_length.F90.o
[ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/pdf_closure_module.F90.o
[ 39%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/sfc_varnce_module.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/mixing_length.F90:637:16:
637 | if ( abs( dCAPE_dz_j - dCAPE_dz_j_minus_1 ) * 2 <= &
| ^
Warning: 'dcape_dz_j' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/mixing_length.F90:271:42:
271 | real( kind = core_rknd ) :: dCAPE_dz_j, dCAPE_dz_j_minus_1, dCAPE_dz_j_plus_1
| ^
note: 'dcape_dz_j' was declared here
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/advance_wp2_wp3_module.F90:1869:12:
1869 | if ( abs(wp2_avg_before - wp2_avg_after) > epsilon(wp2_avg_after)*1000 ) then
| ^
Warning: 'wp2_avg_before' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_cmake_test/src/CLUBB_core/advance_wp2_wp3_module.F90:1419:20:
1419 | wp2_avg_before, &
| ^
note: 'wp2_avg_before' was declared here
[ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/advance_clubb_core_module.F90.o
[ 40%] Building Fortran object src/CLUBB_core/CMakeFiles/clubb_core_lib.dir/clubb_api_module.F90.o
[ 40%] Linking Fortran static library libclubb_core_lib.a
[ 52%] Built target clubb_core_lib
Scanning dependencies of target microphys_utils_lib
Scanning dependencies of target text_writer_lib
Scanning dependencies of target coamps_lib
[ 52%] Building Fortran object src/Microphys/Microphys_utils/CMakeFiles/microphys_utils_lib.dir/microphys_stats_vars_module.F90.o
Scanning dependencies of target bugsrad_lib
[ 53%] Built target text_writer_lib
[ 64%] Built target coamps_lib
[ 69%] Built target bugsrad_lib
[ 69%] Linking Fortran static library libmicrophys_utils_lib.a
[ 69%] Built target microphys_utils_lib
Scanning dependencies of target KK_microphys_lib
Scanning dependencies of target morrison_microphys_lib
[ 69%] Building Fortran object src/Microphys/Morrison_microphys/CMakeFiles/morrison_microphys_lib.dir/module_mp_graupel.F90.o
[ 69%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_covariances.F90.o
[ 70%] Building Fortran object src/Microphys/KK_microphys/CMakeFiles/KK_microphys_lib.dir/KK_upscaled_turbulent_sed.F90.o
[ 70%] Linking Fortran static library libKK_microphys_lib.a
[ 73%] Built target KK_microphys_lib
Scanning dependencies of target silhs_lib
[ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/latin_hypercube_driver_module.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/SILHS/latin_hypercube_driver_module.F90:1596:10:
1596 | if ( X_u_chi(sample) < (one - cloud_frac_i) ) then
| ^
Warning: 'cloud_frac_i' may be used uninitialized [-Wmaybe-uninitialized]
/home/jenkins/workspace/clubb_cmake_test/src/SILHS/latin_hypercube_driver_module.F90:1578:18:
1578 | cloud_frac_i
| ^
note: 'cloud_frac_i' was declared here
[ 73%] Building Fortran object src/SILHS/CMakeFiles/silhs_lib.dir/silhs_api_module.F90.o
[ 73%] Linking Fortran static library libsilhs_lib.a
[ 76%] Built target silhs_lib
Scanning dependencies of target radiation_lib
Scanning dependencies of target numerical_recipes_lib
[ 77%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/soil_vegetation.F90.o
[ 79%] Built target numerical_recipes_lib
[ 79%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/simple_rad_module.F90.o
[ 80%] Building Fortran object src/Radiation/CMakeFiles/radiation_lib.dir/radiation_module.F90.o
[ 80%] Linking Fortran static library libradiation_lib.a
[ 81%] Built target radiation_lib
Scanning dependencies of target input_fields_lib
[ 84%] Built target input_fields_lib
Scanning dependencies of target benchmark_cases_lib
Scanning dependencies of target G_unit_test_lib
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/spurious_source_test.F90.o
[ 84%] Building Fortran object src/G_unit_test_types/CMakeFiles/G_unit_test_lib.dir/rev_direction_grid_test.F90.o
[ 84%] Building Fortran object src/Benchmark_cases/CMakeFiles/benchmark_cases_lib.dir/prescribe_forcings.F90.o
[ 84%] Linking Fortran static library libbenchmark_cases_lib.a
[ 91%] Built target benchmark_cases_lib
[ 91%] Linking Fortran static library libmorrison_microphys_lib.a
[ 91%] Built target morrison_microphys_lib
Scanning dependencies of target microphys_lib
[ 91%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/cloud_sed_module.F90.o
[ 91%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/silhs_category_variance_module.F90.o
[ 92%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/ice_dfsn_module.F90.o
[ 92%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/mixed_moment_PDF_integrals.F90.o
[ 92%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/advance_microphys_module.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/Microphys/cloud_sed_module.F90:166:49:
166 | if ( zt2zm_api( gr, rcm, k ) > zero .AND. zt2zm_api( gr, Ncm, k ) > zero ) then
| 1
Warning: Impure function 'redirect_interpolated_azm_k' at (1) might not be evaluated [-Wfunction-elimination]
[ 92%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/coamps_microphys_driver_module.F90.o
/home/jenkins/workspace/clubb_cmake_test/src/Microphys/ice_dfsn_module.F90:272:25:
207 | do k = gr%nzt, 1, -1
| 2
......
272 | mass_ice_cryst(k-1) = mass_ice_cryst(k) &
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
/home/jenkins/workspace/clubb_cmake_test/src/Microphys/ice_dfsn_module.F90:287:25:
207 | do k = gr%nzt, 1, -1
| 2
......
287 | mass_ice_cryst(k-1) = mass_ice_cryst(k)
| 1
Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [-Wdo-subscript]
[ 93%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_init_cleanup.F90.o
[ 93%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/pdf_hydromet_microphys_wrapper.F90.o
[ 93%] Linking Fortran static library libG_unit_test_lib.a
[ 93%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/KK_microphys_module.F90.o
[ 96%] Built target G_unit_test_lib
Scanning dependencies of target G_unit_tests
[ 96%] Linking Fortran executable G_unit_tests
[ 96%] Built target G_unit_tests
[ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/estimate_scm_microphys_module.F90.o
[ 96%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/lh_microphys_driver_module.F90.o
[ 97%] Building Fortran object src/Microphys/CMakeFiles/microphys_lib.dir/microphys_driver.F90.o
[ 98%] Linking Fortran static library libmicrophys_lib.a
[ 98%] Built target microphys_lib
Scanning dependencies of target clubb_driver_lib
[ 99%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/generalized_grid_test.F90.o
[ 99%] Building Fortran object src/CMakeFiles/clubb_driver_lib.dir/clubb_driver.F90.o
[ 99%] Linking Fortran static library libclubb_driver_lib.a
[ 99%] Built target clubb_driver_lib
Scanning dependencies of target clubb_driver_test
Scanning dependencies of target clubb_thread_test
Scanning dependencies of target clubb_standalone
Scanning dependencies of target clubb_tuner
[ 99%] Linking Fortran executable clubb_driver_test
[ 99%] Linking Fortran executable clubb_thread_test
[ 99%] Linking Fortran executable clubb_standalone
[ 99%] Linking Fortran executable clubb_tuner
[100%] Built target clubb_thread_test
[100%] Built target clubb_driver_test
[100%] Built target clubb_standalone
[100%] Built target clubb_tuner
Install the project...
-- Install configuration: "Release"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/libclubb_driver_lib.a
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_tuner
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_tuner" to "/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/G_unit_tests
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/G_unit_tests" to "/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_thread_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_thread_test" to "/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_standalone
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_standalone" to "/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
-- Installing: /home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_driver_test
-- Set runtime path of "/home/jenkins/workspace/clubb_cmake_test/install/gcc_PRECdouble/clubb_driver_test" to "/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe:/usr/local/spack/opt/spack/linux-pop22-skylake_avx512/gcc-13.1.0/netcdf-fortran-4.5.3-zcsi7k5jxdw7dz5ufpdkyk6ovim7ebwe/lib"
CLUBBStandardsCheck.py: beginning check on src
PASS: 0 checks failed for src
CLUBBStandardsCheck.py: beginning check on src/CLUBB_core
PASS: 0 checks failed for src/CLUBB_core
CLUBBStandardsCheck.py: beginning check on src/SILHS
PASS: 0 checks failed for src/SILHS
CLUBBStandardsCheck.py: beginning check on src/Benchmark_cases
PASS: 0 checks failed for src/Benchmark_cases
CLUBBStandardsCheck.py: beginning check on src/Radiation
PASS: 0 checks failed for src/Radiation
CLUBBStandardsCheck.py: beginning check on src/Microphys
PASS: 0 checks failed for src/Microphys
CLUBBStandardsCheck.py: beginning check on src/Microphys/KK_microphys
PASS: 0 checks failed for src/Microphys/KK_microphys
CLUBBStandardsCheck.py: beginning check on src/G_unit_test_types
PASS: 0 checks failed for src/G_unit_test_types
[92mBuild completed successfully, and all source code checks passed.[0m
Running CMake ctests
Test project /home/jenkins/workspace/clubb_cmake_test/build/gcc_PRECdouble
Start 1: _init_output_dir
1/11 Test #1: _init_output_dir ................. Passed 0.04 sec
Start 2: bomex_100iter
2/11 Test #2: bomex_100iter .................... Passed 0.52 sec
Start 3: wangara_100iter
3/11 Test #3: wangara_100iter .................. Passed 0.45 sec
Start 4: fire_100iter
4/11 Test #4: fire_100iter ..................... Passed 0.48 sec
Start 5: atex_100iter
5/11 Test #5: atex_100iter ..................... Passed 0.71 sec
Start 6: rico_silhs_100iter
6/11 Test #6: rico_silhs_100iter ............... Passed 0.55 sec
Start 7: arm_97_50iter
7/11 Test #7: arm_97_50iter .................... Passed 0.67 sec
Start 8: cobra_100iter
8/11 Test #8: cobra_100iter .................... Passed 0.55 sec
Start 9: arm_r8029_100iter
9/11 Test #9: arm_r8029_100iter ................ Passed 0.61 sec
Start 10: arm_100iter_8col
10/11 Test #10: arm_100iter_8col ................. Passed 0.85 sec
Start 11: arm_1000iter_5dt
11/11 Test #11: arm_1000iter_5dt ................. Passed 1.03 sec
100% tests passed, 0 tests failed out of 11
Total Test time (real) = 6.45 sec
[92mAll tests passed.[0m
